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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8029M14.5
        

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:98864446-98864214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr1:33389429-33389673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
144, 106
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr1:18013204-18012961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 51
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr1:72186579-72186336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
144, 21
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:44101076-44100856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:61737825-61737605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chr1:29033414-29033660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 216
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr1:22842945-22843186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
143, 91
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr1:15026655-15026900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr1:42736751-42736998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr1:69403279-69403526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr1:69922139-69921892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr1:99913716-99913963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr1:82912847-82912604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
142, 22
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr1:85780479-85780234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr1:85882303-85882538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
5-134
               

               
Cow position:
               
chr1:57568254-57568384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr1:30518994-30519227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
165, 41
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr1:49973888-49973649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr1:55321842-55321605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 136
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr1:73070754-73070513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr1:88131073-88131314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr1:93854823-93855062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:3385718-3385476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:8825352-8825595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:21999655-21999411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:23052093-23052333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
141, 82
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:25179728-25179487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:30534722-30534478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:33551226-33551470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:40512744-40512499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 128
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:58883765-58883522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:79456670-79456427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:82923877-82923634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:86698915-86698672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr1:91892821-91892576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr1:62244345-62244099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr1:102549540-102549772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr1:12061910-12061675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr1:31642733-31642489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr1:57366829-57366582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr1:76752350-76752106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
7-164
               

               
Cow position:
               
chr1:45019572-45019418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
136, 20
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr1:5355426-5355666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
138, 21
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr1:40684391-40684157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
139, 19
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr1:52358974-52358732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
8-151
               

               
Cow position:
               
chr1:77656390-77656533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
137, 100
               

               
Conread position:
               
8-247
               

               
Cow position:
               
chr1:76545232-76544999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
137, 48
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr1:65386634-65386872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
139, 36
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr1:88269905-88269676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
166, 191
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr1:31421268-31421035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
135, 116
               

               
Conread position:
               
11-244
               

               
Cow position:
               
chr1:30283239-30283008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:8554632-8554867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
135, 16
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:9382244-9382012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:11291802-11291567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
132, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:13450510-13450744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
134, 28
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:17036253-17036019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:18880089-18879854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:21087717-21087953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:31396994-31397230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:40053659-40053894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:56490154-56490391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:56723458-56723695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:57424535-57424300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:67834837-67834601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:69766766-69767002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:82652957-82653205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr1:91899300-91899536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:20829193-20829430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:28711220-28711457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:29362600-29362837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
134, 30
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:53198853-53199090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:60339609-60339843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:71562270-71562032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
135, 8
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:82564807-82565044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:85791990-85792223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr1:89425877-89426114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
13-224
               

               
Cow position:
               
chr1:32662042-32662256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 146
               

               
Conread position:
               
13-248
               

               
Cow position:
               
chr1:31811391-31811617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
13-248
               

               
Cow position:
               
chr1:33851578-33851825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
13-248
               

               
Cow position:
               
chr1:63605469-63605233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
14-270
               

               
Cow position:
               
chr1:63502162-63502419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
128, 239
               

               
Conread position:
               
15-238
               

               
Cow position:
               
chr1:99675424-99675202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
26, 141
               

               
Conread position:
               
15-248
               

               
Cow position:
               
chr1:72981580-72981813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
18-181
               

               
Cow position:
               
chr1:79636618-79636460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr1:28873390-28873620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr1:58336151-58336381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr1:72081095-72081323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
128, 9
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr1:94659998-94660218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr1:97226395-97226165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr1:102434723-102434493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
127, 34
               

               
Conread position:
               
21-244
               

               
Cow position:
               
chr1:29609352-29609128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
21-248
               

               
Cow position:
               
chr1:22905100-22905319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
25-248
               

               
Cow position:
               
chr1:31418194-31417971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
211, 12
               

               
Conread position:
               
32-246
               

               
Cow position:
               
chr1:29034624-29034834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
114, 43
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr1:17012416-17012199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr1:18027440-18027217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr1:86547812-86547599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
32-249
               

               
Cow position:
               
chr1:39544092-39544311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
114, 141
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr1:24651609-24651822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
37-248
               

               
Cow position:
               
chr1:31403167-31402948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
46-248
               

               
Cow position:
               
chr1:82366522-82366724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
47-233
               

               
Cow position:
               
chr1:33712410-33712596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
98, 120
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr1:31365745-31365547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 152
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr1:80358843-80358641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
59-240
               

               
Cow position:
               
chr1:43571052-43570872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
59-248
               

               
Cow position:
               
chr1:34692581-34692765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
59-248
               

               
Cow position:
               
chr1:56143981-56143792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 99
               

               
Conread position:
               
59-248
               

               
Cow position:
               
chr1:68607191-68606998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
59-255
               

               
Cow position:
               
chr1:17941432-17941239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
86, 112
               

               
Conread position:
               
60-197
               

               
Cow position:
               
chr1:66999377-66999517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
60-221
               

               
Cow position:
               
chr1:61309362-61309524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
60-248
               

               
Cow position:
               
chr1:40574564-40574753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
61-248
               

               
Cow position:
               
chr1:95239721-95239909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
68-248
               

               
Cow position:
               
chr1:5502330-5502511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
70-239
               

               
Cow position:
               
chr1:28278333-28278502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 142
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr1:56163916-56164089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
75-249
               

               
Cow position:
               
chr1:59209785-59209610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
76-248
               

               
Cow position:
               
chr1:26518514-26518343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 118
               

               
Conread position:
               
80-248
               

               
Cow position:
               
chr1:91751092-91750923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
86-243
               

               
Cow position:
               
chr1:18242956-18242799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 128
               

               
Conread position:
               
87-248
               

               
Cow position:
               
chr1:68429719-68429880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 71
               

               
Conread position:
               
88-249
               

               
Cow position:
               
chr1:25550344-25550506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
92-242
               

               
Cow position:
               
chr1:11860852-11860702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
51, 139
               

               
Conread position:
               
547-721
               

               
Cow position:
               
chr1:92369783-92369955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
170, 41
               

               
Conread position:
               
548-713
               

               
Cow position:
               
chr1:53671704-53671535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
548-726
               

               
Cow position:
               
chr1:816366-816190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
548-727
               

               
Cow position:
               
chr1:85162501-85162318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 37
               

               
Conread position:
               
548-728
               

               
Cow position:
               
chr1:32857084-32857271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
551-728
               

               
Cow position:
               
chr1:92999080-92999260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
551-729
               

               
Cow position:
               
chr1:24777944-24777774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
552-727
               

               
Cow position:
               
chr1:69264858-69265035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
86, 157
               

               
Conread position:
               
553-723
               

               
Cow position:
               
chr1:42537270-42537097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
554-726
               

               
Cow position:
               
chr1:48214106-48213937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
38, 31
               

               
Conread position:
               
554-728
               

               
Cow position:
               
chr1:96136519-96136691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr10:32557672-32557923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 30
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr10:57989672-57989424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
2-232
               

               
Cow position:
               
chr10:14861581-14861810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
143, 201
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr10:11821086-11821335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 15
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr10:21900456-21900216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
168, 24
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr10:22101564-22101799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
143, 23
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr10:39040976-39040735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 47
               

               
Conread position:
               
5-130
               

               
Cow position:
               
chr10:42110661-42110785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chr10:42749096-42749270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
140, 35
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr10:38848039-38848270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
140, 22
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr10:21487241-21487485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr10:29846326-29846080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr10:32064910-32065159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
137, 163
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr10:38345036-38344791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr10:62408525-62408281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
6-245
               

               
Cow position:
               
chr10:17432931-17432692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr10:24977440-24977197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 167
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr10:38538178-38537934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr10:38545573-38545346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
165, 38
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr10:41388785-41388543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
7-239
               

               
Cow position:
               
chr10:26596938-26597171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
74, 202
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr10:10582133-10582367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr10:28931062-28930822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
138, 24
               

               
Conread position:
               
8-166
               

               
Cow position:
               
chr10:6260084-6259928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 96
               

               
Conread position:
               
8-244
               

               
Cow position:
               
chr10:41774903-41774672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
8-246
               

               
Cow position:
               
chr10:21077225-21077459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 106
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr10:64302432-64302199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr10:3542894-3542661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
136, 28
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr10:8326966-8326730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
128, 38
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr10:25564933-25564698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr10:7281767-7281525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr10:5849299-5849063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr10:11698571-11698806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr10:14804163-14804396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr10:39180110-39180348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr10:41157774-41158010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr10:41567429-41567665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr10:56065000-56065236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr10:19495959-19495722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr10:21740425-21740189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr10:32578615-32578851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr10:55093592-55093830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-250
               

               
Cow position:
               
chr10:21400344-21400106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr10:19511942-19512173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr10:30685177-30684948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
132, 15
               

               
Conread position:
               
15-248
               

               
Cow position:
               
chr10:51952295-51952059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
18-153
               

               
Cow position:
               
chr10:25359739-25359874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr10:8290318-8290546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
20-248
               

               
Cow position:
               
chr10:28641875-28642102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
125, 8
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr10:2120659-2120444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
49-248
               

               
Cow position:
               
chr10:64287991-64287791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
59-248
               

               
Cow position:
               
chr10:16925910-16926100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
59-248
               

               
Cow position:
               
chr10:44294538-44294350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
60-248
               

               
Cow position:
               
chr10:19715187-19715002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 21
               

               
Conread position:
               
74-248
               

               
Cow position:
               
chr10:37770760-37770935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
72, 136
               

               
Conread position:
               
75-249
               

               
Cow position:
               
chr10:4191849-4191674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
75-249
               

               
Cow position:
               
chr10:39816097-39815923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
89, 96
               

               
Conread position:
               
75-249
               

               
Cow position:
               
chr10:47907319-47907494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
82-244
               

               
Cow position:
               
chr10:39779636-39779798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 74
               

               
Conread position:
               
83-248
               

               
Cow position:
               
chr10:14335444-14335278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
86-248
               

               
Cow position:
               
chr10:1377647-1377810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
126-248
               

               
Cow position:
               
chr10:29102137-29102014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
422-546
               

               
Cow position:
               
chr10:61148683-61148812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
548-712
               

               
Cow position:
               
chr10:57142199-57142041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
548-713
               

               
Cow position:
               
chr10:41596381-41596550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
548-730
               

               
Cow position:
               
chr10:29252181-29252367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
548-730
               

               
Cow position:
               
chr10:39228164-39228345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
173, 71
               

               
Conread position:
               
552-728
               

               
Cow position:
               
chr10:13315959-13316139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 122
               

               
Conread position:
               
552-728
               

               
Cow position:
               
chr10:50042623-50042797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
553-732
               

               
Cow position:
               
chr10:37442564-37442746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
2-144
               

               
Cow position:
               
chr11:36713159-36713017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 27
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr11:19102525-19102278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr11:30187816-30188064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr11:28063803-28063985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
142, 161
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr11:53432103-53431858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
5-132
               

               
Cow position:
               
chr11:13066722-13066594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr11:8283425-8283629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr11:44251763-44251997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:4270897-4270653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:10090640-10090883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
140, 166
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:10847406-10847650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:11988071-11988315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:23877266-23877511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:28049234-28049002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
134, 50
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:38835467-38835223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:41170728-41170485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:44157289-44157045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr11:85393847-85393604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
6-164
               

               
Cow position:
               
chr11:39802405-39802566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
7-244
               

               
Cow position:
               
chr11:30205898-30206128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr11:12358457-12358216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
138, 44
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr11:26124963-26124721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr11:11677320-11677551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
11-226
               

               
Cow position:
               
chr11:3492976-3493188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 24
               

               
Conread position:
               
11-245
               

               
Cow position:
               
chr11:61401086-61400853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-247
               

               
Cow position:
               
chr11:67450463-67450698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr11:19064284-19064048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr11:28229792-28229556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr11:33194588-33194353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr11:38505640-38505405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr11:57628081-57627846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr11:64045963-64046199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr11:67846606-67846370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr11:73477273-73477509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr11:5343252-5343015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
136, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr11:36744215-36743979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-250
               

               
Cow position:
               
chr11:15983589-15983828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
11-255
               

               
Cow position:
               
chr11:9606613-9606370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
13-243
               

               
Cow position:
               
chr11:15898972-15898746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 43
               

               
Conread position:
               
13-243
               

               
Cow position:
               
chr11:84389598-84389830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
7, 62
               

               
Conread position:
               
14-248
               

               
Cow position:
               
chr11:18073055-18072812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
123, 205
               

               
Conread position:
               
14-248
               

               
Cow position:
               
chr11:24393291-24393528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
18-228
               

               
Cow position:
               
chr11:46246589-46246379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr11:4027585-4027359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr11:9157176-9156952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
128, 9
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr11:58134365-58134595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
19-248
               

               
Cow position:
               
chr11:20510101-20510329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
22-168
               

               
Cow position:
               
chr11:10051297-10051444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
31-248
               

               
Cow position:
               
chr11:31874785-31874568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
32-246
               

               
Cow position:
               
chr11:52419372-52419596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
46-249
               

               
Cow position:
               
chr11:32271316-32271111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 113
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr11:4041089-4040888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 82
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr11:17107687-17107486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
98, 165
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr11:28108149-28108351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
98, 124
               

               
Conread position:
               
47-249
               

               
Cow position:
               
chr11:9734664-9734459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
48-245
               

               
Cow position:
               
chr11:8245315-8245513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
96, 89
               

               
Conread position:
               
48-248
               

               
Cow position:
               
chr11:43514629-43514429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
97, 189
               

               
Conread position:
               
60-248
               

               
Cow position:
               
chr11:1496067-1495884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 98
               

               
Conread position:
               
60-248
               

               
Cow position:
               
chr11:31926190-31926375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
69-249
               

               
Cow position:
               
chr11:43733754-43733935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr11:20734215-20734041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr11:45111650-45111824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr11:64082056-64081882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
71, 97
               

               
Conread position:
               
81-245
               

               
Cow position:
               
chr11:40775961-40775798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 89
               

               
Conread position:
               
87-248
               

               
Cow position:
               
chr11:63655298-63655136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
88-248
               

               
Cow position:
               
chr11:47760650-47760489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 85
               

               
Conread position:
               
94-239
               

               
Cow position:
               
chr11:36762809-36762955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
125-248
               

               
Cow position:
               
chr11:10217243-10217120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
534-728
               

               
Cow position:
               
chr11:63640867-63640669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
546-712
               

               
Cow position:
               
chr11:72292573-72292732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
548-724
               

               
Cow position:
               
chr11:31326029-31326203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
548-728
               

               
Cow position:
               
chr11:69421690-69421518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
548-729
               

               
Cow position:
               
chr11:3283046-3283229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
548-729
               

               
Cow position:
               
chr11:11483334-11483509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
42, 37
               

               
Conread position:
               
549-730
               

               
Cow position:
               
chr11:61454493-61454315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
115, 79
               

               
Conread position:
               
551-712
               

               
Cow position:
               
chr11:19606603-19606765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
54, 61
               

               
Conread position:
               
554-713
               

               
Cow position:
               
chr11:29699671-29699515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr12:25100811-25100567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
142, 48
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr12:6406400-6406156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr12:11098493-11098735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr12:42859576-42859333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr12:3631615-3631374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr12:2282807-2283046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr12:28765767-28765528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr12:4157629-4157865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr12:21254408-21254176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr12:32653796-32654031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr12:33986414-33986650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr12:37558808-37559038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr12:43031133-43030898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
13-249
               

               
Cow position:
               
chr12:21426948-21427181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
132, 15
               

               
Conread position:
               
14-248
               

               
Cow position:
               
chr12:1402751-1402985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr12:22205483-22205253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
20-248
               

               
Cow position:
               
chr12:14662369-14662137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
13, 155
               

               
Conread position:
               
37-245
               

               
Cow position:
               
chr12:27855676-27855474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr12:8197502-8197704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 124
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr12:16821761-16821963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
99, 125
               

               
Conread position:
               
59-244
               

               
Cow position:
               
chr12:21500765-21500944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 110
               

               
Conread position:
               
70-242
               

               
Cow position:
               
chr12:17979067-17979235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
541-732
               

               
Cow position:
               
chr12:44622343-44622530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
174, 77
               

               
Conread position:
               
547-730
               

               
Cow position:
               
chr12:23764485-23764668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
173, 72
               

               
Conread position:
               
548-711
               

               
Cow position:
               
chr12:46120830-46120668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
548-719
               

               
Cow position:
               
chr12:24186489-24186321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
548-724
               

               
Cow position:
               
chr12:4014431-4014261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
548-730
               

               
Cow position:
               
chr12:33319666-33319472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
548-730
               

               
Cow position:
               
chr12:34148359-34148172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
552-727
               

               
Cow position:
               
chr12:25456415-25456587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
163, 67
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr13:35757271-35757512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
144, 25
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr13:26844121-26844359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr13:4941118-4941355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr13:9044530-9044774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr13:30238276-30238518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr13:34042339-34042095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr13:34937521-34937759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
141, 24
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr13:15924354-15924109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr13:20542009-20541761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
6-246
               

               
Cow position:
               
chr13:34048658-34048894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr13:3654292-3654047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 38
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr13:27922198-27921961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr13:31556685-31556450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr13:60700817-60700590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 153
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr13:23003275-23003038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
138, 20
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr13:21131969-21132210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr13:22766057-22766298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
138, 20
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr13:34868776-34869014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
11-245
               

               
Cow position:
               
chr13:60466368-60466600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 16
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr13:2388787-2388551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr13:3058079-3057843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr13:13324780-13325016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr13:30244647-30244411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr13:31734054-31733818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
131, 15
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr13:17308506-17308738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr13:21840163-21839930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
135, 20
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr13:49973715-49973952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
13-246
               

               
Cow position:
               
chr13:2296783-2296552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
12, 98
               

               
Conread position:
               
13-255
               

               
Cow position:
               
chr13:22831654-22831410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
14-244
               

               
Cow position:
               
chr13:29202321-29202086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 33
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr13:43983041-43982813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
14-248
               

               
Cow position:
               
chr13:33336379-33336154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
14-256
               

               
Cow position:
               
chr13:22185197-22184957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 64
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr13:1593113-1592883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr13:4483838-4484069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr13:30303320-30303549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr13:32737778-32737554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
20-248
               

               
Cow position:
               
chr13:6668077-6667846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 146
               

               
Conread position:
               
23-184
               

               
Cow position:
               
chr13:30262403-30262566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
37-246
               

               
Cow position:
               
chr13:11064106-11063908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
133, 96
               

               
Conread position:
               
37-248
               

               
Cow position:
               
chr13:32985290-32985079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
39-248
               

               
Cow position:
               
chr13:50109518-50109727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
47-249
               

               
Cow position:
               
chr13:47229936-47229733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
59-161
               

               
Cow position:
               
chr13:34766789-34766686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
61-244
               

               
Cow position:
               
chr13:34325478-34325292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
61-248
               

               
Cow position:
               
chr13:34029167-34029353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
72-248
               

               
Cow position:
               
chr13:35030642-35030811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr13:30656880-30656708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 54
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr13:41315952-41316126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
71, 97
               

               
Conread position:
               
76-248
               

               
Cow position:
               
chr13:31612208-31612034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
80-249
               

               
Cow position:
               
chr13:58118809-58118640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
83-248
               

               
Cow position:
               
chr13:32545484-32545650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
85-248
               

               
Cow position:
               
chr13:15451001-15450841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
86-246
               

               
Cow position:
               
chr13:57023812-57023974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
86-248
               

               
Cow position:
               
chr13:34911053-34910892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
89-249
               

               
Cow position:
               
chr13:676970-677131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
416-555
               

               
Cow position:
               
chr13:15199589-15199447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 43
               

               
Conread position:
               
545-730
               

               
Cow position:
               
chr13:17619560-17619374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
548-713
               

               
Cow position:
               
chr13:37803836-37803677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
548-723
               

               
Cow position:
               
chr13:18696785-18696611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
548-724
               

               
Cow position:
               
chr13:45023264-45023436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
548-728
               

               
Cow position:
               
chr13:37621412-37621592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
548-728
               

               
Cow position:
               
chr13:47644009-47643832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
548-730
               

               
Cow position:
               
chr13:43525290-43525467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 37
               

               
Conread position:
               
548-730
               

               
Cow position:
               
chr13:55316246-55316443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
552-727
               

               
Cow position:
               
chr13:9265886-9266064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
560-729
               

               
Cow position:
               
chr13:52199060-52198887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
64, 139
               

               
Conread position:
               
625-732
               

               
Cow position:
               
chr13:372526-372633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chr14:46513444-46513684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
144, 23
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr14:33487849-33488100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
142, 22
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr14:44287345-44287101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr14:28993948-28993736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr14:12743162-12742925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr14:46529133-46529372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:7472274-7472509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:9515917-9515656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 242
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:11154260-11154016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:13778861-13779102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:17001153-17000913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:17685302-17685546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:33342041-33342282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
140, 38
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:37223807-37224049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:37413536-37413293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
78, 127
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:41408789-41409034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 153
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:45161003-45161247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr14:48254399-48254153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr14:47923019-47923258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
140, 82
               

               
Conread position:
               
6-236
               

               
Cow position:
               
chr14:16919782-16919554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
139, 45
               

               
Conread position:
               
6-239
               

               
Cow position:
               
chr14:44581272-44581503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 133
               

               
Conread position:
               
6-244
               

               
Cow position:
               
chr14:44377718-44377946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
165, 23
               

               
Conread position:
               
6-244
               

               
Cow position:
               
chr14:47655063-47655298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
139, 76
               

               
Conread position:
               
6-245
               

               
Cow position:
               
chr14:22031514-22031275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
139, 16
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr14:17760994-17760750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
8, 133
               

               
Conread position:
               
7-214
               

               
Cow position:
               
chr14:13323963-13323757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
138, 95
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr14:16273389-16273153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
22, 132
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr14:45303043-45302808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
8-245
               

               
Cow position:
               
chr14:35386903-35386667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
137, 29
               

               
Conread position:
               
8-245
               

               
Cow position:
               
chr14:37457497-37457261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr14:38815899-38815656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
137, 61
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr14:44776141-44775903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
137, 63
               

               
Conread position:
               
9-247
               

               
Cow position:
               
chr14:21743874-21744112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr14:33236948-33237186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
27, 184
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr14:45712081-45711838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
134, 89
               

               
Conread position:
               
11-194
               

               
Cow position:
               
chr14:23900893-23900711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-242
               

               
Cow position:
               
chr14:48970595-48970822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 20
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr14:2284246-2284481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr14:23257266-23257502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr14:45672138-45671904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
134, 16
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr14:750477-750727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr14:29047996-29047759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-250
               

               
Cow position:
               
chr14:17491549-17491311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
132, 17
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr14:19328352-19328123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
14-248
               

               
Cow position:
               
chr14:5528978-5529211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
14-248
               

               
Cow position:
               
chr14:30706372-30706136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 137
               

               
Conread position:
               
15-245
               

               
Cow position:
               
chr14:40773889-40774129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
15-248
               

               
Cow position:
               
chr14:30596468-30596235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
130, 222
               

               
Conread position:
               
15-248
               

               
Cow position:
               
chr14:50110482-50110717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
18-245
               

               
Cow position:
               
chr14:13621222-13620998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr14:5511742-5511972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
20-248
               

               
Cow position:
               
chr14:13864163-13863938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 113
               

               
Conread position:
               
20-248
               

               
Cow position:
               
chr14:45080964-45081193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
22-248
               

               
Cow position:
               
chr14:44685964-44686193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
22-248
               

               
Cow position:
               
chr14:45834070-45834294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
24-248
               

               
Cow position:
               
chr14:13302947-13303172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr14:9045492-9045710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr14:20782390-20782606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
114, 12
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr14:33393838-33393635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
47-249
               

               
Cow position:
               
chr14:30585011-30584809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
48-242
               

               
Cow position:
               
chr14:46474787-46474981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
53-248
               

               
Cow position:
               
chr14:34860636-34860833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
59-248
               

               
Cow position:
               
chr14:44257020-44256822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 193
               

               
Conread position:
               
60-248
               

               
Cow position:
               
chr14:45029170-45028981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
66-248
               

               
Cow position:
               
chr14:30735299-30735118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 11
               

               
Conread position:
               
72-248
               

               
Cow position:
               
chr14:45206283-45206459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
74, 170
               

               
Conread position:
               
74-244
               

               
Cow position:
               
chr14:43557946-43558115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
74-248
               

               
Cow position:
               
chr14:45917616-45917792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr14:38531763-38531589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
63, 89
               

               
Conread position:
               
81-248
               

               
Cow position:
               
chr14:40738494-40738658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
81-248
               

               
Cow position:
               
chr14:48825275-48825443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
82-248
               

               
Cow position:
               
chr14:50138575-50138741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
64, 47
               

               
Conread position:
               
86-248
               

               
Cow position:
               
chr14:29777517-29777354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
102-248
               

               
Cow position:
               
chr14:34043659-34043516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 104
               

               
Conread position:
               
399-551
               

               
Cow position:
               
chr14:1658958-1659115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
548-724
               

               
Cow position:
               
chr14:33758371-33758189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
548-730
               

               
Cow position:
               
chr14:18301963-18301792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 72
               

               
Conread position:
               
551-725
               

               
Cow position:
               
chr14:10078267-10078095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
170, 68
               

               
Conread position:
               
552-730
               

               
Cow position:
               
chr14:48762387-48762205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr15:40105769-40106011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chr15:9912542-9912780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr15:35753694-35753448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 241
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr15:7549300-7549549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 150
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr15:20356990-20356747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 27
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr15:36642840-36643059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr15:2802265-2802023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr15:42936621-42936854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr15:8099395-8099625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr15:18332921-18332682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr15:6156046-6155801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr15:4922058-4922301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr15:15347212-15346969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr15:19738146-19737902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr15:21665839-21665595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr15:31358793-31359037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr15:32494479-32494236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr15:35735485-35735721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
140, 86
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr15:51216496-51216739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr15:4961553-4961785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 128
               

               
Conread position:
               
6-246
               

               
Cow position:
               
chr15:498662-498905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
6-246
               

               
Cow position:
               
chr15:7966057-7965819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
139, 53
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr15:2076556-2076798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr15:6623002-6623240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
146, 133
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr15:9429851-9430089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
132, 19
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr15:18576622-18576864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr15:21950211-21949968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr15:7787794-7787557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr15:29009744-29009984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
138, 21
               

               
Conread position:
               
7-248
               

               
Cow position:
               
chr15:53338935-53339167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
8-242
               

               
Cow position:
               
chr15:30810896-30811141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr15:24295009-24295245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
137, 18
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:444517-444751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:1519241-1519005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:1834552-1834323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:1882597-1882361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:2647747-2647510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:6472008-6471774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
129, 20
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:7894323-7894087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:28490232-28489998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:36077156-36077392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
11-248
               

               
Cow position:
               
chr15:42320512-42320277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
134, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr15:4196372-4196608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
11-249
               

               
Cow position:
               
chr15:18268078-18267841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
134, 15
               
11-263UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr15:2011990-2012240 (view  custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
131, 36
               
13-248UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:4142908-4142673 (view  custom track)

               
               
               
Alignm length:
237

               
               
               
Alignm identity:
168

               
               
               
Alignm E-value:
6e-36

               
               
               
Alignm gaps (pig, cow):
132, 19
14-244UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:2413657-2413421 (view  custom track)

               
               
               
Alignm length:
239

               
               
               
Alignm identity:
161

               
               
               
Alignm E-value:
4e-22

               
               
               
Alignm gaps (pig, cow):
24, 13

               
               
               Conread position:14-244
               
               
               Cow position:chr15:44069840-44070069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:14-246
               
               
               Cow position:chr15:32507726-32507488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:14-248
               
               
               Cow position:chr15:17292355-17292593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:16-239
               
               
               Cow position:chr15:7260547-7260771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:16-247
               
               
               Cow position:chr15:51714874-51715107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 144

               
               
               Conread position:18-241
               
               
               Cow position:chr15:8750347-8750566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):148, 9

               
               
               Conread position:18-245
               
               
               Cow position:chr15:315938-315713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr15:4385189-4385414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):127, 14

               
               
               Conread position:18-248
               
               
               Cow position:chr15:12421247-12421014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:18-248
               
               
               Cow position:chr15:37392413-37392640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:20-255
               
               
               Cow position:chr15:44828715-44828951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):9, 232

               
               
               Conread position:32-248
               
               
               Cow position:chr15:1772426-1772643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:32-248
               
               
               Cow position:chr15:17080274-17080057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:32-248
               
               
               Cow position:chr15:17218470-17218254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):113, 104

               
               
               Conread position:32-248
               
               
               Cow position:chr15:50147006-50147212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 127

               
               
               Conread position:34-246
               
               
               Cow position:chr15:50124012-50123799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:47-248
               
               
               Cow position:chr15:3009908-3009707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:47-248
               
               
               Cow position:chr15:36970867-36971066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):98, 120

               
               
               Conread position:47-258
               
               
               Cow position:chr15:41366120-41366331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:48-249
               
               
               Cow position:chr15:36626345-36626134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):95, 169

               
               
               Conread position:59-248
               
               
               Cow position:chr15:524900-524710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 105

               
               
               Conread position:59-248
               
               
               Cow position:chr15:4671391-4671583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:59-248
               
               
               Cow position:chr15:7837205-7837395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:59-255
               
               
               Cow position:chr15:4765166-4765362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 135

               
               
               Conread position:60-248
               
               
               Cow position:chr15:7544843-7545028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:61-249
               
               
               Cow position:chr15:3888835-3889022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:66-248
               
               
               Cow position:chr15:35647699-35647516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:67-248
               
               
               Cow position:chr15:32720774-32720590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:69-245
               
               
               Cow position:chr15:53577368-53577193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 76

               
               
               Conread position:75-248
               
               
               Cow position:chr15:5980333-5980509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:76-244
               
               
               Cow position:chr15:7234277-7234444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr15:10888593-10888762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:77-248
               
               
               Cow position:chr15:3261355-3261183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:78-242
               
               
               Cow position:chr15:4812582-4812747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:81-255
               
               
               Cow position:chr15:14582368-14582199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:548-723
               
               
               Cow position:chr15:10335804-10335624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 11

               
               
               Conread position:548-727
               
               
               Cow position:chr15:42789099-42789286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr15:2141254-2141437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:548-730
               
               
               Cow position:chr15:30470923-30471096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):173, 71

               
               
               Conread position:551-712
               
               
               Cow position:chr15:36713966-36714129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:552-727
               
               
               Cow position:chr15:47058791-47058611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:1-245
               
               
               Cow position:chr16:40296622-40296377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:1-248
               
               
               Cow position:chr16:28437837-28437582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):116, 46

               
               
               Conread position:2-248
               
               
               Cow position:chr16:18764066-18763822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 186

               
               
               Conread position:5-244
               
               
               Cow position:chr16:42739533-42739307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:5-245
               
               
               Cow position:chr16:25156318-25156077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 136

               
               
               Conread position:5-245
               
               
               Cow position:chr16:26663309-26663552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-245
               
               
               Cow position:chr16:43897711-43897471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr16:407471-407228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr16:1567894-1567650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr16:2727728-2727484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr16:5483883-5484123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-248
               
               
               Cow position:chr16:8816544-8816302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:5-248
               
               
               Cow position:chr16:9930496-9930739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:5-248
               
               
               Cow position:chr16:10203870-10203635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-248
               
               
               Cow position:chr16:10437801-10438045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr16:12538365-12538122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:5-248
               
               
               Cow position:chr16:15566302-15566544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):141, 46

               
               
               Conread position:5-248
               
               
               Cow position:chr16:25085203-25085431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 21

               
               
               Conread position:5-248
               
               
               Cow position:chr16:25257496-25257739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):132, 159

               
               
               Conread position:5-248
               
               
               Cow position:chr16:25441184-25441430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr16:25457905-25457661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr16:28471542-28471299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr16:29033612-29033845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr16:29046582-29046825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:7-232
               
               
               Cow position:chr16:25341529-25341754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):109, 44

               
               
               Conread position:7-248
               
               
               Cow position:chr16:34529885-34530125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:8-171
               
               
               Cow position:chr16:41756752-41756592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):137, 44

               
               
               Conread position:8-248
               
               
               Cow position:chr16:15184367-15184599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:11-222
               
               
               Cow position:chr16:10376017-10375807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr16:5661411-5661646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr16:31832193-31832429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr16:53045915-53046151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr16:28170802-28170568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):135, 19

               
               
               Conread position:12-248
               
               
               Cow position:chr16:4302769-4302537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:13-248
               
               
               Cow position:chr16:42186089-42185857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 99

               
               
               Conread position:14-248
               
               
               Cow position:chr16:23252937-23252703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 193

               
               
               Conread position:18-245
               
               
               Cow position:chr16:2411395-2411167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:18-248
               
               
               Cow position:chr16:2483568-2483337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:19-248
               
               
               Cow position:chr16:23982885-23983112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):126, 33

               
               
               Conread position:22-232
               
               
               Cow position:chr16:18687551-18687341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:60-248
               
               
               Cow position:chr16:25170967-25171155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:60-248
               
               
               Cow position:chr16:25188244-25188433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-248
               
               
               Cow position:chr16:41163451-41163262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-255
               
               
               Cow position:chr16:2239125-2238932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):85, 109

               
               
               Conread position:66-248
               
               
               Cow position:chr16:24105325-24105507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 65

               
               
               Conread position:68-245
               
               
               Cow position:chr16:14666190-14666012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:68-248
               
               
               Cow position:chr16:836668-836850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:73-248
               
               
               Cow position:chr16:25892346-25892520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 55

               
               
               Conread position:74-248
               
               
               Cow position:chr16:31592285-31592110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr16:32362-32536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:86-248
               
               
               Cow position:chr16:18498677-18498516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:92-248
               
               
               Cow position:chr16:15492875-15493032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 75

               
               
               Conread position:548-711
               
               
               Cow position:chr16:17945562-17945728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:548-712
               
               
               Cow position:chr16:51915611-51915779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:552-728
               
               
               Cow position:chr16:12091618-12091446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:552-730
               
               
               Cow position:chr16:11422345-11422522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):169, 106

               
               
               Conread position:552-730
               
               
               Cow position:chr16:19003488-19003306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:2-248
               
               
               Cow position:chr17:15384413-15384662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:4-248
               
               
               Cow position:chr17:14894290-14894535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:5-245
               
               
               Cow position:chr17:18103547-18103311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:5-248
               
               
               Cow position:chr17:3642698-3642451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:5-248
               
               
               Cow position:chr17:6259982-6260224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr17:11087586-11087345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr17:15850535-15850779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr17:19269228-19268986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:5-248
               
               
               Cow position:chr17:20488139-20488377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):120, 152

               
               
               Conread position:7-248
               
               
               Cow position:chr17:19019710-19019949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 150

               
               
               Conread position:8-238
               
               
               Cow position:chr17:12669936-12669705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):137, 180

               
               
               Conread position:11-194
               
               
               Cow position:chr17:181502-181682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-213
               
               
               Cow position:chr17:24634093-24634294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr17:2262241-2262478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):133, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr17:6119847-6120082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:11-248
               
               
               Cow position:chr17:14216887-14216658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr17:15143228-15142992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr17:15156825-15156591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:11-248
               
               
               Cow position:chr17:15435930-15436166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr17:31767900-31767664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr17:34156267-34156503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr17:43952424-43952188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr17:1382675-1382438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr17:8209245-8209483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr17:20665587-20665349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr17:23324315-23324078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:14-244
               
               
               Cow position:chr17:25737811-25738040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:14-248
               
               
               Cow position:chr17:18300248-18300019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:16-248
               
               
               Cow position:chr17:20087597-20087366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:18-206
               
               
               Cow position:chr17:24029848-24029660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr17:2579767-2579996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr17:6068712-6068936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:18-248
               
               
               Cow position:chr17:40804969-40805199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:32-245
               
               
               Cow position:chr17:250321-250538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:47-246
               
               
               Cow position:chr17:24782340-24782538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):98, 140

               
               
               Conread position:59-248
               
               
               Cow position:chr17:1880281-1880465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 102

               
               
               Conread position:59-248
               
               
               Cow position:chr17:4060288-4060480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 151

               
               
               Conread position:59-249
               
               
               Cow position:chr17:22132421-22132612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:61-248
               
               
               Cow position:chr17:151684-151497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:63-248
               
               
               Cow position:chr17:5226812-5226998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:67-248
               
               
               Cow position:chr17:15324021-15324203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 143

               
               
               Conread position:67-248
               
               
               Cow position:chr17:16857325-16857144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 82

               
               
               Conread position:75-248
               
               
               Cow position:chr17:228107-227933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr17:11376582-11376409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:79-247
               
               
               Cow position:chr17:14051905-14051736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 66

               
               
               Conread position:548-713
               
               
               Cow position:chr17:32138343-32138187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:548-727
               
               
               Cow position:chr17:25490980-25490798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:548-727
               
               
               Cow position:chr17:40331845-40332023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):173, 110

               
               
               Conread position:548-728
               
               
               Cow position:chr17:9713261-9713077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:548-729
               
               
               Cow position:chr17:7810674-7810502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:548-730
               
               
               Cow position:chr17:5686034-5685854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:548-730
               
               
               Cow position:chr17:24554077-24554269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:2-245
               
               
               Cow position:chr18:29765311-29765559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:2-248
               
               
               Cow position:chr18:46868216-46867975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):120, 28

               
               
               Conread position:5-245
               
               
               Cow position:chr18:37505409-37505647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:5-247
               
               
               Cow position:chr18:14416321-14416566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-248
               
               
               Cow position:chr18:14130735-14130980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:5-248
               
               
               Cow position:chr18:23797993-23798235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:5-248
               
               
               Cow position:chr18:36508678-36508923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr18:52651265-52651507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:6-241
               
               
               Cow position:chr18:33750361-33750594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 110

               
               
               Conread position:7-245
               
               
               Cow position:chr18:54003870-54004096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:7-248
               
               
               Cow position:chr18:25351097-25351338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:7-248
               
               
               Cow position:chr18:27987413-27987653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 12

               
               
               Conread position:7-248
               
               
               Cow position:chr18:54171189-54170949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):138, 26

               
               
               Conread position:8-248
               
               
               Cow position:chr18:8169054-8169291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):137, 47

               
               
               Conread position:10-248
               
               
               Cow position:chr18:51481186-51481423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):133, 42

               
               
               Conread position:11-248
               
               
               Cow position:chr18:11274759-11274523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr18:19352729-19352954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:11-248
               
               
               Cow position:chr18:22602834-22603068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr18:24040385-24040142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr18:51342033-51342269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr18:51462732-51462497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:13-248
               
               
               Cow position:chr18:55088575-55088337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:14-197
               
               
               Cow position:chr18:54023769-54023587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 13

               
               
               Conread position:14-248
               
               
               Cow position:chr18:40478738-40478972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:18-245
               
               
               Cow position:chr18:27837957-27837730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr18:28973543-28973300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:18-248
               
               
               Cow position:chr18:32652562-32652790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr18:33336222-33336454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr18:41840465-41840235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:20-249
               
               
               Cow position:chr18:33269184-33269414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 121

               
               
               Conread position:47-249
               
               
               Cow position:chr18:33953194-33952993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):99, 122

               
               
               Conread position:59-248
               
               
               Cow position:chr18:16088545-16088735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):86, 105

               
               
               Conread position:59-248
               
               
               Cow position:chr18:16176219-16176028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 180

               
               
               Conread position:60-242
               
               
               Cow position:chr18:51660741-51660924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:65-248
               
               
               Cow position:chr18:54270913-54271095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):80, 140

               
               
               Conread position:81-242
               
               
               Cow position:chr18:32260095-32259932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:548-727
               
               
               Cow position:chr18:11672050-11672222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:551-725
               
               
               Cow position:chr18:12270511-12270680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):170, 68

               
               
               Conread position:551-730
               
               
               Cow position:chr18:39875249-39875072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):164, 30

               
               
               Conread position:552-728
               
               
               Cow position:chr18:1954578-1954409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):169, 93

               
               
               Conread position:603-723
               
               
               Cow position:chr18:40356900-40356779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:2-244
               
               
               Cow position:chr19:439092-438852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):144, 17

               
               
               Conread position:2-249
               
               
               Cow position:chr19:3138284-3138532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):143, 49

               
               
               Conread position:5-244
               
               
               Cow position:chr19:7488663-7488901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-245
               
               
               Cow position:chr19:27052160-27051925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:5-248
               
               
               Cow position:chr19:172561-172798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr19:5729179-5729423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr19:33873776-33874018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr19:33941960-33942195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:5-248
               
               
               Cow position:chr19:39185196-39184952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr19:39390858-39391098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:5-249
               
               
               Cow position:chr19:75897-75660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):141, 12

               
               
               Conread position:6-248
               
               
               Cow position:chr19:162749-162514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:6-248
               
               
               Cow position:chr19:893257-893014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:6-248
               
               
               Cow position:chr19:28581310-28581067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:6-248
               
               
               Cow position:chr19:39669158-39668919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):139, 124

               
               
               Conread position:8-245
               
               
               Cow position:chr19:32182727-32182498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:9-134
               
               
               Cow position:chr19:48861638-48861516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:9-248
               
               
               Cow position:chr19:35385394-35385160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:10-248
               
               
               Cow position:chr19:204312-204550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-234
               
               
               Cow position:chr19:5208523-5208745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-245
               
               
               Cow position:chr19:43144067-43144297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr19:7342419-7342654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:11-248
               
               
               Cow position:chr19:52151479-52151243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr19:32211722-32211485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:14-248
               
               
               Cow position:chr19:40852078-40851846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:32-248
               
               
               Cow position:chr19:772967-773182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):113, 15

               
               
               Conread position:32-248
               
               
               Cow position:chr19:2274008-2273791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:32-248
               
               
               Cow position:chr19:28593634-28593849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):113, 138

               
               
               Conread position:58-264
               
               
               Cow position:chr19:33444025-33443818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:59-197
               
               
               Cow position:chr19:4386015-4386158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:60-248
               
               
               Cow position:chr19:38293-38483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:76-241
               
               
               Cow position:chr19:20105125-20105291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:77-245
               
               
               Cow position:chr19:136590-136423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 94

               
               
               Conread position:77-248
               
               
               Cow position:chr19:168185-168013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:97-248
               
               
               Cow position:chr19:5901059-5900908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 61

               
               
               Conread position:428-541
               
               
               Cow position:chr19:33717915-33718033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:521-728
               
               
               Cow position:chr19:14596691-14596887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:548-715
               
               
               Cow position:chr19:14348042-14348205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:548-724
               
               
               Cow position:chr19:21199168-21199339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:548-730
               
               
               Cow position:chr19:36059967-36060149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):173, 153

               
               
               Conread position:551-728
               
               
               Cow position:chr19:13766128-13765954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):169, 68

               
               
               Conread position:551-729
               
               
               Cow position:chr19:6344106-6344275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:2-242
               
               
               Cow position:chr2:29029925-29030168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:2-248
               
               
               Cow position:chr2:45968164-45967917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:5-197
               
               
               Cow position:chr2:1362951-1363144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:5-248
               
               
               Cow position:chr2:5963290-5963046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr2:8118328-8118572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-248
               
               
               Cow position:chr2:11159335-11159091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr2:12224522-12224278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr2:28650439-28650198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:5-248
               
               
               Cow position:chr2:28793043-28793288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-248
               
               
               Cow position:chr2:36053199-36052965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):141, 22

               
               
               Conread position:5-248
               
               
               Cow position:chr2:50983437-50983194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr2:53329547-53329790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 22

               
               
               Conread position:5-248
               
               
               Cow position:chr2:65938658-65938416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:6-244
               
               
               Cow position:chr2:36980168-36980407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:6-248
               
               
               Cow position:chr2:13045913-13045670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:6-248
               
               
               Cow position:chr2:42333056-42332833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:6-248
               
               
               Cow position:chr2:52062461-52062701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):139, 45

               
               
               Conread position:6-249
               
               
               Cow position:chr2:35355487-35355733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:6-258
               
               
               Cow position:chr2:45919771-45919521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 23

               
               
               Conread position:7-248
               
               
               Cow position:chr2:16900045-16900285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):138, 12

               
               
               Conread position:7-248
               
               
               Cow position:chr2:50077392-50077633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:8-237
               
               
               Cow position:chr2:44497665-44497436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:8-246
               
               
               Cow position:chr2:63978104-63978340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:8-248
               
               
               Cow position:chr2:5485181-5484939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:8-248
               
               
               Cow position:chr2:10186437-10186200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-248
               
               
               Cow position:chr2:69584833-69584591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:8-249
               
               
               Cow position:chr2:198994-198755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):137, 19

               
               
               Conread position:9-244
               
               
               Cow position:chr2:20873993-20873763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 28

               
               
               Conread position:11-179
               
               
               Cow position:chr2:51990737-51990571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-244
               
               
               Cow position:chr2:49472040-49472272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-247
               
               
               Cow position:chr2:2413003-2412768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr2:212428-212193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:11-248
               
               
               Cow position:chr2:2088380-2088144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:11-248
               
               
               Cow position:chr2:5474309-5474545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr2:39421372-39421606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr2:39622418-39622646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):134, 175

               
               
               Conread position:11-248
               
               
               Cow position:chr2:47038621-47038385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr2:51990455-51990220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr2:57588489-57588725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr2:80955843-80955607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr2:3324771-3324530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr2:9907706-9907943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr2:25030683-25030450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr2:44091094-44091331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr2:57334989-57335226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-250
               
               
               Cow position:chr2:2380900-2381138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:12-248
               
               
               Cow position:chr2:10611832-10611602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):133, 14

               
               
               Conread position:14-239
               
               
               Cow position:chr2:3502430-3502202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:14-248
               
               
               Cow position:chr2:10268858-10268624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:16-248
               
               
               Cow position:chr2:7902823-7903050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):127, 60

               
               
               Conread position:18-248
               
               
               Cow position:chr2:282886-282657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr2:5905061-5904828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:18-248
               
               
               Cow position:chr2:81256611-81256842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:18-249
               
               
               Cow position:chr2:24146665-24146895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:19-248
               
               
               Cow position:chr2:11692363-11692576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:20-239
               
               
               Cow position:chr2:44991491-44991271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:20-248
               
               
               Cow position:chr2:175728-175496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:20-248
               
               
               Cow position:chr2:41172478-41172700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:20-249
               
               
               Cow position:chr2:26921485-26921706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):125, 177

               
               
               Conread position:27-248
               
               
               Cow position:chr2:5870544-5870323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:32-242
               
               
               Cow position:chr2:41686326-41686537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):108, 79

               
               
               Conread position:32-248
               
               
               Cow position:chr2:49590213-49590430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):114, 140

               
               
               Conread position:32-248
               
               
               Cow position:chr2:52616282-52616499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:32-248
               
               
               Cow position:chr2:54737318-54737535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:32-249
               
               
               Cow position:chr2:4403345-4403127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:35-248
               
               
               Cow position:chr2:5813563-5813350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):111, 105

               
               
               Conread position:40-248
               
               
               Cow position:chr2:40538309-40538511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:46-248
               
               
               Cow position:chr2:24463971-24463766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:47-248
               
               
               Cow position:chr2:22077610-22077813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:47-248
               
               
               Cow position:chr2:59413853-59413652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):99, 111

               
               
               Conread position:59-245
               
               
               Cow position:chr2:10732925-10732738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:59-248
               
               
               Cow position:chr2:19011186-19011376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 105

               
               
               Conread position:59-248
               
               
               Cow position:chr2:80293108-80292918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 104

               
               
               Conread position:60-246
               
               
               Cow position:chr2:47603405-47603218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:60-257
               
               
               Cow position:chr2:24922239-24922436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:67-248
               
               
               Cow position:chr2:44935074-44934887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:74-248
               
               
               Cow position:chr2:16290196-16290371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr2:67419445-67419269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr2:14822979-14823148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 48

               
               
               Conread position:78-238
               
               
               Cow position:chr2:73193004-73193160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 65

               
               
               Conread position:81-248
               
               
               Cow position:chr2:903897-904058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:81-248
               
               
               Cow position:chr2:31297660-31297826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:81-248
               
               
               Cow position:chr2:42671125-42670957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:85-248
               
               
               Cow position:chr2:49604805-49604969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 53

               
               
               Conread position:85-248
               
               
               Cow position:chr2:76024653-76024809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:86-244
               
               
               Cow position:chr2:28620158-28619999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:88-248
               
               
               Cow position:chr2:6961333-6961494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 113

               
               
               Conread position:95-248
               
               
               Cow position:chr2:14777942-14777788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:384-539
               
               
               Cow position:chr2:39787627-39787785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:548-728
               
               
               Cow position:chr2:47753567-47753392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:548-728
               
               
               Cow position:chr2:72309970-72309793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:548-730
               
               
               Cow position:chr2:21410260-21410435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:551-712
               
               
               Cow position:chr2:38647119-38646961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 113

               
               
               Conread position:553-726
               
               
               Cow position:chr2:12839996-12839827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:2-248
               
               
               Cow position:chr20:29948802-29949050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:3-245
               
               
               Cow position:chr20:37580386-37580625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:4-248
               
               
               Cow position:chr20:13763211-13763455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):143, 47

               
               
               Conread position:5-245
               
               
               Cow position:chr20:23469359-23469118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-245
               
               
               Cow position:chr20:30684627-30684868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr20:5535244-5535486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr20:12438454-12438213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr20:15292317-15292555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr20:23799192-23799435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr20:25850684-25850441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr20:27869504-27869751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr20:28161077-28161319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:6-248
               
               
               Cow position:chr20:8992914-8992671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:6-248
               
               
               Cow position:chr20:35124802-35125047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:7-239
               
               
               Cow position:chr20:8834893-8834658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:7-247
               
               
               Cow position:chr20:15097566-15097329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):138, 12

               
               
               Conread position:7-248
               
               
               Cow position:chr20:21393904-21394145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):139, 37

               
               
               Conread position:11-248
               
               
               Cow position:chr20:10840395-10840161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:11-248
               
               
               Cow position:chr20:38350986-38351220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr20:823075-823312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr20:25961411-25961648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:18-187
               
               
               Cow position:chr20:10845801-10845630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-245
               
               
               Cow position:chr20:8003905-8003681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:18-248
               
               
               Cow position:chr20:10855025-10854800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:18-248
               
               
               Cow position:chr20:21914648-21914878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr20:28565275-28565043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:19-245
               
               
               Cow position:chr20:13679723-13679495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:23-231
               
               
               Cow position:chr20:18324852-18324642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):6, 186

               
               
               Conread position:40-248
               
               
               Cow position:chr20:20754136-20753935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:47-248
               
               
               Cow position:chr20:16179467-16179266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 188

               
               
               Conread position:59-242
               
               
               Cow position:chr20:2790543-2790361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 105

               
               
               Conread position:59-248
               
               
               Cow position:chr20:3271063-3271249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 137

               
               
               Conread position:59-248
               
               
               Cow position:chr20:42905575-42905754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:60-246
               
               
               Cow position:chr20:19438294-19438471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 137

               
               
               Conread position:66-248
               
               
               Cow position:chr20:7115119-7114936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:68-248
               
               
               Cow position:chr20:8215888-8216067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 151

               
               
               Conread position:80-248
               
               
               Cow position:chr20:22716948-22716782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:86-249
               
               
               Cow position:chr20:22697656-22697818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 70

               
               
               Conread position:552-724
               
               
               Cow position:chr20:33438893-33438714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:625-730
               
               
               Cow position:chr20:5061299-5061404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr21:21517944-21518186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):145, 28

               
               
               Conread position:2-220
               
               
               Cow position:chr21:9892357-9892574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):143, 17

               
               
               Conread position:2-246
               
               
               Cow position:chr21:27282808-27283054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:2-248
               
               
               Cow position:chr21:23812600-23812841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):144, 15

               
               
               Conread position:2-250
               
               
               Cow position:chr21:33251928-33252171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:4-249
               
               
               Cow position:chr21:46916008-46916246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):141, 24

               
               
               Conread position:5-225
               
               
               Cow position:chr21:29506-29725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:5-244
               
               
               Cow position:chr21:40271255-40271015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-245
               
               
               Cow position:chr21:23861748-23861986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 30

               
               
               Conread position:5-248
               
               
               Cow position:chr21:146348-146592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-248
               
               
               Cow position:chr21:2883323-2883077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-248
               
               
               Cow position:chr21:3779192-3779438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr21:10567094-10567338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr21:30562228-30562472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr21:30599500-30599258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr21:31559230-31558990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:5-248
               
               
               Cow position:chr21:35144182-35144426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr21:48116527-48116770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-249
               
               
               Cow position:chr21:217323-217568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:6-245
               
               
               Cow position:chr21:21915113-21915350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):139, 181

               
               
               Conread position:7-144
               
               
               Cow position:chr21:37292998-37293133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:7-247
               
               
               Cow position:chr21:25975699-25975940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 183

               
               
               Conread position:7-248
               
               
               Cow position:chr21:23602977-23603209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):138, 112

               
               
               Conread position:9-248
               
               
               Cow position:chr21:1689797-1689553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:9-248
               
               
               Cow position:chr21:7267112-7266862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:11-239
               
               
               Cow position:chr21:26650468-26650695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-245
               
               
               Cow position:chr21:6339993-6340226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr21:2476114-2475878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr21:11406569-11406333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr21:11506023-11506259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr21:37371672-37371908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):135, 26

               
               
               Conread position:11-248
               
               
               Cow position:chr21:39425490-39425724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr21:4091076-4091312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr21:12055574-12055337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:13-248
               
               
               Cow position:chr21:359801-360029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):132, 88

               
               
               Conread position:13-248
               
               
               Cow position:chr21:21925891-21925652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):132, 202

               
               
               Conread position:14-242
               
               
               Cow position:chr21:4589555-4589328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 13

               
               
               Conread position:14-248
               
               
               Cow position:chr21:2710938-2711166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:14-256
               
               
               Cow position:chr21:20744072-20743837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):131, 40

               
               
               Conread position:18-248
               
               
               Cow position:chr21:10850517-10850746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:19-249
               
               
               Cow position:chr21:28735669-28735899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):117, 144

               
               
               Conread position:22-244
               
               
               Cow position:chr21:13313209-13313431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:27-248
               
               
               Cow position:chr21:2416661-2416877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):143, 86

               
               
               Conread position:32-245
               
               
               Cow position:chr21:11453210-11452998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):113, 139

               
               
               Conread position:32-248
               
               
               Cow position:chr21:467342-467554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):138, 106

               
               
               Conread position:32-248
               
               
               Cow position:chr21:37046066-37046283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:58-248
               
               
               Cow position:chr21:4093978-4094167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:60-248
               
               
               Cow position:chr21:2511369-2511558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:60-248
               
               
               Cow position:chr21:4077310-4077497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:71-239
               
               
               Cow position:chr21:12803564-12803398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:74-248
               
               
               Cow position:chr21:37148526-37148709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:75-248
               
               
               Cow position:chr21:1287729-1287557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:75-248
               
               
               Cow position:chr21:47949555-47949728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:76-248
               
               
               Cow position:chr21:47941349-47941519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 91

               
               
               Conread position:81-248
               
               
               Cow position:chr21:27070766-27070598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:81-249
               
               
               Cow position:chr21:18819668-18819499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:92-245
               
               
               Cow position:chr21:1192264-1192418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:106-246
               
               
               Cow position:chr21:26095335-26095477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:519-727
               
               
               Cow position:chr21:8648337-8648543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:548-726
               
               
               Cow position:chr21:27569069-27568893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):173, 87

               
               
               Conread position:553-730
               
               
               Cow position:chr21:30980469-30980291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):106, 174

               
               
               Conread position:554-726
               
               
               Cow position:chr21:13584951-13584787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-227
               
               
               Cow position:chr22:8148230-8148003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:1-248
               
               
               Cow position:chr22:15313699-15313460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):145, 25

               
               
               Conread position:5-239
               
               
               Cow position:chr22:560452-560217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-239
               
               
               Cow position:chr22:17328486-17328252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:5-248
               
               
               Cow position:chr22:13918079-13918325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr22:19143446-19143195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr22:23853915-23854151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):165, 128

               
               
               Conread position:5-248
               
               
               Cow position:chr22:31313592-31313836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr22:31334785-31334541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr22:34168584-34168827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr22:36861277-36861037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr22:42991425-42991668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:5-248
               
               
               Cow position:chr22:44396695-44396939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr22:46630797-46630553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-255
               
               
               Cow position:chr22:36184008-36184252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:6-243
               
               
               Cow position:chr22:1322376-1322613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):137, 188

               
               
               Conread position:6-244
               
               
               Cow position:chr22:1269540-1269303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):132, 158

               
               
               Conread position:6-248
               
               
               Cow position:chr22:14208161-14207919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:6-249
               
               
               Cow position:chr22:36580547-36580310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:7-248
               
               
               Cow position:chr22:36269476-36269725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:8-245
               
               
               Cow position:chr22:6502881-6502644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 141

               
               
               Conread position:8-245
               
               
               Cow position:chr22:15955919-15955688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:8-245
               
               
               Cow position:chr22:41239336-41239580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:8-248
               
               
               Cow position:chr22:3306150-3305905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 160

               
               
               Conread position:8-248
               
               
               Cow position:chr22:8875859-8876107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 64

               
               
               Conread position:8-248
               
               
               Cow position:chr22:35907138-35906898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):135, 116

               
               
               Conread position:8-248
               
               
               Cow position:chr22:36552198-36551965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:8-249
               
               
               Cow position:chr22:11781902-11781656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):15, 160

               
               
               Conread position:10-180
               
               
               Cow position:chr22:1522265-1522439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:10-248
               
               
               Cow position:chr22:44352727-44352485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 165

               
               
               Conread position:11-245
               
               
               Cow position:chr22:15851574-15851808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:11-248
               
               
               Cow position:chr22:537355-537589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr22:693877-694114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr22:1879047-1879282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr22:16814140-16814376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr22:35672102-35671866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:11-248
               
               
               Cow position:chr22:44369372-44369137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:11-248
               
               
               Cow position:chr22:46581334-46581098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):135, 26

               
               
               Conread position:11-248
               
               
               Cow position:chr22:48004794-48005031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):136, 8

               
               
               Conread position:11-249
               
               
               Cow position:chr22:6020916-6021154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr22:20240588-20240353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr22:24950350-24950587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr22:27284285-27284522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr22:27309519-27309286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:13-197
               
               
               Cow position:chr22:44490138-44490324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:13-249
               
               
               Cow position:chr22:10909577-10909344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:14-248
               
               
               Cow position:chr22:39469260-39469025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:18-248
               
               
               Cow position:chr22:18816119-18815889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr22:37132681-37132916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 145

               
               
               Conread position:20-248
               
               
               Cow position:chr22:525427-525198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:27-248
               
               
               Cow position:chr22:1520740-1520524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):118, 156

               
               
               Conread position:32-239
               
               
               Cow position:chr22:5308380-5308588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:32-248
               
               
               Cow position:chr22:326891-326677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):113, 129

               
               
               Conread position:32-248
               
               
               Cow position:chr22:18027552-18027769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:32-249
               
               
               Cow position:chr22:3278083-3277865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):113, 139

               
               
               Conread position:37-249
               
               
               Cow position:chr22:5233004-5232791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:47-249
               
               
               Cow position:chr22:12731381-12731178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 117

               
               
               Conread position:57-228
               
               
               Cow position:chr22:13736259-13736088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 149

               
               
               Conread position:59-243
               
               
               Cow position:chr22:44934283-44934468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:59-248
               
               
               Cow position:chr22:8739913-8739723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):87, 108

               
               
               Conread position:68-240
               
               
               Cow position:chr22:5932518-5932343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 157

               
               
               Conread position:100-248
               
               
               Cow position:chr22:35942436-35942291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:427-546
               
               
               Cow position:chr22:39707726-39707850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:538-728
               
               
               Cow position:chr22:23120431-23120624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 40

               
               
               Conread position:548-713
               
               
               Cow position:chr22:34104635-34104462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:548-723
               
               
               Cow position:chr22:3250957-3250785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:548-723
               
               
               Cow position:chr22:6176249-6176087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 37

               
               
               Conread position:548-726
               
               
               Cow position:chr22:1983885-1984055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:551-723
               
               
               Cow position:chr22:36569286-36569114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:552-730
               
               
               Cow position:chr22:23695349-23695163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:2-175
               
               
               Cow position:chr23:6217121-6217291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):143, 31

               
               
               Conread position:2-242
               
               
               Cow position:chr23:26836915-26837151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:5-245
               
               
               Cow position:chr23:2026866-2026621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-245
               
               
               Cow position:chr23:9545835-9546068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):140, 42

               
               
               Conread position:5-248
               
               
               Cow position:chr23:2341341-2341586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:5-248
               
               
               Cow position:chr23:4640371-4640133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr23:4888926-4889164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr23:7046405-7046154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:5-248
               
               
               Cow position:chr23:14965499-14965255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr23:19489795-19490038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:5-248
               
               
               Cow position:chr23:27399756-27399996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:5-248
               
               
               Cow position:chr23:36031124-36030881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:6-244
               
               
               Cow position:chr23:4510331-4510568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:6-244
               
               
               Cow position:chr23:25683787-25683547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:6-248
               
               
               Cow position:chr23:3014647-3014890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:6-248
               
               
               Cow position:chr23:15525864-15526109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 119

               
               
               Conread position:6-248
               
               
               Cow position:chr23:15877515-15877278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:7-245
               
               
               Cow position:chr23:16616589-16616352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:7-247
               
               
               Cow position:chr23:13509906-13510153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:7-248
               
               
               Cow position:chr23:967093-966845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:7-248
               
               
               Cow position:chr23:5874388-5874158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:9-240
               
               
               Cow position:chr23:4752856-4753083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:9-248
               
               
               Cow position:chr23:17786073-17785832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):14, 163

               
               
               Conread position:10-244
               
               
               Cow position:chr23:2716651-2716881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):136, 17

               
               
               Conread position:10-248
               
               
               Cow position:chr23:20155960-20155719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:11-248
               
               
               Cow position:chr23:15219637-15219407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr23:28217544-28217780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr23:31447069-31447305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr23:2312986-2312748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:13-248
               
               
               Cow position:chr23:20302463-20302701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:18-238
               
               
               Cow position:chr23:31594981-31594764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr23:2757861-2758092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr23:2781947-2781718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr23:15177338-15177567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr23:28913660-28913885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr23:29452053-29451826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:19-244
               
               
               Cow position:chr23:11778756-11778981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:20-245
               
               
               Cow position:chr23:2574801-2575027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 172

               
               
               Conread position:32-244
               
               
               Cow position:chr23:4434732-4434945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:47-246
               
               
               Cow position:chr23:19950298-19950099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:47-248
               
               
               Cow position:chr23:23830254-23830450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):116, 86

               
               
               Conread position:59-255
               
               
               Cow position:chr23:22146947-22146751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 192

               
               
               Conread position:60-248
               
               
               Cow position:chr23:4360130-4360318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 139

               
               
               Conread position:66-248
               
               
               Cow position:chr23:16615123-16614942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:75-248
               
               
               Cow position:chr23:4817338-4817512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:81-244
               
               
               Cow position:chr23:2794907-2794744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:548-723
               
               
               Cow position:chr23:20744550-20744381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 42

               
               
               Conread position:548-727
               
               
               Cow position:chr23:3967517-3967347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):172, 71

               
               
               Conread position:548-728
               
               
               Cow position:chr23:11314992-11314811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:548-730
               
               
               Cow position:chr23:3431112-3431297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:548-732
               
               
               Cow position:chr23:5449747-5449929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:551-726
               
               
               Cow position:chr23:24926860-24927030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:553-713
               
               
               Cow position:chr23:23114106-23114271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:553-727
               
               
               Cow position:chr23:38455131-38454958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 67

               
               
               Conread position:625-726
               
               
               Cow position:chr23:12602332-12602229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:2-234
               
               
               Cow position:chr24:13533196-13532965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:2-248
               
               
               Cow position:chr24:36559425-36559178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):136, 45

               
               
               Conread position:3-243
               
               
               Cow position:chr24:6669811-6669573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):142, 37

               
               
               Conread position:3-248
               
               
               Cow position:chr24:12205970-12205729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):194, 26

               
               
               Conread position:4-245
               
               
               Cow position:chr24:148281-148035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:5-241
               
               
               Cow position:chr24:5889212-5888978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:5-245
               
               
               Cow position:chr24:12335436-12335200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:5-245
               
               
               Cow position:chr24:22971429-22971666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:5-248
               
               
               Cow position:chr24:12130635-12130393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr24:16472234-16472477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):140, 35

               
               
               Conread position:5-248
               
               
               Cow position:chr24:19833724-19833968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-249
               
               
               Cow position:chr24:29187622-29187867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:6-248
               
               
               Cow position:chr24:32846054-32846293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:6-256
               
               
               Cow position:chr24:6336191-6336442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):139, 49

               
               
               Conread position:7-247
               
               
               Cow position:chr24:14872627-14872383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:7-248
               
               
               Cow position:chr24:4415189-4414951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):138, 218

               
               
               Conread position:8-229
               
               
               Cow position:chr24:6048932-6049148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):135, 113

               
               
               Conread position:9-245
               
               
               Cow position:chr24:14333810-14334043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):137, 10

               
               
               Conread position:10-243
               
               
               Cow position:chr24:27734842-27735063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:11-246
               
               
               Cow position:chr24:43814104-43814337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr24:6646040-6646276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr24:9188392-9188159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr24:22793512-22793752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:11-248
               
               
               Cow position:chr24:40549214-40549441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:11-249
               
               
               Cow position:chr24:5992889-5992650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:13-174
               
               
               Cow position:chr24:32332369-32332529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 7

               
               
               Conread position:13-210
               
               
               Cow position:chr24:13302193-13301995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:13-249
               
               
               Cow position:chr24:33739003-33738762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:18-205
               
               
               Cow position:chr24:12086551-12086740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:18-237
               
               
               Cow position:chr24:17696625-17696406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:20-244
               
               
               Cow position:chr24:33933718-33933945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):13, 192

               
               
               Conread position:32-248
               
               
               Cow position:chr24:13188532-13188749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:32-248
               
               
               Cow position:chr24:44017892-44018109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):113, 139

               
               
               Conread position:32-249
               
               
               Cow position:chr24:6434597-6434816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):113, 139

               
               
               Conread position:37-245
               
               
               Cow position:chr24:14390189-14389981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 87

               
               
               Conread position:37-248
               
               
               Cow position:chr24:7090801-7090586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):108, 176

               
               
               Conread position:38-248
               
               
               Cow position:chr24:6024738-6024529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):108, 85

               
               
               Conread position:47-249
               
               
               Cow position:chr24:8030525-8030728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 185

               
               
               Conread position:47-249
               
               
               Cow position:chr24:29305949-29305745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:47-249
               
               
               Cow position:chr24:30900748-30900554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:58-223
               
               
               Cow position:chr24:1449645-1449807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 109

               
               
               Conread position:59-248
               
               
               Cow position:chr24:16648592-16648401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:60-237
               
               
               Cow position:chr24:16084268-16084090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-248
               
               
               Cow position:chr24:7061781-7061970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-255
               
               
               Cow position:chr24:6538350-6538548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:61-248
               
               
               Cow position:chr24:12484930-12484742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:65-248
               
               
               Cow position:chr24:6084463-6084647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:74-245
               
               
               Cow position:chr24:6660094-6659922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):72, 99

               
               
               Conread position:81-248
               
               
               Cow position:chr24:14754593-14754424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:95-249
               
               
               Cow position:chr24:23505440-23505285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:525-723
               
               
               Cow position:chr24:33230667-33230866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:547-721
               
               
               Cow position:chr24:39791556-39791735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:552-719
               
               
               Cow position:chr24:18313913-18313747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-245
               
               
               Cow position:chr25:9544356-9544594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:2-225
               
               
               Cow position:chr25:23344613-23344384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:2-248
               
               
               Cow position:chr25:18274690-18274443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr25:33665384-33665193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):141, 77

               
               
               Conread position:5-248
               
               
               Cow position:chr25:12942405-12942161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr25:18889720-18889476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr25:26279554-26279785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:6-153
               
               
               Cow position:chr25:20495024-20495172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:6-235
               
               
               Cow position:chr25:18094498-18094724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:6-244
               
               
               Cow position:chr25:17560340-17560103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):137, 23

               
               
               Conread position:6-248
               
               
               Cow position:chr25:8675214-8675454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:6-248
               
               
               Cow position:chr25:27365154-27365394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:6-258
               
               
               Cow position:chr25:3378047-3377806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:9-248
               
               
               Cow position:chr25:18422323-18422567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 130

               
               
               Conread position:10-249
               
               
               Cow position:chr25:18254679-18254440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:11-184
               
               
               Cow position:chr25:35362133-35361961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-240
               
               
               Cow position:chr25:18194802-18194574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr25:6172199-6172435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr25:13550734-13550498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr25:17589258-17589021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:11-248
               
               
               Cow position:chr25:32580261-32580496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):135, 28

               
               
               Conread position:14-248
               
               
               Cow position:chr25:13781335-13781569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:18-248
               
               
               Cow position:chr25:24659562-24659791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr25:34014179-34013947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:19-248
               
               
               Cow position:chr25:34346707-34346479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:22-244
               
               
               Cow position:chr25:18303710-18303938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:59-245
               
               
               Cow position:chr25:11932753-11932567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):86, 105

               
               
               Conread position:59-248
               
               
               Cow position:chr25:26879541-26879729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:60-248
               
               
               Cow position:chr25:19917427-19917616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr25:27022205-27022036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):65, 125

               
               
               Conread position:80-249
               
               
               Cow position:chr25:20775557-20775387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr25:22147909-22148076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:90-248
               
               
               Cow position:chr25:40918780-40918622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:548-726
               
               
               Cow position:chr25:34169984-34170168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr25:7007950-7008121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr25:19478713-19478891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr25:28597572-28597403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr25:32907976-32908158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:548-730
               
               
               Cow position:chr25:30625045-30624864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):173, 140

               
               
               Conread position:553-728
               
               
               Cow position:chr25:32667228-32667057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr26:9563042-9562799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr26:19351198-19350954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr26:30589056-30588813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:6-248
               
               
               Cow position:chr26:4333986-4333744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):132, 46

               
               
               Conread position:7-248
               
               
               Cow position:chr26:6849117-6848880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:11-194
               
               
               Cow position:chr26:9113055-9113237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:11-244
               
               
               Cow position:chr26:4806244-4806012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-247
               
               
               Cow position:chr26:2352043-2351810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:11-248
               
               
               Cow position:chr26:3030512-3030275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:11-248
               
               
               Cow position:chr26:11253739-11253504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr26:18852536-18852773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr26:18855405-18855642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr26:2198943-2199180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr26:8870199-8870430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr26:8919167-8919404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr26:12588248-12588011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr26:15144443-15144206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr26:30783060-30783297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:87-248
               
               
               Cow position:chr26:21826288-21826127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:548-705
               
               
               Cow position:chr26:2739398-2739241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:548-715
               
               
               Cow position:chr26:33241946-33242117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr26:13705720-13705549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:620-713
               
               
               Cow position:chr26:16783936-16784029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-248
               
               
               Cow position:chr27:1209603-1209846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:4-248
               
               
               Cow position:chr27:25804649-25804413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):166, 15

               
               
               Conread position:5-248
               
               
               Cow position:chr27:14460203-14459960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr27:15638117-15637876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-248
               
               
               Cow position:chr27:26555409-26555170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):141, 69

               
               
               Conread position:7-248
               
               
               Cow position:chr27:9992946-9992706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:8-168
               
               
               Cow position:chr27:27196376-27196218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):137, 19

               
               
               Conread position:8-248
               
               
               Cow position:chr27:6014052-6014282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:11-247
               
               
               Cow position:chr27:27752942-27752708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:11-248
               
               
               Cow position:chr27:15541583-15541819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:11-249
               
               
               Cow position:chr27:16034140-16033903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:14-249
               
               
               Cow position:chr27:1138648-1138875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:18-248
               
               
               Cow position:chr27:893474-893704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:18-248
               
               
               Cow position:chr27:23335430-23335660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:48-249
               
               
               Cow position:chr27:15277774-15277572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 165

               
               
               Conread position:59-248
               
               
               Cow position:chr27:5911168-5911358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:59-248
               
               
               Cow position:chr27:9330028-9330218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):81, 77

               
               
               Conread position:59-248
               
               
               Cow position:chr27:28078750-28078937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 99

               
               
               Conread position:68-245
               
               
               Cow position:chr27:27663257-27663435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:76-245
               
               
               Cow position:chr27:15037268-15037098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:76-245
               
               
               Cow position:chr27:15046493-15046661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:80-249
               
               
               Cow position:chr27:22148398-22148566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):65, 126

               
               
               Conread position:88-248
               
               
               Cow position:chr27:26325402-26325563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:90-248
               
               
               Cow position:chr27:22318083-22318242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 120

               
               
               Conread position:548-713
               
               
               Cow position:chr27:30489494-30489660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:548-723
               
               
               Cow position:chr27:788881-789054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):158, 57

               
               
               Conread position:548-723
               
               
               Cow position:chr27:4720196-4720368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:548-727
               
               
               Cow position:chr27:19717831-19717652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr27:7212797-7212977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:553-713
               
               
               Cow position:chr27:16589791-16589955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:2-248
               
               
               Cow position:chr28:3020457-3020210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 206

               
               
               Conread position:4-248
               
               
               Cow position:chr28:12150600-12150844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:5-197
               
               
               Cow position:chr28:14705374-14705181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-240
               
               
               Cow position:chr28:2988944-2988710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 72

               
               
               Conread position:5-244
               
               
               Cow position:chr28:5937773-5938016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-245
               
               
               Cow position:chr28:5566442-5566687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-245
               
               
               Cow position:chr28:5751408-5751171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-246
               
               
               Cow position:chr28:10229931-10229681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 190

               
               
               Conread position:5-248
               
               
               Cow position:chr28:1505161-1505406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-248
               
               
               Cow position:chr28:5114001-5113757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr28:17667000-17666758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr28:22260853-22260610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:5-248
               
               
               Cow position:chr28:29820031-29820276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-248
               
               
               Cow position:chr28:32792083-32791837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr28:33252609-33252846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr28:34594276-34594519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:6-248
               
               
               Cow position:chr28:1167583-1167341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:6-248
               
               
               Cow position:chr28:5813307-5813550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 39

               
               
               Conread position:6-248
               
               
               Cow position:chr28:7789655-7789412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:6-248
               
               
               Cow position:chr28:10071583-10071823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):162, 21

               
               
               Conread position:6-248
               
               
               Cow position:chr28:10581686-10581444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:7-245
               
               
               Cow position:chr28:7002291-7002527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:7-248
               
               
               Cow position:chr28:5801287-5801538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:7-248
               
               
               Cow position:chr28:7740782-7741020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):138, 14

               
               
               Conread position:7-248
               
               
               Cow position:chr28:17388783-17389023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:8-245
               
               
               Cow position:chr28:12229892-12229663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):215, 23

               
               
               Conread position:8-248
               
               
               Cow position:chr28:10497717-10497481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):12, 158

               
               
               Conread position:9-146
               
               
               Cow position:chr28:29436563-29436428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:10-212
               
               
               Cow position:chr28:10872499-10872702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:11-248
               
               
               Cow position:chr28:1953428-1953664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr28:14750845-14751080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr28:485264-485027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):135, 19

               
               
               Conread position:13-248
               
               
               Cow position:chr28:6780038-6779802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:14-245
               
               
               Cow position:chr28:1814560-1814331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:14-248
               
               
               Cow position:chr28:782702-782932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:14-248
               
               
               Cow position:chr28:14913821-14914057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:18-242
               
               
               Cow position:chr28:13460281-13460504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr28:2083905-2084133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):152, 34

               
               
               Conread position:18-248
               
               
               Cow position:chr28:26425940-26425710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:19-248
               
               
               Cow position:chr28:1387093-1386866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):6, 39

               
               
               Conread position:19-248
               
               
               Cow position:chr28:12409916-12409687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:32-248
               
               
               Cow position:chr28:22233082-22232865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:42-248
               
               
               Cow position:chr28:2724596-2724388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 130

               
               
               Conread position:47-248
               
               
               Cow position:chr28:7822590-7822792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:47-249
               
               
               Cow position:chr28:6538929-6538726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:51-248
               
               
               Cow position:chr28:3191904-3191715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:57-248
               
               
               Cow position:chr28:18100872-18100682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:59-243
               
               
               Cow position:chr28:24667961-24668138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):86, 74

               
               
               Conread position:68-248
               
               
               Cow position:chr28:18520086-18519909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):75, 70

               
               
               Conread position:75-248
               
               
               Cow position:chr28:8720931-8720757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 84

               
               
               Conread position:75-248
               
               
               Cow position:chr28:24588450-24588626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr28:24589212-24589388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:530-723
               
               
               Cow position:chr28:21103801-21103617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:548-726
               
               
               Cow position:chr28:23641220-23641033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:552-726
               
               
               Cow position:chr28:4873296-4873118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:556-730
               
               
               Cow position:chr28:12964620-12964792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:2-239
               
               
               Cow position:chr29:8062233-8061999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):142, 15

               
               
               Conread position:2-248
               
               
               Cow position:chr29:4634138-4633879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:5-238
               
               
               Cow position:chr29:410262-410029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-248
               
               
               Cow position:chr29:2100108-2100352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:5-248
               
               
               Cow position:chr29:2841110-2840870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr29:6266238-6265993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr29:10823706-10823463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr29:14586185-14586422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr29:16022793-16023039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr29:16174626-16174377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:5-248
               
               
               Cow position:chr29:19622984-19622741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr29:19653371-19653609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr29:23976103-23976341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr29:26164559-26164316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr29:32540073-32540315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr29:38227243-38227486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr29:43322818-43323060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):141, 46

               
               
               Conread position:5-251
               
               
               Cow position:chr29:2690163-2690410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:7-238
               
               
               Cow position:chr29:25932280-25932046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:7-248
               
               
               Cow position:chr29:15894590-15894350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):138, 21

               
               
               Conread position:7-248
               
               
               Cow position:chr29:40502718-40502477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:8-245
               
               
               Cow position:chr29:15949285-15949047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:10-243
               
               
               Cow position:chr29:802658-802428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):135, 81

               
               
               Conread position:10-249
               
               
               Cow position:chr29:45587096-45586860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:11-248
               
               
               Cow position:chr29:669793-669558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:11-248
               
               
               Cow position:chr29:18856680-18856444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr29:31181679-31181905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):154, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr29:610348-610112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr29:27250078-27249842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr29:34925743-34925979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:13-249
               
               
               Cow position:chr29:35297135-35297371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:13-250
               
               
               Cow position:chr29:27980653-27980420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:14-245
               
               
               Cow position:chr29:7430946-7430715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:14-248
               
               
               Cow position:chr29:9643485-9643253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:15-248
               
               
               Cow position:chr29:14085862-14085629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 220

               
               
               Conread position:18-245
               
               
               Cow position:chr29:39079435-39079208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:18-248
               
               
               Cow position:chr29:48203-47966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:18-248
               
               
               Cow position:chr29:10647974-10647744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr29:20251436-20251665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:18-248
               
               
               Cow position:chr29:42650542-42650773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr29:42802402-42802633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr29:45459993-45460222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-249
               
               
               Cow position:chr29:21426753-21426522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:19-248
               
               
               Cow position:chr29:16016501-16016274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 71

               
               
               Conread position:19-248
               
               
               Cow position:chr29:34799532-34799303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:20-248
               
               
               Cow position:chr29:5957880-5958105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:31-248
               
               
               Cow position:chr29:5982423-5982211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:32-248
               
               
               Cow position:chr29:15968578-15968361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:32-249
               
               
               Cow position:chr29:19885353-19885569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):113, 124

               
               
               Conread position:47-248
               
               
               Cow position:chr29:7844629-7844831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:60-248
               
               
               Cow position:chr29:13582379-13582567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):83, 162

               
               
               Conread position:60-250
               
               
               Cow position:chr29:16110727-16110917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 64

               
               
               Conread position:113-248
               
               
               Cow position:chr29:3045997-3046131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:422-546
               
               
               Cow position:chr29:31907473-31907601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 123

               
               
               Conread position:547-723
               
               
               Cow position:chr29:20579048-20579226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:548-723
               
               
               Cow position:chr29:8926423-8926248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):152, 69

               
               
               Conread position:548-730
               
               
               Cow position:chr29:11527754-11527561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:548-730
               
               
               Cow position:chr29:39329565-39329378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:553-728
               
               
               Cow position:chr29:13373344-13373523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:554-726
               
               
               Cow position:chr29:35630385-35630211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):37, 46

               
               
               Conread position:554-730
               
               
               Cow position:chr29:28949017-28949190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:613-730
               
               
               Cow position:chr29:10156179-10156062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr3:42052970-42052727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:2-248
               
               
               Cow position:chr3:31415716-31415959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:2-248
               
               
               Cow position:chr3:49272315-49272067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 155

               
               
               Conread position:2-248
               
               
               Cow position:chr3:49333962-49334206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):167, 144

               
               
               Conread position:2-248
               
               
               Cow position:chr3:66991265-66991514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):26, 232

               
               
               Conread position:2-258
               
               
               Cow position:chr3:32616825-32616563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):143, 90

               
               
               Conread position:3-240
               
               
               Cow position:chr3:18728596-18728360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:4-248
               
               
               Cow position:chr3:5883718-5883962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:4-248
               
               
               Cow position:chr3:45774233-45773984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:5-191
               
               
               Cow position:chr3:48060651-48060463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:5-240
               
               
               Cow position:chr3:58947806-58948040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):140, 159

               
               
               Conread position:5-243
               
               
               Cow position:chr3:63003365-63003129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):102, 32

               
               
               Conread position:5-245
               
               
               Cow position:chr3:57484549-57484310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-245
               
               
               Cow position:chr3:83233055-83232818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:5-246
               
               
               Cow position:chr3:52863952-52863714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):141, 17

               
               
               Conread position:5-248
               
               
               Cow position:chr3:594757-595001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr3:5954005-5953763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr3:6685987-6686231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 142

               
               
               Conread position:5-248
               
               
               Cow position:chr3:18811681-18811925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr3:19756778-19756533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr3:21182506-21182269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr3:34030718-34030474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:5-248
               
               
               Cow position:chr3:36881741-36881494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr3:45032917-45033159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):138, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr3:53515794-53516030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:5-248
               
               
               Cow position:chr3:59861547-59861790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr3:64017184-64016945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr3:78027229-78027000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-378
               
               
               Cow position:chr3:64357658-64357292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):140, 42

               
               
               Conread position:6-242
               
               
               Cow position:chr3:12679839-12679603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):139, 29

               
               
               Conread position:6-248
               
               
               Cow position:chr3:77423987-77424229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:7-245
               
               
               Cow position:chr3:49137355-49137123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:7-248
               
               
               Cow position:chr3:2907581-2907346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:7-248
               
               
               Cow position:chr3:6878869-6878645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:7-248
               
               
               Cow position:chr3:19736758-19736998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):138, 21

               
               
               Conread position:7-248
               
               
               Cow position:chr3:37625156-37625393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):138, 76

               
               
               Conread position:7-248
               
               
               Cow position:chr3:64650804-64651044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:8-245
               
               
               Cow position:chr3:24643375-24643606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:8-245
               
               
               Cow position:chr3:42995507-42995259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:8-245
               
               
               Cow position:chr3:75040985-75040748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:8-248
               
               
               Cow position:chr3:7481047-7480811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):137, 19

               
               
               Conread position:8-248
               
               
               Cow position:chr3:18542223-18541984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:8-248
               
               
               Cow position:chr3:23290157-23289918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):137, 23

               
               
               Conread position:8-248
               
               
               Cow position:chr3:24591136-24590903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:9-249
               
               
               Cow position:chr3:18356317-18356077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:9-273
               
               
               Cow position:chr3:21304612-21304351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:10-245
               
               
               Cow position:chr3:5995515-5995282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:11-244
               
               
               Cow position:chr3:3523203-3523434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-245
               
               
               Cow position:chr3:50915510-50915746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):22, 161

               
               
               Conread position:11-246
               
               
               Cow position:chr3:66890781-66890547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:11-248
               
               
               Cow position:chr3:1516337-1516573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr3:6782566-6782801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr3:7168974-7169211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr3:14439579-14439343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:11-248
               
               
               Cow position:chr3:18859596-18859830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr3:20380724-20380961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):134, 23

               
               
               Conread position:11-248
               
               
               Cow position:chr3:41211555-41211317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr3:46861121-46860885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr3:2917643-2917879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr3:22336070-22336307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr3:40339930-40339693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr3:46679613-46679849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr3:49613795-49613557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr3:64027904-64027667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr3:68699791-68699553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:14-245
               
               
               Cow position:chr3:42631610-42631840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:14-248
               
               
               Cow position:chr3:49545016-49544787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:18-248
               
               
               Cow position:chr3:10239848-10240079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr3:40823582-40823811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr3:72630265-72630492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:19-248
               
               
               Cow position:chr3:66620368-66620599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:20-243
               
               
               Cow position:chr3:56340233-56340007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 176

               
               
               Conread position:20-248
               
               
               Cow position:chr3:45974691-45974930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:20-248
               
               
               Cow position:chr3:46502727-46502958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:22-248
               
               
               Cow position:chr3:70887334-70887563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:31-249
               
               
               Cow position:chr3:29331071-29330852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:32-248
               
               
               Cow position:chr3:32622836-32622619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:32-248
               
               
               Cow position:chr3:36117863-36118080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):113, 138

               
               
               Conread position:32-248
               
               
               Cow position:chr3:37969249-37969463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):113, 78

               
               
               Conread position:32-249
               
               
               Cow position:chr3:68873554-68873335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:37-248
               
               
               Cow position:chr3:50011883-50012094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 119

               
               
               Conread position:40-248
               
               
               Cow position:chr3:19721954-19721741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):111, 99

               
               
               Conread position:59-244
               
               
               Cow position:chr3:49678026-49678211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 104

               
               
               Conread position:59-248
               
               
               Cow position:chr3:42432467-42432656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 97

               
               
               Conread position:59-248
               
               
               Cow position:chr3:74439531-74439721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:59-248
               
               
               Cow position:chr3:77548952-77549137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:60-248
               
               
               Cow position:chr3:24314696-24314885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:60-249
               
               
               Cow position:chr3:19878886-19879076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:61-248
               
               
               Cow position:chr3:19939109-19939296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:64-249
               
               
               Cow position:chr3:47081176-47080992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:66-248
               
               
               Cow position:chr3:4737738-4737552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 144

               
               
               Conread position:66-248
               
               
               Cow position:chr3:7158480-7158298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:71-248
               
               
               Cow position:chr3:48842410-48842589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:72-248
               
               
               Cow position:chr3:29578874-29579051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:81-247
               
               
               Cow position:chr3:52654613-52654453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:81-249
               
               
               Cow position:chr3:27918685-27918855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:548-730
               
               
               Cow position:chr3:47753242-47753419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):173, 71

               
               
               Conread position:548-730
               
               
               Cow position:chr3:80072145-80072324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:550-728
               
               
               Cow position:chr3:21302447-21302264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:551-726
               
               
               Cow position:chr3:64648511-64648688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:551-730
               
               
               Cow position:chr3:22716279-22716096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:552-729
               
               
               Cow position:chr3:76415883-76415702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:554-728
               
               
               Cow position:chr3:61467168-61466992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:554-732
               
               
               Cow position:chr3:67930164-67929988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr4:19251538-19251782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:2-248
               
               
               Cow position:chr4:1496413-1496160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:2-248
               
               
               Cow position:chr4:4176776-4177018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:2-248
               
               
               Cow position:chr4:54158626-54158856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 134

               
               
               Conread position:2-250
               
               
               Cow position:chr4:48026379-48026628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:4-248
               
               
               Cow position:chr4:17926270-17926025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:4-248
               
               
               Cow position:chr4:18516882-18517122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):141, 33

               
               
               Conread position:4-248
               
               
               Cow position:chr4:36896352-36896597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:5-226
               
               
               Cow position:chr4:34184536-34184316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):18, 160

               
               
               Conread position:5-248
               
               
               Cow position:chr4:968666-968425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):140, 17

               
               
               Conread position:5-248
               
               
               Cow position:chr4:6490379-6490137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr4:25599516-25599273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):140, 106

               
               
               Conread position:5-248
               
               
               Cow position:chr4:31565318-31565076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:5-248
               
               
               Cow position:chr4:31669257-31669501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-248
               
               
               Cow position:chr4:43319661-43319417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-248
               
               
               Cow position:chr4:45049313-45049069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-248
               
               
               Cow position:chr4:46664499-46664745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr4:60264173-60263935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):141, 75

               
               
               Conread position:7-182
               
               
               Cow position:chr4:54188155-54188313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:7-237
               
               
               Cow position:chr4:44925531-44925297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 201

               
               
               Conread position:7-248
               
               
               Cow position:chr4:22472513-22472757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 175

               
               
               Conread position:7-248
               
               
               Cow position:chr4:26886871-26886632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:7-248
               
               
               Cow position:chr4:43881098-43881338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:8-182
               
               
               Cow position:chr4:47255008-47254838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:8-248
               
               
               Cow position:chr4:19093409-19093648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 23

               
               
               Conread position:10-248
               
               
               Cow position:chr4:16359870-16360111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:11-248
               
               
               Cow position:chr4:3125782-3126018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr4:5880152-5880388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr4:18190392-18190628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr4:18424538-18424302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr4:13548016-13548252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-275
               
               
               Cow position:chr4:602980-603244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:13-248
               
               
               Cow position:chr4:16056585-16056823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:13-249
               
               
               Cow position:chr4:32212156-32212391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:14-245
               
               
               Cow position:chr4:28831341-28831566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:14-248
               
               
               Cow position:chr4:12241222-12240988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:14-263
               
               
               Cow position:chr4:11385744-11385979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):121, 27

               
               
               Conread position:18-245
               
               
               Cow position:chr4:33493824-33494051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr4:355909-356136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr4:12587298-12587528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr4:44725083-44725314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:32-249
               
               
               Cow position:chr4:100928-100710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:32-249
               
               
               Cow position:chr4:4416088-4416298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:38-249
               
               
               Cow position:chr4:9354764-9354552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:47-237
               
               
               Cow position:chr4:65223513-65223322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:47-248
               
               
               Cow position:chr4:16326754-16326552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:59-248
               
               
               Cow position:chr4:21256387-21256578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):86, 174

               
               
               Conread position:60-233
               
               
               Cow position:chr4:27333468-27333642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-248
               
               
               Cow position:chr4:1930590-1930402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-244
               
               
               Cow position:chr4:33072773-33072602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr4:27295463-27295282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr4:13493365-13493541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 83

               
               
               Conread position:77-249
               
               
               Cow position:chr4:6268581-6268404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:80-248
               
               
               Cow position:chr4:41954527-41954696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:80-248
               
               
               Cow position:chr4:41958182-41958351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:89-248
               
               
               Cow position:chr4:12607601-12607443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 72

               
               
               Conread position:92-245
               
               
               Cow position:chr4:57984053-57984207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:548-727
               
               
               Cow position:chr4:48321489-48321309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:548-728
               
               
               Cow position:chr4:5132366-5132540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:552-727
               
               
               Cow position:chr4:8947432-8947617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:552-727
               
               
               Cow position:chr4:62794327-62794162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:552-728
               
               
               Cow position:chr4:19542169-19542345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr5:6155141-6154897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):144, 25

               
               
               Conread position:1-249
               
               
               Cow position:chr5:64781938-64781693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):144, 20

               
               
               Conread position:2-145
               
               
               Cow position:chr5:6180399-6180538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:2-243
               
               
               Cow position:chr5:41358014-41357774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):143, 154

               
               
               Conread position:2-248
               
               
               Cow position:chr5:28023587-28023832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:4-248
               
               
               Cow position:chr5:46776154-46776396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):139, 26

               
               
               Conread position:5-244
               
               
               Cow position:chr5:61278369-61278129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:5-245
               
               
               Cow position:chr5:415642-415402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-245
               
               
               Cow position:chr5:41528680-41528439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr5:2914528-2914768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-248
               
               
               Cow position:chr5:46660122-46660355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):149, 82

               
               
               Conread position:5-248
               
               
               Cow position:chr5:54792555-54792316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr5:55628066-55628309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr5:57482466-57482221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:6-248
               
               
               Cow position:chr5:10918900-10919143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:6-250
               
               
               Cow position:chr5:39246930-39246686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):139, 15

               
               
               Conread position:7-199
               
               
               Cow position:chr5:32945958-32946149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):138, 14

               
               
               Conread position:7-244
               
               
               Cow position:chr5:3504023-3503785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:7-248
               
               
               Cow position:chr5:7273909-7274149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:7-248
               
               
               Cow position:chr5:37732430-37732669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:8-246
               
               
               Cow position:chr5:41957244-41957012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 19

               
               
               Conread position:8-248
               
               
               Cow position:chr5:46738495-46738255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:8-248
               
               
               Cow position:chr5:56857105-56856863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:10-248
               
               
               Cow position:chr5:32309527-32309287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:11-165
               
               
               Cow position:chr5:45182022-45181869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr5:3964533-3964767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr5:4019117-4018882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr5:6588939-6588702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:11-248
               
               
               Cow position:chr5:10482929-10483165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:11-248
               
               
               Cow position:chr5:18666075-18666311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):134, 11

               
               
               Conread position:11-248
               
               
               Cow position:chr5:23960234-23959998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr5:24576996-24577231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr5:27909191-27908955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr5:31706655-31706891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr5:32772563-32772810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr5:48468198-48467962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr5:59482334-59482572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 21

               
               
               Conread position:11-249
               
               
               Cow position:chr5:4089152-4089389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr5:59060699-59060936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:13-248
               
               
               Cow position:chr5:26079140-26078903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 158

               
               
               Conread position:13-248
               
               
               Cow position:chr5:46664086-46664320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):132, 13

               
               
               Conread position:14-243
               
               
               Cow position:chr5:27002125-27002344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):156, 12

               
               
               Conread position:14-248
               
               
               Cow position:chr5:35525909-35526132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:18-244
               
               
               Cow position:chr5:73489467-73489241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr5:4385340-4385565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr5:49119187-49118957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):127, 192

               
               
               Conread position:19-248
               
               
               Cow position:chr5:10776179-10775947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:19-248
               
               
               Cow position:chr5:31101535-31101303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):5, 150

               
               
               Conread position:31-248
               
               
               Cow position:chr5:44459582-44459800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):114, 140

               
               
               Conread position:32-245
               
               
               Cow position:chr5:46644785-46644997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:32-248
               
               
               Cow position:chr5:14380249-14380460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):120, 101

               
               
               Conread position:47-248
               
               
               Cow position:chr5:54932103-54931902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):98, 156

               
               
               Conread position:47-249
               
               
               Cow position:chr5:10843304-10843101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:48-248
               
               
               Cow position:chr5:5667937-5667734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:59-248
               
               
               Cow position:chr5:34696735-34696921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 112

               
               
               Conread position:60-249
               
               
               Cow position:chr5:18122340-18122153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:62-245
               
               
               Cow position:chr5:51770813-51770626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:63-244
               
               
               Cow position:chr5:24098805-24098986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):82, 162

               
               
               Conread position:65-248
               
               
               Cow position:chr5:18401565-18401372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 177

               
               
               Conread position:66-248
               
               
               Cow position:chr5:4069355-4069538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:74-249
               
               
               Cow position:chr5:3786074-3786250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr5:12643576-12643402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:75-248
               
               
               Cow position:chr5:35300242-35300416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:82-244
               
               
               Cow position:chr5:48808578-48808415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:83-249
               
               
               Cow position:chr5:41555456-41555290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:92-248
               
               
               Cow position:chr5:59144531-59144689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:97-248
               
               
               Cow position:chr5:18663957-18664109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:546-723
               
               
               Cow position:chr5:25531276-25531453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 53

               
               
               Conread position:546-723
               
               
               Cow position:chr5:61912242-61912067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:546-728
               
               
               Cow position:chr5:33256410-33256224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:548-712
               
               
               Cow position:chr5:60599138-60598973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 79

               
               
               Conread position:548-726
               
               
               Cow position:chr5:35969598-35969768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:548-729
               
               
               Cow position:chr5:49341983-49341804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:548-730
               
               
               Cow position:chr5:24136781-24136967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 41

               
               
               Conread position:548-730
               
               
               Cow position:chr5:60596066-60595881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:552-728
               
               
               Cow position:chr5:54311406-54311586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr6:44550875-44550626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):144, 39

               
               
               Conread position:1-248
               
               
               Cow position:chr6:65841806-65842050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-242
               
               
               Cow position:chr6:31637327-31637099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:4-248
               
               
               Cow position:chr6:39437768-39438012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:5-248
               
               
               Cow position:chr6:3277728-3277488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr6:5949557-5949315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr6:8201959-8202202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr6:8761083-8760840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:5-248
               
               
               Cow position:chr6:17046277-17046519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):140, 22

               
               
               Conread position:5-248
               
               
               Cow position:chr6:20560890-20560647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr6:25214476-25214720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr6:27529785-27529542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr6:29311713-29311957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr6:34892784-34892540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr6:35876496-35876250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:6-239
               
               
               Cow position:chr6:33995104-33994873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:6-245
               
               
               Cow position:chr6:15477127-15477367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):139, 13

               
               
               Conread position:6-248
               
               
               Cow position:chr6:10643775-10644013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):139, 34

               
               
               Conread position:6-248
               
               
               Cow position:chr6:36526273-36526514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):142, 23

               
               
               Conread position:7-136
               
               
               Cow position:chr6:33389068-33389196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:7-142
               
               
               Cow position:chr6:6543730-6543860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:7-224
               
               
               Cow position:chr6:4508200-4507984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:8-248
               
               
               Cow position:chr6:1822408-1822168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):138, 108

               
               
               Conread position:8-248
               
               
               Cow position:chr6:7179047-7178813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):137, 56

               
               
               Conread position:8-248
               
               
               Cow position:chr6:31565984-31565732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:8-248
               
               
               Cow position:chr6:47042973-47042733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:11-195
               
               
               Cow position:chr6:58408689-58408506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-203
               
               
               Cow position:chr6:28491291-28491100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-242
               
               
               Cow position:chr6:27169804-27170035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-245
               
               
               Cow position:chr6:1411717-1411487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-245
               
               
               Cow position:chr6:2374923-2375157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:11-245
               
               
               Cow position:chr6:40251886-40252117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-245
               
               
               Cow position:chr6:40275311-40275544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:11-247
               
               
               Cow position:chr6:43617938-43618173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr6:331246-331007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 160

               
               
               Conread position:11-248
               
               
               Cow position:chr6:17598056-17597831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:11-248
               
               
               Cow position:chr6:24323158-24322922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr6:39908750-39908986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr6:69221987-69221751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr6:10499501-10499264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:11-249
               
               
               Cow position:chr6:65821903-65821660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:11-249
               
               
               Cow position:chr6:68027015-68027250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:13-249
               
               
               Cow position:chr6:16052100-16052340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:13-249
               
               
               Cow position:chr6:44150336-44150096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:14-192
               
               
               Cow position:chr6:34025505-34025675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:14-245
               
               
               Cow position:chr6:60168939-60168712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:14-248
               
               
               Cow position:chr6:13317274-13317042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:14-248
               
               
               Cow position:chr6:15140948-15140720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:14-248
               
               
               Cow position:chr6:15280320-15280092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:14-248
               
               
               Cow position:chr6:38900940-38900700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):131, 111

               
               
               Conread position:14-248
               
               
               Cow position:chr6:40867329-40867096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:14-248
               
               
               Cow position:chr6:65928194-65928429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:15-248
               
               
               Cow position:chr6:3544715-3544949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 218

               
               
               Conread position:18-246
               
               
               Cow position:chr6:30274943-30274715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):127, 26

               
               
               Conread position:18-248
               
               
               Cow position:chr6:52693259-52693488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:20-248
               
               
               Cow position:chr6:28063566-28063795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:20-249
               
               
               Cow position:chr6:6566840-6567063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 167

               
               
               Conread position:31-248
               
               
               Cow position:chr6:51086187-51086404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):114, 204

               
               
               Conread position:32-248
               
               
               Cow position:chr6:28275226-28275447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:32-249
               
               
               Cow position:chr6:13944149-13944367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):114, 131

               
               
               Conread position:47-246
               
               
               Cow position:chr6:10631315-10631517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):98, 86

               
               
               Conread position:59-245
               
               
               Cow position:chr6:14852308-14852121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):83, 105

               
               
               Conread position:59-248
               
               
               Cow position:chr6:30479378-30479569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:59-249
               
               
               Cow position:chr6:58027028-58027214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):86, 93

               
               
               Conread position:60-244
               
               
               Cow position:chr6:13847295-13847481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-249
               
               
               Cow position:chr6:13104328-13104517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):85, 104

               
               
               Conread position:61-248
               
               
               Cow position:chr6:3889209-3889019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:62-248
               
               
               Cow position:chr6:12666041-12665860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:65-249
               
               
               Cow position:chr6:64715511-64715696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:66-243
               
               
               Cow position:chr6:40315666-40315843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):79, 90

               
               
               Conread position:66-248
               
               
               Cow position:chr6:7141193-7141003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:68-248
               
               
               Cow position:chr6:11724826-11724646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-248
               
               
               Cow position:chr6:65881190-65881371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:72-249
               
               
               Cow position:chr6:26670585-26670407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):74, 101

               
               
               Conread position:74-248
               
               
               Cow position:chr6:25794059-25794232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:74-248
               
               
               Cow position:chr6:27470888-27471064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:75-248
               
               
               Cow position:chr6:44032077-44032251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:80-248
               
               
               Cow position:chr6:48707846-48707677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:86-248
               
               
               Cow position:chr6:38233136-38233295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 81

               
               
               Conread position:88-248
               
               
               Cow position:chr6:21972956-21973116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:89-248
               
               
               Cow position:chr6:24239360-24239520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:91-248
               
               
               Cow position:chr6:185481-185324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:548-724
               
               
               Cow position:chr6:5609367-5609203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr6:34498819-34499002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:2-170
               
               
               Cow position:chr7:59028695-59028860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:2-238
               
               
               Cow position:chr7:58993901-58994133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):143, 38

               
               
               Conread position:2-239
               
               
               Cow position:chr7:20821014-20821253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):10, 64

               
               
               Conread position:2-246
               
               
               Cow position:chr7:7294351-7294117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:2-248
               
               
               Cow position:chr7:5662682-5662924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:2-248
               
               
               Cow position:chr7:26851976-26852221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 12

               
               
               Conread position:2-248
               
               
               Cow position:chr7:63951124-63950869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-249
               
               
               Cow position:chr7:1404292-1404052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):140, 16

               
               
               Conread position:5-233
               
               
               Cow position:chr7:59683591-59683811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:5-243
               
               
               Cow position:chr7:5183717-5183955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-244
               
               
               Cow position:chr7:14139289-14139049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-244
               
               
               Cow position:chr7:46901769-46901530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-245
               
               
               Cow position:chr7:48634746-48634984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:5-248
               
               
               Cow position:chr7:446319-446078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr7:1372340-1372092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr7:4415686-4415928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):99, 160

               
               
               Conread position:5-248
               
               
               Cow position:chr7:8144932-8144689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-248
               
               
               Cow position:chr7:13537272-13537030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr7:21127351-21127109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr7:21985711-21985957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr7:34149410-34149654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr7:34486226-34486470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr7:51014580-51014824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:5-249
               
               
               Cow position:chr7:21234700-21234455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:6-180
               
               
               Cow position:chr7:55280030-55279857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):139, 31

               
               
               Conread position:6-246
               
               
               Cow position:chr7:67812872-67813110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:6-248
               
               
               Cow position:chr7:10431105-10430869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:6-248
               
               
               Cow position:chr7:20305183-20304934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:6-248
               
               
               Cow position:chr7:33072975-33072731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 154

               
               
               Conread position:7-239
               
               
               Cow position:chr7:54603167-54603397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:8-245
               
               
               Cow position:chr7:58377449-58377215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:8-248
               
               
               Cow position:chr7:30302902-30303133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:9-179
               
               
               Cow position:chr7:19048225-19048065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:11-248
               
               
               Cow position:chr7:16559-16324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:11-248
               
               
               Cow position:chr7:6648343-6648107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr7:20515459-20515223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr7:25439823-25440059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):135, 28

               
               
               Conread position:11-248
               
               
               Cow position:chr7:61559526-61559762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr7:61808542-61808781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:11-249
               
               
               Cow position:chr7:3234370-3234133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr7:3300843-3300606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr7:11446869-11447107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:11-301
               
               
               Cow position:chr7:43830712-43830420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:14-237
               
               
               Cow position:chr7:29470783-29471000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:14-248
               
               
               Cow position:chr7:41875949-41875717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 131

               
               
               Conread position:17-248
               
               
               Cow position:chr7:65338948-65338725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:18-248
               
               
               Cow position:chr7:19924501-19924269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:18-248
               
               
               Cow position:chr7:21929468-21929698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr7:33405916-33405686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr7:39792081-39792313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr7:45948826-45948597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr7:55537592-55537367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):127, 8

               
               
               Conread position:18-248
               
               
               Cow position:chr7:67799177-67799406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:27-248
               
               
               Cow position:chr7:27584393-27584167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:32-245
               
               
               Cow position:chr7:21320488-21320702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:32-248
               
               
               Cow position:chr7:60463481-60463698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:34-248
               
               
               Cow position:chr7:25250439-25250655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:47-248
               
               
               Cow position:chr7:20799099-20798897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):98, 123

               
               
               Conread position:47-248
               
               
               Cow position:chr7:38536751-38536953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:59-244
               
               
               Cow position:chr7:23836930-23837115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):86, 169

               
               
               Conread position:59-248
               
               
               Cow position:chr7:994882-995073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:60-248
               
               
               Cow position:chr7:7257553-7257734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:60-250
               
               
               Cow position:chr7:65811207-65811388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:61-244
               
               
               Cow position:chr7:1450737-1450921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:65-245
               
               
               Cow position:chr7:64241419-64241240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:66-244
               
               
               Cow position:chr7:32728132-32727960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:66-245
               
               
               Cow position:chr7:53991573-53991754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:67-249
               
               
               Cow position:chr7:68480927-68481110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:68-249
               
               
               Cow position:chr7:24808083-24807901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:75-249
               
               
               Cow position:chr7:60794927-60794751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr7:525353-525527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:82-249
               
               
               Cow position:chr7:11466389-11466220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:89-245
               
               
               Cow position:chr7:6489582-6489738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:427-546
               
               
               Cow position:chr7:5175900-5175777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 113

               
               
               Conread position:548-728
               
               
               Cow position:chr7:17713389-17713217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr7:34422189-34422005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:548-730
               
               
               Cow position:chr7:7768136-7767954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:548-730
               
               
               Cow position:chr7:9185748-9185939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:548-730
               
               
               Cow position:chr7:53806741-53806559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:552-712
               
               
               Cow position:chr7:11015768-11015928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:553-723
               
               
               Cow position:chr7:8293065-8292902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 56

               
               
               Conread position:559-727
               
               
               Cow position:chr7:40656390-40656226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):162, 60

               
               
               Conread position:608-728
               
               
               Cow position:chr7:1804600-1804480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr8:24874627-24874375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:2-237
               
               
               Cow position:chr8:38585818-38585584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:2-238
               
               
               Cow position:chr8:38577891-38577652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 141

               
               
               Conread position:2-247
               
               
               Cow position:chr8:19188720-19188973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:3-192
               
               
               Cow position:chr8:45692661-45692472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:3-243
               
               
               Cow position:chr8:11564046-11564287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:4-248
               
               
               Cow position:chr8:33588872-33589117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:5-245
               
               
               Cow position:chr8:24419708-24419466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):140, 157

               
               
               Conread position:5-246
               
               
               Cow position:chr8:25522898-25523142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr8:3856517-3856273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:5-248
               
               
               Cow position:chr8:10743131-10742888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr8:12449447-12449690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:5-248
               
               
               Cow position:chr8:17311517-17311762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:5-248
               
               
               Cow position:chr8:23771134-23771377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:5-248
               
               
               Cow position:chr8:25776174-25775930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr8:32319050-32318814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr8:36636045-36635802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr8:38390867-38391108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:5-248
               
               
               Cow position:chr8:38606700-38606457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):140, 199

               
               
               Conread position:5-248
               
               
               Cow position:chr8:39195718-39195472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr8:42484411-42484655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr8:44244074-44243831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr8:51667796-51667552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr8:60060879-60061119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr8:61034517-61034276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):141, 16

               
               
               Conread position:5-249
               
               
               Cow position:chr8:30891821-30891579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:6-245
               
               
               Cow position:chr8:4686895-4687136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:6-248
               
               
               Cow position:chr8:7161392-7161634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:6-248
               
               
               Cow position:chr8:9133824-9133584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 189

               
               
               Conread position:6-248
               
               
               Cow position:chr8:42419936-42419694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):139, 76

               
               
               Conread position:6-248
               
               
               Cow position:chr8:45160577-45160331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 168

               
               
               Conread position:7-231
               
               
               Cow position:chr8:12717466-12717686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:7-248
               
               
               Cow position:chr8:11969775-11969542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-248
               
               
               Cow position:chr8:46944416-46944171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):138, 19

               
               
               Conread position:7-248
               
               
               Cow position:chr8:49214930-49215177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:8-245
               
               
               Cow position:chr8:8911009-8911245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 43

               
               
               Conread position:8-248
               
               
               Cow position:chr8:12542943-12542713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):157, 18

               
               
               Conread position:10-248
               
               
               Cow position:chr8:11832200-11832446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:10-248
               
               
               Cow position:chr8:25408229-25408467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):136, 41

               
               
               Conread position:11-242
               
               
               Cow position:chr8:27578902-27579127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-244
               
               
               Cow position:chr8:47074768-47075001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:11-248
               
               
               Cow position:chr8:1319545-1319780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr8:6683947-6684183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr8:9735747-9735983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr8:15711916-15711680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr8:32437580-32437348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:11-248
               
               
               Cow position:chr8:37931591-37931827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr8:45797815-45797579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr8:1153807-1153572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr8:2886251-2886487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr8:6065268-6065031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:11-249
               
               
               Cow position:chr8:8518083-8517846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr8:34348178-34348415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:13-262
               
               
               Cow position:chr8:9275512-9275761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:14-248
               
               
               Cow position:chr8:19050985-19051219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:14-248
               
               
               Cow position:chr8:19330245-19330478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:18-248
               
               
               Cow position:chr8:5016694-5016924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr8:14591389-14591162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr8:50994299-50994524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:20-245
               
               
               Cow position:chr8:8229269-8229042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 153

               
               
               Conread position:20-248
               
               
               Cow position:chr8:2170867-2170635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 147

               
               
               Conread position:20-256
               
               
               Cow position:chr8:11802332-11802568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):13, 138

               
               
               Conread position:27-248
               
               
               Cow position:chr8:47661803-47661582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:32-249
               
               
               Cow position:chr8:47069286-47069069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:47-248
               
               
               Cow position:chr8:1348700-1348494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):98, 150

               
               
               Conread position:47-248
               
               
               Cow position:chr8:30487849-30487643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 151

               
               
               Conread position:47-248
               
               
               Cow position:chr8:32631493-32631291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:47-249
               
               
               Cow position:chr8:8556614-8556410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:48-245
               
               
               Cow position:chr8:24915800-24915602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:56-245
               
               
               Cow position:chr8:44694360-44694551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:58-249
               
               
               Cow position:chr8:47885574-47885765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:59-248
               
               
               Cow position:chr8:42164260-42164072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:59-248
               
               
               Cow position:chr8:58186662-58186475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:60-248
               
               
               Cow position:chr8:9275729-9275919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:60-248
               
               
               Cow position:chr8:10748911-10749098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):86, 74

               
               
               Conread position:60-248
               
               
               Cow position:chr8:11821866-11822051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:60-248
               
               
               Cow position:chr8:21158280-21158097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:62-248
               
               
               Cow position:chr8:50930575-50930388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:67-248
               
               
               Cow position:chr8:34108403-34108588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:68-248
               
               
               Cow position:chr8:8401554-8401373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:68-248
               
               
               Cow position:chr8:14928323-14928142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:75-246
               
               
               Cow position:chr8:22571748-22571576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr8:50288357-50288185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 82

               
               
               Conread position:86-248
               
               
               Cow position:chr8:8315876-8315712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:87-248
               
               
               Cow position:chr8:44663102-44662939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:94-237
               
               
               Cow position:chr8:16086934-16087073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:113-243
               
               
               Cow position:chr8:58296906-58296773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:548-723
               
               
               Cow position:chr8:11927179-11927347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:548-723
               
               
               Cow position:chr8:43153639-43153464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:548-730
               
               
               Cow position:chr8:15182396-15182583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:548-730
               
               
               Cow position:chr8:46235746-46235923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):167, 69

               
               
               Conread position:548-732
               
               
               Cow position:chr8:19010786-19010606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:550-727
               
               
               Cow position:chr8:45232602-45232781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:551-707
               
               
               Cow position:chr8:46191004-46190838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:554-728
               
               
               Cow position:chr8:18170959-18170784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:1-245
               
               
               Cow position:chr9:37162664-37162423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):201, 36

               
               
               Conread position:2-248
               
               
               Cow position:chr9:1980134-1980379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:2-248
               
               
               Cow position:chr9:3566704-3566447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:2-248
               
               
               Cow position:chr9:47002337-47002584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:2-249
               
               
               Cow position:chr9:42556067-42556317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:4-245
               
               
               Cow position:chr9:4532641-4532883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:5-248
               
               
               Cow position:chr9:6830358-6830116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chr9:7002933-7003177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr9:10321959-10322194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr9:13476737-13476492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr9:16175918-16176160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr9:18509652-18509407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr9:29628596-29628357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:5-248
               
               
               Cow position:chr9:30672519-30672758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:5-248
               
               
               Cow position:chr9:44818335-44818571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:5-248
               
               
               Cow position:chr9:51182043-51181796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:5-248
               
               
               Cow position:chr9:59174009-59173758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:6-244
               
               
               Cow position:chr9:59425919-59426157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:6-246
               
               
               Cow position:chr9:7012865-7013099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):136, 29

               
               
               Conread position:6-248
               
               
               Cow position:chr9:22653718-22653961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:6-255
               
               
               Cow position:chr9:20308997-20308755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:7-239
               
               
               Cow position:chr9:28688254-28688490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):138, 25

               
               
               Conread position:7-248
               
               
               Cow position:chr9:3393465-3393220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:7-248
               
               
               Cow position:chr9:27034834-27035074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):139, 37

               
               
               Conread position:7-248
               
               
               Cow position:chr9:29328813-29329049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:7-248
               
               
               Cow position:chr9:59536250-59536485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):135, 19

               
               
               Conread position:8-243
               
               
               Cow position:chr9:3803492-3803727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):137, 51

               
               
               Conread position:8-245
               
               
               Cow position:chr9:6050893-6050659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):137, 19

               
               
               Conread position:8-248
               
               
               Cow position:chr9:3354532-3354290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):138, 23

               
               
               Conread position:8-248
               
               
               Cow position:chr9:4281928-4282165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):135, 51

               
               
               Conread position:8-248
               
               
               Cow position:chr9:28021950-28022193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:8-248
               
               
               Cow position:chr9:59511538-59511777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 37

               
               
               Conread position:9-260
               
               
               Cow position:chr9:9646323-9646573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 8

               
               
               Conread position:10-248
               
               
               Cow position:chr9:7061940-7061700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:11-212
               
               
               Cow position:chr9:2487978-2487782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:11-245
               
               
               Cow position:chr9:1076045-1075812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr9:131037-130800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):125, 26

               
               
               Conread position:11-248
               
               
               Cow position:chr9:222374-222140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-248
               
               
               Cow position:chr9:780652-780416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr9:1251842-1251608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr9:3006093-3005855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:11-248
               
               
               Cow position:chr9:17064231-17063999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr9:25755071-25754835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr9:28678125-28678361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chr9:30826834-30827068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr9:49177675-49177439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr9:51210834-51211070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chr9:60651560-60651324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:11-249
               
               
               Cow position:chr9:25035693-25035456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chr9:27934241-27934477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-249
               
               
               Cow position:chr9:31064585-31064822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:11-249
               
               
               Cow position:chr9:36724654-36724891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):134, 11

               
               
               Conread position:13-249
               
               
               Cow position:chr9:16268525-16268761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):133, 19

               
               
               Conread position:14-248
               
               
               Cow position:chr9:42309844-42310076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):131, 12

               
               
               Conread position:15-248
               
               
               Cow position:chr9:37971049-37970816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:18-237
               
               
               Cow position:chr9:1995749-1995531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:18-248
               
               
               Cow position:chr9:29028036-29027810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-248
               
               
               Cow position:chr9:42569063-42569295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:18-248
               
               
               Cow position:chr9:60277857-60277628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:18-249
               
               
               Cow position:chr9:25023136-25022908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:19-248
               
               
               Cow position:chr9:9013264-9013492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:19-248
               
               
               Cow position:chr9:64018300-64018073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:28-243
               
               
               Cow position:chr9:4650941-4650727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:51-245
               
               
               Cow position:chr9:6974917-6975113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 62

               
               
               Conread position:59-248
               
               
               Cow position:chr9:64119433-64119612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:60-226
               
               
               Cow position:chr9:163304-163137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 111

               
               
               Conread position:60-248
               
               
               Cow position:chr9:25484070-25484259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-248
               
               
               Cow position:chr9:28440008-28440196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):85, 111

               
               
               Conread position:60-248
               
               
               Cow position:chr9:45873546-45873734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:61-245
               
               
               Cow position:chr9:60464425-60464242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:66-248
               
               
               Cow position:chr9:59455055-59454872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:68-248
               
               
               Cow position:chr9:3543052-3543233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):77, 140

               
               
               Conread position:68-248
               
               
               Cow position:chr9:31807780-31807959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 18

               
               
               Conread position:68-249
               
               
               Cow position:chr9:12061775-12061957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:75-249
               
               
               Cow position:chr9:50790928-50791103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:91-249
               
               
               Cow position:chr9:34722146-34722301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):143, 53

               
               
               Conread position:548-724
               
               
               Cow position:chr9:55354600-55354423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:548-728
               
               
               Cow position:chr9:8562811-8562628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:548-728
               
               
               Cow position:chr9:23840405-23840579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:548-729
               
               
               Cow position:chr9:4267993-4268178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:548-729
               
               
               Cow position:chr9:19067772-19067592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):173, 41

               
               
               Conread position:548-730
               
               
               Cow position:chr9:34265084-34264906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):173, 101

               
               
               Conread position:551-727
               
               
               Cow position:chr9:18226749-18226923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:554-710
               
               
               Cow position:chr9:56773059-56772905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1-248
               
               
               Cow position:chrX:20697041-20696805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:1-248
               
               
               Cow position:chrX:24112781-24112533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:2-166
               
               
               Cow position:chrX:41888910-41888740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 142

               
               
               Conread position:2-238
               
               
               Cow position:chrX:29853515-29853278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:2-248
               
               
               Cow position:chrX:6282689-6282451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):141, 53

               
               
               Conread position:2-248
               
               
               Cow position:chrX:13417375-13417130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:4-245
               
               
               Cow position:chrX:21304475-21304234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):141, 24

               
               
               Conread position:4-248
               
               
               Cow position:chrX:8454803-8455047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):141, 24

               
               
               Conread position:5-239
               
               
               Cow position:chrX:22488238-22488473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-239
               
               
               Cow position:chrX:29285495-29285728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):140, 202

               
               
               Conread position:5-244
               
               
               Cow position:chrX:44387177-44387419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 205

               
               
               Conread position:5-246
               
               
               Cow position:chrX:2012602-2012366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):140, 52

               
               
               Conread position:5-248
               
               
               Cow position:chrX:2536397-2536152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):140, 154

               
               
               Conread position:5-248
               
               
               Cow position:chrX:21222985-21223222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chrX:21829581-21829825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:5-248
               
               
               Cow position:chrX:23041066-23040828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chrX:23277077-23277320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:5-248
               
               
               Cow position:chrX:23391542-23391298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chrX:26758548-26758306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:5-248
               
               
               Cow position:chrX:29096258-29096502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chrX:30183837-30183593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:5-248
               
               
               Cow position:chrX:30232051-30231801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:6-139
               
               
               Cow position:chrX:28872966-28872833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:6-248
               
               
               Cow position:chrX:10417246-10416998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 187

               
               
               Conread position:7-137
               
               
               Cow position:chrX:29814910-29815042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:7-219
               
               
               Cow position:chrX:28603398-28603190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:7-248
               
               
               Cow position:chrX:7751954-7752193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:7-248
               
               
               Cow position:chrX:12669803-12669559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):138, 30

               
               
               Conread position:7-248
               
               
               Cow position:chrX:15179377-15179131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:7-248
               
               
               Cow position:chrX:29779429-29779197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 70

               
               
               Conread position:7-249
               
               
               Cow position:chrX:6873019-6872778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:7-249
               
               
               Cow position:chrX:31082027-31082271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):131, 18

               
               
               Conread position:7-249
               
               
               Cow position:chrX:32067102-32066867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:8-223
               
               
               Cow position:chrX:27079054-27079264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:8-243
               
               
               Cow position:chrX:6250372-6250136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 150

               
               
               Conread position:8-248
               
               
               Cow position:chrX:12478781-12479020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:8-248
               
               
               Cow position:chrX:16699361-16699601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:9-248
               
               
               Cow position:chrX:13053086-13053317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):136, 82

               
               
               Conread position:9-249
               
               
               Cow position:chrX:3421129-3420894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 19

               
               
               Conread position:10-248
               
               
               Cow position:chrX:13413076-13412838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:11-164
               
               
               Cow position:chrX:982696-982848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-209
               
               
               Cow position:chrX:8670649-8670846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:11-236
               
               
               Cow position:chrX:29947765-29947989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-237
               
               
               Cow position:chrX:12654702-12654477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-245
               
               
               Cow position:chrX:11433759-11433992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-245
               
               
               Cow position:chrX:12280212-12279979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-245
               
               
               Cow position:chrX:12353298-12353531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-246
               
               
               Cow position:chrX:5323665-5323431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:11-248
               
               
               Cow position:chrX:2101917-2102152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chrX:2604106-2604342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chrX:7093656-7093892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chrX:8479707-8479944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:11-248
               
               
               Cow position:chrX:11464944-11464708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chrX:12343014-12343248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chrX:17478464-17478228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chrX:20315997-20315768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:11-248
               
               
               Cow position:chrX:21340462-21340699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chrX:22525546-22525310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-248
               
               
               Cow position:chrX:22619250-22619014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:11-248
               
               
               Cow position:chrX:26400123-26399883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:11-248
               
               
               Cow position:chrX:27426262-27426026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chrX:28585038-28585274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-248
               
               
               Cow position:chrX:28634358-28634123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:11-248
               
               
               Cow position:chrX:30055678-30055441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:11-248
               
               
               Cow position:chrX:30173613-30173377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:11-248
               
               
               Cow position:chrX:35529920-35530156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):135, 14

               
               
               Conread position:11-249
               
               
               Cow position:chrX:2562799-2562562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chrX:5863456-5863692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:11-249
               
               
               Cow position:chrX:10531500-10531263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:11-249
               
               
               Cow position:chrX:13076639-13076402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:11-249
               
               
               Cow position:chrX:13097213-13096976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:11-249
               
               
               Cow position:chrX:13398062-13397825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:11-249
               
               
               Cow position:chrX:16812537-16812299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chrX:18219455-18219692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chrX:18659725-18659487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:11-249
               
               
               Cow position:chrX:28758583-28758346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:11-249
               
               
               Cow position:chrX:31493478-31493715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:11-249
               
               
               Cow position:chrX:37812220-37812456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:11-249
               
               
               Cow position:chrX:37849072-37849309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):134, 21

               
               
               Conread position:12-248
               
               
               Cow position:chrX:30011098-30011333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):134, 23

               
               
               Conread position:13-184
               
               
               Cow position:chrX:31187190-31187016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 159

               
               
               Conread position:13-248
               
               
               Cow position:chrX:1833884-1834112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:13-248
               
               
               Cow position:chrX:9125414-9125658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:13-248
               
               
               Cow position:chrX:23070776-23071011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:13-248
               
               
               Cow position:chrX:28562159-28561921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):12, 186

               
               
               Conread position:13-248
               
               
               Cow position:chrX:33214338-33214577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:13-249
               
               
               Cow position:chrX:12803804-12803569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:14-183
               
               
               Cow position:chrX:6885233-6885058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:14-248
               
               
               Cow position:chrX:29885051-29885287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:15-244
               
               
               Cow position:chrX:40246814-40246584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 156

               
               
               Conread position:18-245
               
               
               Cow position:chrX:320538-320761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:18-245
               
               
               Cow position:chrX:2482566-2482338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:18-245
               
               
               Cow position:chrX:26767127-26766901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:18-246
               
               
               Cow position:chrX:26427577-26427346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):121, 191

               
               
               Conread position:18-248
               
               
               Cow position:chrX:970838-971069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:18-248
               
               
               Cow position:chrX:15127171-15126942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:18-248
               
               
               Cow position:chrX:26528047-26528275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:19-197
               
               
               Cow position:chrX:18954453-18954275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:19-248
               
               
               Cow position:chrX:24484340-24484116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:20-248
               
               
               Cow position:chrX:14594836-14595065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:20-249
               
               
               Cow position:chrX:20359984-20359756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):125, 8

               
               
               Conread position:21-244
               
               
               Cow position:chrX:5299152-5298927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:22-248
               
               
               Cow position:chrX:23019396-23019624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 97

               
               
               Conread position:31-132
               
               
               Cow position:chrX:2380721-2380820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:32-244
               
               
               Cow position:chrX:31198525-31198737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:32-248
               
               
               Cow position:chrX:16363047-16362830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:32-248
               
               
               Cow position:chrX:39563854-39563637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:38-248
               
               
               Cow position:chrX:3376030-3375818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:47-245
               
               
               Cow position:chrX:5336394-5336195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:47-245
               
               
               Cow position:chrX:22611039-22611238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:47-246
               
               
               Cow position:chrX:5394909-5394708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:47-248
               
               
               Cow position:chrX:7030278-7030478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):98, 109

               
               
               Conread position:47-248
               
               
               Cow position:chrX:7481724-7481926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:48-248
               
               
               Cow position:chrX:21490290-21490491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:59-248
               
               
               Cow position:chrX:29950480-29950288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:60-245
               
               
               Cow position:chrX:22130138-22129946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:60-248
               
               
               Cow position:chrX:24089506-24089694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 157

               
               
               Conread position:60-249
               
               
               Cow position:chrX:15980845-15980655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:61-249
               
               
               Cow position:chrX:8588284-8588473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:63-222
               
               
               Cow position:chrX:11149209-11149049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:68-243
               
               
               Cow position:chrX:22582613-22582434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:68-244
               
               
               Cow position:chrX:21589087-21589264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:68-248
               
               
               Cow position:chrX:1547094-1547275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:68-248
               
               
               Cow position:chrX:30056773-30056954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:71-255
               
               
               Cow position:chrX:19873952-19874129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):74, 24

               
               
               Conread position:72-248
               
               
               Cow position:chrX:20720107-20720284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:74-248
               
               
               Cow position:chrX:5833312-5833137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:75-240
               
               
               Cow position:chrX:16237903-16238069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:75-248
               
               
               Cow position:chrX:12288274-12288100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:76-249
               
               
               Cow position:chrX:9008459-9008633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:78-248
               
               
               Cow position:chrX:27495052-27495218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:80-249
               
               
               Cow position:chrX:29911300-29911130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:81-248
               
               
               Cow position:chrX:3407688-3407519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:82-248
               
               
               Cow position:chrX:21579603-21579768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:86-245
               
               
               Cow position:chrX:14786751-14786594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:88-249
               
               
               Cow position:chrX:1942609-1942450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:92-248
               
               
               Cow position:chrX:30711727-30711884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:93-249
               
               
               Cow position:chrX:41851055-41850898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:100-248
               
               
               Cow position:chrX:507186-507037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:125-249
               
               
               Cow position:chrX:28871007-28870882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:548-713
               
               
               Cow position:chrX:616192-616022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:548-723
               
               
               Cow position:chrX:40531976-40531799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:548-730
               
               
               Cow position:chrX:31983518-31983343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):173, 71

               
               
               Conread position:548-730
               
               
               Cow position:chrX:34411913-34412082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:551-727
               
               
               Cow position:chrX:32821098-32821271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:551-728
               
               
               Cow position:chrX:7695819-7695996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):170, 58

               
               
               Conread position:552-712
               
               
               Cow position:chrX:40269563-40269724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 124

               
               
               Conread position:552-713
               
               
               Cow position:chrX:23498609-23498446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 140

               
               
               Conread position:552-728
               
               
               Cow position:chrX:23182912-23182735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:552-728
               
               
               Cow position:chrX:40480801-40480614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:552-729
               
               
               Cow position:chrX:16348500-16348320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:552-730
               
               
               Cow position:chrX:37062514-37062334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):54, 176