Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050M23.5 |
| Conread position: | 348-514 |
| Cow position: | chr11:75847407-75847570 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 385-547 |
| Cow position: | chr13:22118987-22119148 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 385-547 |
| Cow position: | chr13:24158259-24158420 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 384-519 |
| Cow position: | chr14:665835-665700 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-519 |
| Cow position: | chr14:3064398-3064264 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-520 |
| Cow position: | chr14:3131102-3130967 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-519 |
| Cow position: | chr14:25776410-25776534 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-519 |
| Cow position: | chr14:25832155-25832279 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 395-519 |
| Cow position: | chr14:25888970-25889094 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-554 |
| Cow position: | chr14:25871867-25872026 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 131, 140 |
| Conread position: | 395-519 |
| Cow position: | chr17:44465954-44466078 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 276-388 |
| Cow position: | chr18:51863156-51863268 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 378-530 |
| Cow position: | chr18:49038994-49038841 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 379-516 |
| Cow position: | chr18:55531951-55531815 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 380-530 |
| Cow position: | chr18:50278841-50278991 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 380-536 |
| Cow position: | chr18:42728299-42728143 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 381-685 |
| Cow position: | chr18:51753311-51753015 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 166 |
| Conread position: | 384-493 |
| Cow position: | chr18:51373603-51373494 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-516 |
| Cow position: | chr18:44195351-44195219 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-519 |
| Cow position: | chr18:56332268-56332133 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-536 |
| Cow position: | chr18:50653454-50653302 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-536 |
| Cow position: | chr18:52421795-52421948 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 384-536 |
| Cow position: | chr18:52442014-52442167 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 384-587 |
| Cow position: | chr18:51867649-51867852 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 177 |
| Conread position: | 384-705 |
| Cow position: | chr18:51819674-51819353 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-739 |
| Cow position: | chr18:51844478-51844119 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 184 |
| Conread position: | 384-740 |
| Cow position: | chr18:51796386-51796026 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 0 |
| Conread position: | 384-746 |
| Cow position: | chr18:51396937-51397297 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 274 |
| Conread position: | 385-519 |
| Cow position: | chr18:50052085-50051951 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-530 |
| Cow position: | chr18:50095780-50095925 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-552 |
| Cow position: | chr18:56288182-56288017 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 386-729 |
| Cow position: | chr18:51771803-51771469 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 160 |
| Conread position: | 395-516 |
| Cow position: | chr18:55506800-55506679 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-519 |
| Cow position: | chr18:52015239-52015115 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-521 |
| Cow position: | chr18:33069658-33069532 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-531 |
| Cow position: | chr18:50077716-50077851 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 395-577 |
| Cow position: | chr18:42844429-42844247 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 397-530 |
| Cow position: | chr18:50267453-50267586 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 336-516 |
| Cow position: | chr2:14326083-14325902 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 347-514 |
| Cow position: | chr22:18035949-18035785 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 373-531 |
| Cow position: | chr22:14465221-14465379 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 378-531 |
| Cow position: | chr22:14439800-14439953 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 384-519 |
| Cow position: | chr22:11699012-11699147 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-555 |
| Cow position: | chr22:11634054-11634223 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 148, 137 |
| Conread position: | 357-531 |
| Cow position: | chr25:33159636-33159459 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 367-519 |
| Cow position: | chr25:33295382-33295535 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 369-525 |
| Cow position: | chr25:34425408-34425564 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-529 |
| Cow position: | chr25:36847434-36847299 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 302-514 |
| Cow position: | chr3:48479196-48479408 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-519 |
| Cow position: | chr3:68040902-68041035 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-519 |
| Cow position: | chr6:49358203-49358338 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-545 |
| Cow position: | chr6:49419720-49419869 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 395-521 |
| Cow position: | chr6:49387738-49387864 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 395-519 |
| Cow position: | chr7:18387061-18387185 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 385-521 |
| Cow position: | chr8:45148252-45148388 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 384-588 |
| Cow position: | chrX:9469056-9469259 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 151 |
| Conread position: | 395-522 |
| Cow position: | chrX:25307067-25307194 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |