Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8053L10.5
        

               Conread position:
               1-893
               

               Cow position:
               chr10:1663589-1662666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               938
               

               Alignm identity:
               579
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 69
               

               Conread position:
               1-946
               

               Cow position:
               chr10:32827122-32828086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               993
               

               Alignm identity:
               610
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               38, 59
               

               Conread position:
               2-294
               

               Cow position:
               chr10:20268322-20268019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               84, 66
               

               Conread position:
               2-464
               

               Cow position:
               chr10:19543053-19542586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               79, 27
               

               Conread position:
               2-464
               

               Cow position:
               chr10:65732748-65733220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               300
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               217, 80
               

               Conread position:
               2-472
               

               Cow position:
               chr10:32559549-32560014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               295
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               82, 112
               

               Conread position:
               6-410
               

               Cow position:
               chr10:4560188-4559792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               118, 70
               

               Conread position:
               7-376
               

               Cow position:
               chr10:40821610-40821228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               263
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               77, 61
               

               Conread position:
               7-761
               

               Cow position:
               chr10:25004305-25005085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               800
               

               Alignm identity:
               499
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               117, 25
               

               Conread position:
               8-297
               

               Cow position:
               chr10:53172942-53172641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               202
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-351
               

               Cow position:
               chr10:31855858-31856214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-357
               

               Cow position:
               chr10:61133519-61133870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               75, 157
               

               Conread position:
               8-417
               

               Cow position:
               chr10:57505852-57506263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               287
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               77, 62
               

               Conread position:
               8-429
               

               Cow position:
               chr10:2118648-2118214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-475
               

               Cow position:
               chr10:21738350-21737859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               325
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-476
               

               Cow position:
               chr10:3287740-3287263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               304
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               107, 68
               

               Conread position:
               8-477
               

               Cow position:
               chr10:24100702-24100227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               310
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               200, 41
               

               Conread position:
               8-561
               

               Cow position:
               chr10:46762586-46763144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               375
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-582
               

               Cow position:
               chr10:41879315-41879904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               387
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-766
               

               Cow position:
               chr10:33868808-33868008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               811
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 156
               

               Conread position:
               8-766
               

               Cow position:
               chr10:51950718-51949921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               811
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-783
               

               Cow position:
               chr10:32008454-32009269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               830
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-788
               

               Cow position:
               chr10:38842542-38843360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               828
               

               Alignm identity:
               510
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-828
               

               Cow position:
               chr10:40348278-40347421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               869
               

               Alignm identity:
               539
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-830
               

               Cow position:
               chr10:21426921-21426067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               870
               

               Alignm identity:
               537
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-842
               

               Cow position:
               chr10:35824965-35824088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               890
               

               Alignm identity:
               565
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-881
               

               Cow position:
               chr10:14333466-14332545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               929
               

               Alignm identity:
               577
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-881
               

               Cow position:
               chr10:19142232-19141313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               936
               

               Alignm identity:
               580
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               74, 62
               

               Conread position:
               8-881
               

               Cow position:
               chr10:26293110-26292193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               933
               

               Alignm identity:
               589
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 53
               

               Conread position:
               8-883
               

               Cow position:
               chr10:23848341-23849265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               935
               

               Alignm identity:
               586
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-883
               

               Cow position:
               chr10:32086067-32086980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               926
               

               Alignm identity:
               580
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 69
               

               Conread position:
               8-885
               

               Cow position:
               chr10:32703141-32704063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               935
               

               Alignm identity:
               590
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-893
               

               Cow position:
               chr10:25564174-25563247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               947
               

               Alignm identity:
               592
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               117, 68
               

               Conread position:
               8-893
               

               Cow position:
               chr10:32364319-32365246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               943
               

               Alignm identity:
               598
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 29
               

               Conread position:
               8-893
               

               Cow position:
               chr10:39210139-39211080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               951
               

               Alignm identity:
               598
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-893
               

               Cow position:
               chr10:44706331-44705402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               941
               

               Alignm identity:
               589
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 55
               

               Conread position:
               8-893
               

               Cow position:
               chr10:47909001-47909922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               942
               

               Alignm identity:
               590
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               24, 35
               

               Conread position:
               8-893
               

               Cow position:
               chr10:48375068-48374138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               948
               

               Alignm identity:
               603
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr10:57554960-57554029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               941
               

               Alignm identity:
               588
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-921
               

               Cow position:
               chr10:8292509-8293466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               974
               

               Alignm identity:
               602
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               79, 42
               

               Conread position:
               8-921
               

               Cow position:
               chr10:37772271-37773215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               962
               

               Alignm identity:
               593
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-925
               

               Cow position:
               chr10:51557775-51558741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               978
               

               Alignm identity:
               608
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               11-298
               

               Cow position:
               chr10:13851525-13851824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               200
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               21, 25
               

               Conread position:
               11-320
               

               Cow position:
               chr10:17958463-17958784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               75, 57
               

               Conread position:
               11-881
               

               Cow position:
               chr10:278971-278061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               917
               

               Alignm identity:
               568
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 57
               

               Conread position:
               11-881
               

               Cow position:
               chr10:30683110-30682197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               924
               

               Alignm identity:
               565
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               75, 57
               

               Conread position:
               11-881
               

               Cow position:
               chr10:30719074-30719991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               925
               

               Alignm identity:
               577
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 65
               

               Conread position:
               13-460
               

               Cow position:
               chr10:27787001-27787461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               71, 55
               

               Conread position:
               14-297
               

               Cow position:
               chr10:15488926-15489216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               18, 22
               

               Conread position:
               14-893
               

               Cow position:
               chr10:41159806-41160711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               931
               

               Alignm identity:
               580
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               110, 62
               

               Conread position:
               14-893
               

               Cow position:
               chr10:52827230-52826322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               928
               

               Alignm identity:
               579
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 54
               

               Conread position:
               15-294
               

               Cow position:
               chr10:32280232-32280523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               72, 55
               

               Conread position:
               15-416
               

               Cow position:
               chr10:7896096-7895683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               277
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               17, 21
               

               Conread position:
               15-849
               

               Cow position:
               chr10:62406385-62405513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               882
               

               Alignm identity:
               539
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               109, 61
               

               Conread position:
               15-897
               

               Cow position:
               chr10:41569494-41570412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               933
               

               Alignm identity:
               583
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 52
               

               Conread position:
               16-883
               

               Cow position:
               chr10:1379885-1380795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               926
               

               Alignm identity:
               571
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               71, 54
               

               Conread position:
               16-906
               

               Cow position:
               chr10:58673131-58672203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               948
               

               Alignm identity:
               601
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 55
               

               Conread position:
               16-909
               

               Cow position:
               chr10:24738296-24737378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               943
               

               Alignm identity:
               583
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               25, 6
               

               Conread position:
               16-933
               

               Cow position:
               chr10:57987316-57986347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               978
               

               Alignm identity:
               595
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               65, 52
               

               Conread position:
               19-562
               

               Cow position:
               chr10:7831140-7831671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               373
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               213, 50
               

               Conread position:
               20-410
               

               Cow position:
               chr10:28604215-28604613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               64, 48
               

               Conread position:
               23-893
               

               Cow position:
               chr10:8681014-8681931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               929
               

               Alignm identity:
               587
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 13
               

               Conread position:
               24-910
               

               Cow position:
               chr10:19513626-19514554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               939
               

               Alignm identity:
               591
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 52
               

               Conread position:
               25-934
               

               Cow position:
               chr10:39264066-39264982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               956
               

               Alignm identity:
               596
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               59, 52
               

               Conread position:
               33-400
               

               Cow position:
               chr10:19607950-19607573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               259
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               42-868
               

               Cow position:
               chr10:25651005-25650137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               880
               

               Alignm identity:
               534
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               82, 34
               

               Conread position:
               62-893
               

               Cow position:
               chr10:19842100-19842978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               888
               

               Alignm identity:
               553
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               12, 240
               

               Conread position:
               70-555
               

               Cow position:
               chr10:32580674-32581174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               330
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 88
               

               Conread position:
               77-868
               

               Cow position:
               chr10:49502563-49503340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               814
               

               Alignm identity:
               501
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               36, 26
               

               Conread position:
               85-410
               

               Cow position:
               chr10:27123094-27122759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               213
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               39, 170
               

               Conread position:
               99-574
               

               Cow position:
               chr10:51212605-51213085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 67
               

               Conread position:
               115-397
               

               Cow position:
               chr10:54988347-54988642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               17, 266
               

               Conread position:
               130-788
               

               Cow position:
               chr10:25633336-25632641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               703
               

               Alignm identity:
               437
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               27, 250
               

               Conread position:
               135-527
               

               Cow position:
               chr10:11941044-11940636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 29
               

               Conread position:
               136-410
               

               Cow position:
               chr10:28715746-28716028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               16, 29
               

               Conread position:
               158-540
               

               Cow position:
               chr10:12669186-12669571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               42, 47
               

               Conread position:
               164-411
               

               Cow position:
               chr10:44723968-44723711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 214
               

               Conread position:
               175-893
               

               Cow position:
               chr10:45647411-45648164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               764
               

               Alignm identity:
               477
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               33, 53
               

               Conread position:
               186-396
               

               Cow position:
               chr10:51846591-51846797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               51, 98
               

               Conread position:
               186-555
               

               Cow position:
               chr10:17435853-17436206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               22, 40
               

               Conread position:
               190-557
               

               Cow position:
               chr10:24957208-24956836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               41, 76
               

               Conread position:
               206-843
               

               Cow position:
               chr10:24783295-24782646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               665
               

               Alignm identity:
               419
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               95, 35
               

               Conread position:
               207-620
               

               Cow position:
               chr10:57371171-57370753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               291
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               27, 280
               

               Conread position:
               231-790
               

               Cow position:
               chr10:29755995-29755432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               368
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               16, 68
               

               Conread position:
               236-946
               

               Cow position:
               chr10:51407897-51408612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               750
               

               Alignm identity:
               475
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               35, 53
               

               Conread position:
               257-538
               

               Cow position:
               chr10:10211865-10211571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               48, 27
               

               Conread position:
               260-929
               

               Cow position:
               chr10:13426456-13425808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 16
               

               Conread position:
               393-849
               

               Cow position:
               chr10:19881058-19880604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               292
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               210, 74
               

               Conread position:
               490-946
               

               Cow position:
               chr10:16954683-16955150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               301
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               82, 30
               

               Conread position:
               585-941
               

               Cow position:
               chr10:2364622-2364273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               149, 7
               

               Conread position:
               618-941
               

               Cow position:
               chr10:38866232-38866553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               215
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               185, 136
               

               Conread position:
               619-948
               

               Cow position:
               chr10:60703999-60703671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               158, 140
               

               Conread position:
               621-923
               

               Cow position:
               chr10:1434162-1434467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               81, 65
               

               Conread position:
               621-946
               

               Cow position:
               chr10:19719842-19719511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               621-946
               

               Cow position:
               chr10:54151319-54151639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               169, 18
               

               Conread position:
               625-942
               

               Cow position:
               chr10:4702132-4701822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               172, 181
               

               Conread position:
               626-831
               

               Cow position:
               chr10:7246625-7246422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               164, 34
               

               Conread position:
               628-898
               

               Cow position:
               chr10:23866782-23866507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               12, 19
               

               Conread position:
               628-918
               

               Cow position:
               chr10:25013886-25013591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               98, 177
               

               Conread position:
               628-933
               

               Cow position:
               chr10:9581035-9580724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               179, 168
               

               Conread position:
               632-779
               

               Cow position:
               chr10:7832055-7832202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               8, 12
               

               Conread position:
               634-923
               

               Cow position:
               chr10:13097234-13097526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               70, 7
               

               Conread position:
               690-930
               

               Cow position:
               chr10:28999362-28999124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               113, 69
               

               Conread position:
               699-945
               

               Cow position:
               chr10:23171858-23172111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               30, 137
               

               Conread position:
               702-937
               

               Cow position:
               chr10:282987-282757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 34
               

               Conread position:
               1-270
               

               Cow position:
               chr11:35136166-35136449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               1-946
               

               Cow position:
               chr11:76277223-76276277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               985
               

               Alignm identity:
               616
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 5
               

               Conread position:
               2-407
               

               Cow position:
               chr11:67864262-67863847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               84, 61
               

               Conread position:
               8-291
               

               Cow position:
               chr11:78792051-78791756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-320
               

               Cow position:
               chr11:73135320-73135641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-344
               

               Cow position:
               chr11:2963239-2962906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               115, 38
               

               Conread position:
               8-350
               

               Cow position:
               chr11:3494998-3495347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-411
               

               Cow position:
               chr11:9732658-9732242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               79, 54
               

               Conread position:
               8-411
               

               Cow position:
               chr11:41744574-41744993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-411
               

               Cow position:
               chr11:75392266-75392685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               285
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-460
               

               Cow position:
               chr11:39805732-39806188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               300
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               75, 60
               

               Conread position:
               8-475
               

               Cow position:
               chr11:418707-418223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               318
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               66, 151
               

               Conread position:
               8-475
               

               Cow position:
               chr11:2349966-2350459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               319
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-475
               

               Cow position:
               chr11:25099156-25098663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               332
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-475
               

               Cow position:
               chr11:39585708-39585215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               329
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-475
               

               Cow position:
               chr11:52845558-52846045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               325
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-475
               

               Cow position:
               chr11:67446226-67445735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               315
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               8-476
               

               Cow position:
               chr11:8265535-8266037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               319
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-524
               

               Cow position:
               chr11:41422892-41422363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               263
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-661
               

               Cow position:
               chr11:30254248-30254930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               695
               

               Alignm identity:
               438
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               116, 60
               

               Conread position:
               8-783
               

               Cow position:
               chr11:15987270-15988080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               819
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-832
               

               Cow position:
               chr11:15126831-15127691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               874
               

               Alignm identity:
               544
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-881
               

               Cow position:
               chr11:8819273-8820144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               917
               

               Alignm identity:
               588
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               261, 43
               

               Conread position:
               8-881
               

               Cow position:
               chr11:10850137-10851048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               924
               

               Alignm identity:
               570
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-881
               

               Cow position:
               chr11:17548192-17549092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               920
               

               Alignm identity:
               574
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 59
               

               Conread position:
               8-881
               

               Cow position:
               chr11:32078766-32077849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               927
               

               Alignm identity:
               573
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               79, 68
               

               Conread position:
               8-881
               

               Cow position:
               chr11:44581214-44580299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               929
               

               Alignm identity:
               579
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-883
               

               Cow position:
               chr11:20732205-20731285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               930
               

               Alignm identity:
               581
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 55
               

               Conread position:
               8-885
               

               Cow position:
               chr11:26122904-26121981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               929
               

               Alignm identity:
               573
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 68
               

               Conread position:
               8-893
               

               Cow position:
               chr11:7121950-7121018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               943
               

               Alignm identity:
               592
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-893
               

               Cow position:
               chr11:17105665-17104745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               943
               

               Alignm identity:
               593
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-893
               

               Cow position:
               chr11:27725879-27724956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               938
               

               Alignm identity:
               595
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-893
               

               Cow position:
               chr11:28124528-28125460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               939
               

               Alignm identity:
               577
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr11:38575469-38574540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               942
               

               Alignm identity:
               583
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr11:63391462-63390534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               946
               

               Alignm identity:
               599
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-893
               

               Cow position:
               chr11:67452668-67453600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               940
               

               Alignm identity:
               581
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 527
               

               Conread position:
               8-893
               

               Cow position:
               chr11:84966131-84967053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               935
               

               Alignm identity:
               590
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 68
               

               Conread position:
               8-921
               

               Cow position:
               chr11:19100468-19099511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               974
               

               Alignm identity:
               609
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-921
               

               Cow position:
               chr11:33602616-33601666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               966
               

               Alignm identity:
               606
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-921
               

               Cow position:
               chr11:67296992-67296033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               977
               

               Alignm identity:
               606
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               79, 24
               

               Conread position:
               9-360
               

               Cow position:
               chr11:81318913-81318550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               42, 155
               

               Conread position:
               10-291
               

               Cow position:
               chr11:50835597-50835304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               22, 26
               

               Conread position:
               10-766
               

               Cow position:
               chr11:34796999-34797763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               784
               

               Alignm identity:
               484
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               78, 53
               

               Conread position:
               10-790
               

               Cow position:
               chr11:35332796-35331986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               838
               

               Alignm identity:
               535
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               27, 166
               

               Conread position:
               11-285
               

               Cow position:
               chr11:44515930-44515646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               75, 57
               

               Conread position:
               11-396
               

               Cow position:
               chr11:23873465-23873843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               257
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               135, 76
               

               Conread position:
               11-524
               

               Cow position:
               chr11:35571554-35571021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               356
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               111, 7
               

               Conread position:
               11-893
               

               Cow position:
               chr11:32478796-32477867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               942
               

               Alignm identity:
               588
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               21, 25
               

               Conread position:
               11-946
               

               Cow position:
               chr11:38795855-38796805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               980
               

               Alignm identity:
               598
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               76, 35
               

               Conread position:
               14-297
               

               Cow position:
               chr11:31928195-31928487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               72, 54
               

               Conread position:
               14-475
               

               Cow position:
               chr11:52421492-52421975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               305
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               110, 62
               

               Conread position:
               14-555
               

               Cow position:
               chr11:38600912-38600363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               359
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               110, 62
               

               Conread position:
               14-555
               

               Cow position:
               chr11:47737518-47736971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               366
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               18, 22
               

               Conread position:
               14-893
               

               Cow position:
               chr11:47973832-47972907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               933
               

               Alignm identity:
               580
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 56
               

               Conread position:
               15-272
               

               Cow position:
               chr11:44475924-44475662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               69, 25
               

               Conread position:
               15-407
               

               Cow position:
               chr11:15994186-15994587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               71, 53
               

               Conread position:
               15-410
               

               Cow position:
               chr11:73467394-73466989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               71, 53
               

               Conread position:
               15-851
               

               Cow position:
               chr11:81339363-81338495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               883
               

               Alignm identity:
               538
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               72, 48
               

               Conread position:
               15-881
               

               Cow position:
               chr11:49172478-49171564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               919
               

               Alignm identity:
               550
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               109, 53
               

               Conread position:
               15-881
               

               Cow position:
               chr11:71331526-71332435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               921
               

               Alignm identity:
               567
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               109, 61
               

               Conread position:
               16-300
               

               Cow position:
               chr11:7481806-7482100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               119, 52
               

               Conread position:
               16-893
               

               Cow position:
               chr11:56917967-56917068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               925
               

               Alignm identity:
               584
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 56
               

               Conread position:
               23-475
               

               Cow position:
               chr11:49013032-49012554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               319
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               9, 13
               

               Conread position:
               23-883
               

               Cow position:
               chr11:10699715-10698809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               922
               

               Alignm identity:
               581
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               9, 13
               

               Conread position:
               24-893
               

               Cow position:
               chr11:35143295-35142387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               915
               

               Alignm identity:
               554
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               63, 39
               

               Conread position:
               25-464
               

               Cow position:
               chr11:55484288-55484740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               299
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               127, 43
               

               Conread position:
               25-465
               

               Cow position:
               chr11:12157636-12158089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               301
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               100, 168
               

               Conread position:
               33-504
               

               Cow position:
               chr11:61050408-61050889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               331
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               16, 135
               

               Conread position:
               35-406
               

               Cow position:
               chr11:12176464-12176851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               47, 28
               

               Conread position:
               35-466
               

               Cow position:
               chr11:25791311-25790862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               47, 28
               

               Conread position:
               35-893
               

               Cow position:
               chr11:19062034-19061129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               914
               

               Alignm identity:
               573
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 35
               

               Conread position:
               37-881
               

               Cow position:
               chr11:44155042-44154144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               911
               

               Alignm identity:
               573
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 26
               

               Conread position:
               46-881
               

               Cow position:
               chr11:10957872-10958763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               900
               

               Alignm identity:
               553
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               41, 30
               

               Conread position:
               52-945
               

               Cow position:
               chr11:26052460-26051527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               943
               

               Alignm identity:
               595
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 18
               

               Conread position:
               62-883
               

               Cow position:
               chr11:58138778-58139642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               878
               

               Alignm identity:
               549
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               25, 96
               

               Conread position:
               135-411
               

               Cow position:
               chr11:41234819-41235107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               22, 245
               

               Conread position:
               135-475
               

               Cow position:
               chr11:30105048-30104686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               22, 245
               

               Conread position:
               149-532
               

               Cow position:
               chr11:63902065-63901686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               58, 8
               

               Conread position:
               151-920
               

               Cow position:
               chr11:43511808-43511002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               816
               

               Alignm identity:
               501
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               64, 10
               

               Conread position:
               160-878
               

               Cow position:
               chr11:58135890-58136648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               767
               

               Alignm identity:
               478
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               48, 217
               

               Conread position:
               160-893
               

               Cow position:
               chr11:61398438-61397676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               781
               

               Alignm identity:
               495
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               48, 83
               

               Conread position:
               168-464
               

               Cow position:
               chr11:39807105-39807421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 210
               

               Conread position:
               175-757
               

               Cow position:
               chr11:23124741-23124154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               365
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               55, 120
               

               Conread position:
               176-881
               

               Cow position:
               chr11:41101101-41101851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               756
               

               Alignm identity:
               462
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               29, 345
               

               Conread position:
               179-879
               

               Cow position:
               chr11:2533789-2534531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               749
               

               Alignm identity:
               469
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               29, 199
               

               Conread position:
               180-945
               

               Cow position:
               chr11:45652715-45651914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               807
               

               Alignm identity:
               484
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               36, 404
               

               Conread position:
               195-881
               

               Cow position:
               chr11:29663841-29663116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               462
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               37, 290
               

               Conread position:
               209-401
               

               Cow position:
               chr11:45853733-45853534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               25, 150
               

               Conread position:
               226-926
               

               Cow position:
               chr11:97338-96615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               461
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               12, 33
               

               Conread position:
               230-945
               

               Cow position:
               chr11:45549400-45550124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               751
               

               Alignm identity:
               461
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               15, 54
               

               Conread position:
               269-842
               

               Cow position:
               chr11:20573927-20573340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               371
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               36, 93
               

               Conread position:
               269-945
               

               Cow position:
               chr11:43833873-43833197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               448
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               72, 7
               

               Conread position:
               311-828
               

               Cow position:
               chr11:34456333-34456858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               345
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               64, 53
               

               Conread position:
               327-869
               

               Cow position:
               chr11:54866173-54865619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               361
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               44, 164
               

               Conread position:
               400-943
               

               Cow position:
               chr11:44528521-44529061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               358
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               21, 25
               

               Conread position:
               424-752
               

               Cow position:
               chr11:1265909-1265564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               25, 105
               

               Conread position:
               567-843
               

               Cow position:
               chr11:18693234-18693519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               18, 176
               

               Conread position:
               587-866
               

               Cow position:
               chr11:15468762-15469054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               35, 25
               

               Conread position:
               595-946
               

               Cow position:
               chr11:10809617-10809259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               27, 144
               

               Conread position:
               621-930
               

               Cow position:
               chr11:19794855-19795159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               196, 37
               

               Conread position:
               621-930
               

               Cow position:
               chr11:42365968-42366284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               112, 64
               

               Conread position:
               621-941
               

               Cow position:
               chr11:26655284-26655607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               181, 25
               

               Conread position:
               621-942
               

               Cow position:
               chr11:49485538-49485865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               96, 102
               

               Conread position:
               627-926
               

               Cow position:
               chr11:15942635-15942334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               190, 78
               

               Conread position:
               628-942
               

               Cow position:
               chr11:33863426-33863106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               162, 203
               

               Conread position:
               640-942
               

               Cow position:
               chr11:39528076-39528372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               102, 164
               

               Conread position:
               643-946
               

               Cow position:
               chr11:1285431-1285123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               36, 31
               

               Conread position:
               667-946
               

               Cow position:
               chr11:950474-950759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               113, 201
               

               Conread position:
               667-946
               

               Cow position:
               chr11:10990823-10991106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               183
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               149, 212
               

               Conread position:
               669-941
               

               Cow position:
               chr11:53100634-53100917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               18, 218
               

               Conread position:
               690-923
               

               Cow position:
               chr11:52687889-52687664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               62, 40
               

               Conread position:
               690-943
               

               Cow position:
               chr11:84213986-84213731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               127, 16
               

               Conread position:
               702-942
               

               Cow position:
               chr11:45853215-45852971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               86, 26
               

               Conread position:
               1-411
               

               Cow position:
               chr12:21252287-21251863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               278
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               85, 62
               

               Conread position:
               2-464
               

               Cow position:
               chr12:18467087-18467566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               314
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               85, 50
               

               Conread position:
               5-920
               

               Cow position:
               chr12:12755862-12754900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               973
               

               Alignm identity:
               605
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 66
               

               Conread position:
               8-295
               

               Cow position:
               chr12:24979985-24980281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               107, 68
               

               Conread position:
               8-360
               

               Cow position:
               chr12:8675774-8675407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-381
               

               Cow position:
               chr12:1407133-1407516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               243
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               74, 160
               

               Conread position:
               8-411
               

               Cow position:
               chr12:21210972-21211391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               272
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               78, 68
               

               Conread position:
               8-411
               

               Cow position:
               chr12:22571149-22571559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-411
               

               Cow position:
               chr12:33926222-33925803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               285
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-447
               

               Cow position:
               chr12:21430260-21430724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-448
               

               Cow position:
               chr12:20460921-20460474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               78, 59
               

               Conread position:
               8-475
               

               Cow position:
               chr12:36212554-36213046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               325
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-612
               

               Cow position:
               chr12:24993670-24993050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               409
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-838
               

               Cow position:
               chr12:3363242-3364113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               879
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-882
               

               Cow position:
               chr12:11100548-11101466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               927
               

               Alignm identity:
               560
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-893
               

               Cow position:
               chr12:17717598-17718529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               948
               

               Alignm identity:
               610
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr12:22747516-22748444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               940
               

               Alignm identity:
               590
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 51
               

               Conread position:
               8-893
               

               Cow position:
               chr12:25267036-25266105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               952
               

               Alignm identity:
               617
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-893
               

               Cow position:
               chr12:35548831-35547900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               941
               

               Alignm identity:
               588
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr12:38892659-38893592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               942
               

               Alignm identity:
               590
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-893
               

               Cow position:
               chr12:42605875-42604954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               947
               

               Alignm identity:
               595
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               79, 24
               

               Conread position:
               8-921
               

               Cow position:
               chr12:34175654-34176622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               980
               

               Alignm identity:
               622
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-925
               

               Cow position:
               chr12:37561309-37562267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               971
               

               Alignm identity:
               597
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               14-892
               

               Cow position:
               chr12:32655862-32656778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               939
               

               Alignm identity:
               592
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               108, 54
               

               Conread position:
               15-410
               

               Cow position:
               chr12:21944427-21944834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               259
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               57, 21
               

               Conread position:
               15-882
               

               Cow position:
               chr12:1887037-1886140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               913
               

               Alignm identity:
               562
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               142, 61
               

               Conread position:
               15-946
               

               Cow position:
               chr12:30140743-30141701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               983
               

               Alignm identity:
               594
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               120, 53
               

               Conread position:
               16-411
               

               Cow position:
               chr12:1404577-1404988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               71, 368
               

               Conread position:
               18-457
               

               Cow position:
               chr12:43898303-43897859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               295
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               63, 50
               

               Conread position:
               19-829
               

               Cow position:
               chr12:8890733-8889895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               856
               

               Alignm identity:
               546
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 51
               

               Conread position:
               31-400
               

               Cow position:
               chr12:26922234-26922610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               104, 45
               

               Conread position:
               77-429
               

               Cow position:
               chr12:6078738-6078377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               10, 151
               

               Conread position:
               88-475
               

               Cow position:
               chr12:34964920-34964508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               268
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               36, 295
               

               Conread position:
               135-881
               

               Cow position:
               chr12:25097834-25097048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               795
               

               Alignm identity:
               486
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               16, 29
               

               Conread position:
               144-409
               

               Cow position:
               chr12:2805691-2805420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               59, 17
               

               Conread position:
               158-411
               

               Cow position:
               chr12:536829-537092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               50, 220
               

               Conread position:
               164-744
               

               Cow position:
               chr12:36406209-36405592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               379
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               44, 214
               

               Conread position:
               175-384
               

               Cow position:
               chr12:26142395-26142185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               30, 51
               

               Conread position:
               206-893
               

               Cow position:
               chr12:45144559-45145281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               450
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               27, 170
               

               Conread position:
               230-731
               

               Cow position:
               chr12:2807769-2808255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               334
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               75, 42
               

               Conread position:
               297-897
               

               Cow position:
               chr12:25144102-25143486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               395
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               85, 18
               

               Conread position:
               311-893
               

               Cow position:
               chr12:25939643-25939056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               383
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               26, 49
               

               Conread position:
               441-772
               

               Cow position:
               chr12:31293095-31292735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               27, 77
               

               Conread position:
               1-360
               

               Cow position:
               chr13:34374461-34374098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               83, 67
               

               Conread position:
               1-374
               

               Cow position:
               chr13:2886374-2886004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               136, 63
               

               Conread position:
               1-385
               

               Cow position:
               chr13:20993079-20992698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               82, 32
               

               Conread position:
               1-766
               

               Cow position:
               chr13:3533898-3533112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               806
               

               Alignm identity:
               490
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               83, 67
               

               Conread position:
               1-773
               

               Cow position:
               chr13:48548240-48549045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               824
               

               Alignm identity:
               532
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 55
               

               Conread position:
               2-359
               

               Cow position:
               chr13:47368252-47368623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               84, 23
               

               Conread position:
               8-356
               

               Cow position:
               chr13:49613444-49613090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-359
               

               Cow position:
               chr13:3692858-3692494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               243
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-410
               

               Cow position:
               chr13:15559424-15559842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               277
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-410
               

               Cow position:
               chr13:49061444-49061865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               287
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               76, 43
               

               Conread position:
               8-411
               

               Cow position:
               chr13:13327032-13327446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               277
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-475
               

               Cow position:
               chr13:11737845-11738338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-475
               

               Cow position:
               chr13:17310508-17310999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               318
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-545
               

               Cow position:
               chr13:1047955-1047412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 72
               

               Conread position:
               8-732
               

               Cow position:
               chr13:5499889-5499162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               755
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 24
               

               Conread position:
               8-782
               

               Cow position:
               chr13:15279701-15278907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               806
               

               Alignm identity:
               490
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               78, 68
               

               Conread position:
               8-783
               

               Cow position:
               chr13:35539254-35540078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               826
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-868
               

               Cow position:
               chr13:4855193-4856080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               902
               

               Alignm identity:
               544
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               78, 62
               

               Conread position:
               8-881
               

               Cow position:
               chr13:32983309-32982392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               931
               

               Alignm identity:
               580
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-881
               

               Cow position:
               chr13:35759648-35760551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               919
               

               Alignm identity:
               570
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-881
               

               Cow position:
               chr13:49975767-49976679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               922
               

               Alignm identity:
               569
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-883
               

               Cow position:
               chr13:30036190-30035310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               916
               

               Alignm identity:
               561
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               40, 53
               

               Conread position:
               8-891
               

               Cow position:
               chr13:32548849-32549777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               940
               

               Alignm identity:
               582
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               80, 62
               

               Conread position:
               8-893
               

               Cow position:
               chr13:562298-561366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               943
               

               Alignm identity:
               581
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-893
               

               Cow position:
               chr13:19565806-19566741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               945
               

               Alignm identity:
               588
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-896
               

               Cow position:
               chr13:3555500-3556435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               947
               

               Alignm identity:
               599
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-921
               

               Cow position:
               chr13:13901956-13902905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               963
               

               Alignm identity:
               590
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 58
               

               Conread position:
               8-921
               

               Cow position:
               chr13:30305286-30306235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               964
               

               Alignm identity:
               591
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-921
               

               Cow position:
               chr13:32735095-32734138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               970
               

               Alignm identity:
               595
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               74, 34
               

               Conread position:
               11-272
               

               Cow position:
               chr13:4735370-4735641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               21, 25
               

               Conread position:
               11-356
               

               Cow position:
               chr13:4733626-4733983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               21, 25
               

               Conread position:
               14-455
               

               Cow position:
               chr13:12732887-12732423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               303
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               70, 54
               

               Conread position:
               14-827
               

               Cow position:
               chr13:24932697-24931839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               861
               

               Alignm identity:
               502
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               73, 49
               

               Conread position:
               15-942
               

               Cow position:
               chr13:11350502-11351459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               974
               

               Alignm identity:
               598
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               69, 55
               

               Conread position:
               16-400
               

               Cow position:
               chr13:33930285-33929905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               228, 54
               

               Conread position:
               16-475
               

               Cow position:
               chr13:17480645-17480168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               319
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               67, 19
               

               Conread position:
               18-544
               

               Cow position:
               chr13:27470065-27470601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               350
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               91, 45
               

               Conread position:
               23-376
               

               Cow position:
               chr13:9376969-9376609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               62, 47
               

               Conread position:
               23-562
               

               Cow position:
               chr13:38076187-38075649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               352
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               61, 45
               

               Conread position:
               25-358
               

               Cow position:
               chr13:2872957-2872618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               59, 43
               

               Conread position:
               25-464
               

               Cow position:
               chr13:19449426-19449862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               60, 38
               

               Conread position:
               25-533
               

               Cow position:
               chr13:394009-393504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               354
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               45, 55
               

               Conread position:
               35-411
               

               Cow position:
               chr13:51466080-51465691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               260
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               89, 41
               

               Conread position:
               35-893
               

               Cow position:
               chr13:32079980-32080896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               924
               

               Alignm identity:
               578
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 35
               

               Conread position:
               42-475
               

               Cow position:
               chr13:19230585-19230131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               294
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               82, 34
               

               Conread position:
               44-941
               

               Cow position:
               chr13:47569225-47570146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               949
               

               Alignm identity:
               612
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 23
               

               Conread position:
               56-460
               

               Cow position:
               chr13:1883347-1882937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               30, 11
               

               Conread position:
               56-893
               

               Cow position:
               chr13:18122734-18121850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               889
               

               Alignm identity:
               541
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               62-410
               

               Cow position:
               chr13:2581939-2581588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               23, 94
               

               Conread position:
               88-788
               

               Cow position:
               chr13:36671825-36672565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               754
               

               Alignm identity:
               476
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               36, 406
               

               Conread position:
               117-506
               

               Cow position:
               chr13:12901665-12901273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               196, 30
               

               Conread position:
               126-881
               

               Cow position:
               chr13:36935943-36936740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               807
               

               Alignm identity:
               500
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               31, 194
               

               Conread position:
               132-475
               

               Cow position:
               chr13:43891454-43891815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               76, 21
               

               Conread position:
               135-475
               

               Cow position:
               chr13:51006804-51006442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               22, 245
               

               Conread position:
               135-893
               

               Cow position:
               chr13:6360090-6360886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               807
               

               Alignm identity:
               506
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               73, 18
               

               Conread position:
               150-562
               

               Cow position:
               chr13:25929181-25929594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 107
               

               Conread position:
               159-881
               

               Cow position:
               chr13:9300417-9301179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               772
               

               Alignm identity:
               474
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               46, 140
               

               Conread position:
               159-941
               

               Cow position:
               chr13:46461915-46462701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               829
               

               Alignm identity:
               535
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               49, 93
               

               Conread position:
               175-881
               

               Cow position:
               chr13:16806858-16807606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               754
               

               Alignm identity:
               470
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               33, 354
               

               Conread position:
               179-464
               

               Cow position:
               chr13:47024062-47024367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               29, 199
               

               Conread position:
               181-893
               

               Cow position:
               chr13:13333687-13332934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               760
               

               Alignm identity:
               464
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               27, 346
               

               Conread position:
               191-843
               

               Cow position:
               chr13:21854624-21855306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               443
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               17, 134
               

               Conread position:
               223-384
               

               Cow position:
               chr13:12272300-12272460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               21, 43
               

               Conread position:
               230-583
               

               Cow position:
               chr13:14856983-14856635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               80, 21
               

               Conread position:
               255-942
               

               Cow position:
               chr13:6078674-6077977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               456
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               62, 50
               

               Conread position:
               311-893
               

               Cow position:
               chr13:21837894-21837277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               387
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               75, 219
               

               Conread position:
               327-946
               

               Cow position:
               chr13:487961-488597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               402
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               60, 125
               

               Conread position:
               400-945
               

               Cow position:
               chr13:21587052-21587620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               365
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               49, 67
               

               Conread position:
               487-843
               

               Cow position:
               chr13:22020166-22019792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               75, 33
               

               Conread position:
               489-871
               

               Cow position:
               chr13:54243703-54243322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               16, 29
               

               Conread position:
               592-926
               

               Cow position:
               chr13:20906800-20907145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               29, 193
               

               Conread position:
               595-921
               

               Cow position:
               chr13:43975234-43974902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               27, 282
               

               Conread position:
               597-871
               

               Cow position:
               chr13:20992398-20992120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               194, 24
               

               Conread position:
               618-805
               

               Cow position:
               chr13:57217241-57217425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               11, 43
               

               Conread position:
               618-947
               

               Cow position:
               chr13:41362353-41362682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               209
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               142, 20
               

               Conread position:
               619-776
               

               Cow position:
               chr13:58843456-58843613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               74, 67
               

               Conread position:
               623-868
               

               Cow position:
               chr13:14183206-14182956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               70, 63
               

               Conread position:
               701-945
               

               Cow position:
               chr13:55594475-55594227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               77, 101
               

               Conread position:
               2-881
               

               Cow position:
               chr14:46123085-46123988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               923
               

               Alignm identity:
               558
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               84, 66
               

               Conread position:
               4-828
               

               Cow position:
               chr14:46375275-46376130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               868
               

               Alignm identity:
               522
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               68, 98
               

               Conread position:
               8-294
               

               Cow position:
               chr14:192016-192312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-294
               

               Cow position:
               chr14:15273589-15273292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               74, 62
               

               Conread position:
               8-320
               

               Cow position:
               chr14:31684721-31684396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-395
               

               Cow position:
               chr14:30713820-30713417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               265
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-400
               

               Cow position:
               chr14:11835594-11836003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               76, 60
               

               Conread position:
               8-410
               

               Cow position:
               chr14:11475326-11474918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-410
               

               Cow position:
               chr14:30130452-30130860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               258
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               76, 60
               

               Conread position:
               8-464
               

               Cow position:
               chr14:46222044-46222526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               320
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-574
               

               Cow position:
               chr14:9894798-9895378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               368
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               125, 60
               

               Conread position:
               8-774
               

               Cow position:
               chr14:37256124-37256920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               812
               

               Alignm identity:
               503
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-830
               

               Cow position:
               chr14:5531301-5532160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               874
               

               Alignm identity:
               550
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 59
               

               Conread position:
               8-842
               

               Cow position:
               chr14:1660419-1661284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               879
               

               Alignm identity:
               551
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 24
               

               Conread position:
               8-842
               

               Cow position:
               chr14:22104594-22103719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               887
               

               Alignm identity:
               561
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-881
               

               Cow position:
               chr14:17489364-17488460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               923
               

               Alignm identity:
               585
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-881
               

               Cow position:
               chr14:32585062-32584146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               927
               

               Alignm identity:
               565
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               116, 80
               

               Conread position:
               8-893
               

               Cow position:
               chr14:9450568-9449642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               939
               

               Alignm identity:
               582
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr14:19549161-19550085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               942
               

               Alignm identity:
               595
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr14:23255378-23254448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               950
               

               Alignm identity:
               607
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-893
               

               Cow position:
               chr14:29045713-29044783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               948
               

               Alignm identity:
               597
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 81
               

               Conread position:
               8-921
               

               Cow position:
               chr14:13861557-13860622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               958
               

               Alignm identity:
               589
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-921
               

               Cow position:
               chr14:16917765-16916808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               969
               

               Alignm identity:
               597
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 155
               

               Conread position:
               8-921
               

               Cow position:
               chr14:19326296-19325340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               966
               

               Alignm identity:
               591
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               82, 62
               

               Conread position:
               8-933
               

               Cow position:
               chr14:11151943-11150984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               975
               

               Alignm identity:
               592
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               11-921
               

               Cow position:
               chr14:2288225-2289172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               958
               

               Alignm identity:
               593
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 25
               

               Conread position:
               14-457
               

               Cow position:
               chr14:38460486-38460017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               312
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               73, 56
               

               Conread position:
               15-391
               

               Cow position:
               chr14:20705462-20705851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               109, 53
               

               Conread position:
               15-411
               

               Cow position:
               chr14:45026985-45026575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               109, 55
               

               Conread position:
               16-405
               

               Cow position:
               chr14:49647470-49647069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               68, 52
               

               Conread position:
               19-410
               

               Cow position:
               chr14:44889259-44888854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               71, 49
               

               Conread position:
               23-400
               

               Cow position:
               chr14:43560212-43560603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               255
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               101, 19
               

               Conread position:
               23-410
               

               Cow position:
               chr14:27989501-27989106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               63, 13
               

               Conread position:
               27-757
               

               Cow position:
               chr14:7843785-7844534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               769
               

               Alignm identity:
               473
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               112, 43
               

               Conread position:
               35-474
               

               Cow position:
               chr14:50113356-50113822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               303
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               52, 35
               

               Conread position:
               62-893
               

               Cow position:
               chr14:749587-748707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               889
               

               Alignm identity:
               547
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               12, 264
               

               Conread position:
               135-459
               

               Cow position:
               chr14:39299844-39300183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               86, 18
               

               Conread position:
               149-541
               

               Cow position:
               chr14:46036667-46036265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 12
               

               Conread position:
               151-881
               

               Cow position:
               chr14:17689236-17690007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               778
               

               Alignm identity:
               478
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               54, 10
               

               Conread position:
               175-400
               

               Cow position:
               chr14:26868175-26867938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               175-893
               

               Cow position:
               chr14:9046969-9047728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               776
               

               Alignm identity:
               494
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               33, 313
               

               Conread position:
               176-400
               

               Cow position:
               chr14:11636696-11636927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               15, 88
               

               Conread position:
               219-945
               

               Cow position:
               chr14:23258240-23258964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               749
               

               Alignm identity:
               460
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               84, 22
               

               Conread position:
               229-869
               

               Cow position:
               chr14:21047469-21046800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               443
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               18, 79
               

               Conread position:
               259-945
               

               Cow position:
               chr14:40501093-40501784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               435
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               42, 22
               

               Conread position:
               311-945
               

               Cow position:
               chr14:39321123-39321781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               674
               

               Alignm identity:
               435
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               69, 16
               

               Conread position:
               313-889
               

               Cow position:
               chr14:30477057-30476455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               386
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               69, 149
               

               Conread position:
               400-946
               

               Cow position:
               chr14:21096530-21097090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               370
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               52, 20
               

               Conread position:
               528-930
               

               Cow position:
               chr14:44077179-44076757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               53, 303
               

               Conread position:
               587-894
               

               Cow position:
               chr14:5641723-5642031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               106, 28
               

               Conread position:
               591-946
               

               Cow position:
               chr14:1735941-1735578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               26, 14
               

               Conread position:
               621-927
               

               Cow position:
               chr14:41477554-41477858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               181, 55
               

               Conread position:
               622-921
               

               Cow position:
               chr14:12740434-12740130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               195, 254
               

               Conread position:
               623-946
               

               Cow position:
               chr14:39936374-39936689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               190, 107
               

               Conread position:
               626-946
               

               Cow position:
               chr14:25259609-25259935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               171, 210
               

               Conread position:
               645-926
               

               Cow position:
               chr14:17732795-17732503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               123, 150
               

               Conread position:
               691-945
               

               Cow position:
               chr14:47918851-47918599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               117, 44
               

               Conread position:
               1-397
               

               Cow position:
               chr15:43293210-43292807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               86, 53
               

               Conread position:
               1-410
               

               Cow position:
               chr15:8101411-8101838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               273
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               2-398
               

               Cow position:
               chr15:9431892-9432293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               122, 66
               

               Conread position:
               2-857
               

               Cow position:
               chr15:2410739-2409864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               893
               

               Alignm identity:
               539
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               84, 66
               

               Conread position:
               2-893
               

               Cow position:
               chr15:480540-481478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               952
               

               Alignm identity:
               593
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 74
               

               Conread position:
               7-881
               

               Cow position:
               chr15:7546846-7547750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               917
               

               Alignm identity:
               546
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               117, 69
               

               Conread position:
               7-883
               

               Cow position:
               chr15:13429785-13430707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               932
               

               Alignm identity:
               587
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 29
               

               Conread position:
               8-262
               

               Cow position:
               chr15:16189806-16189541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-288
               

               Cow position:
               chr15:43739295-43739005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-297
               

               Cow position:
               chr15:6551799-6551499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               76, 60
               

               Conread position:
               8-406
               

               Cow position:
               chr15:20354515-20354102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               260
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               78, 55
               

               Conread position:
               8-408
               

               Cow position:
               chr15:12023463-12023875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               76, 57
               

               Conread position:
               8-410
               

               Cow position:
               chr15:14580183-14579765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               268
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-410
               

               Cow position:
               chr15:24297157-24297574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               79, 59
               

               Conread position:
               8-410
               

               Cow position:
               chr15:27747973-27748390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               273
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               74, 149
               

               Conread position:
               8-411
               

               Cow position:
               chr15:20405772-20405355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               272
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-447
               

               Cow position:
               chr15:33123345-33123809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               309
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-475
               

               Cow position:
               chr15:7848313-7848806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               330
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-475
               

               Cow position:
               chr15:10825436-10825928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               321
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               102, 34
               

               Conread position:
               8-475
               

               Cow position:
               chr15:25205043-25204550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               326
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-475
               

               Cow position:
               chr15:27635391-27635884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               330
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-562
               

               Cow position:
               chr15:6563141-6563709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-707
               

               Cow position:
               chr15:6153966-6153227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               747
               

               Alignm identity:
               459
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-880
               

               Cow position:
               chr15:21663778-21662860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               926
               

               Alignm identity:
               569
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-881
               

               Cow position:
               chr15:15345141-15344220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               940
               

               Alignm identity:
               594
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-881
               

               Cow position:
               chr15:20412562-20413458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               915
               

               Alignm identity:
               541
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-881
               

               Cow position:
               chr15:25131918-25132840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               930
               

               Alignm identity:
               565
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               8-893
               

               Cow position:
               chr15:7564967-7565897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               947
               

               Alignm identity:
               598
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr15:18229028-18229959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               950
               

               Alignm identity:
               611
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr15:18265796-18264868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               948
               

               Alignm identity:
               597
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-893
               

               Cow position:
               chr15:31586433-31585504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               942
               

               Alignm identity:
               584
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-893
               

               Cow position:
               chr15:36330494-36329566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               932
               

               Alignm identity:
               577
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 830
               

               Conread position:
               8-893
               

               Cow position:
               chr15:42944643-42943712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               940
               

               Alignm identity:
               592
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-930
               

               Cow position:
               chr15:41786718-41785781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               967
               

               Alignm identity:
               603
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 63
               

               Conread position:
               11-410
               

               Cow position:
               chr15:32844808-32844406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               76, 33
               

               Conread position:
               11-411
               

               Cow position:
               chr15:52976922-52977338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               281
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               21, 25
               

               Conread position:
               11-475
               

               Cow position:
               chr15:5939695-5939213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               318
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               113, 57
               

               Conread position:
               15-329
               

               Cow position:
               chr15:9394936-9395259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               69, 53
               

               Conread position:
               15-341
               

               Cow position:
               chr15:7840273-7840612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               218
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               67, 290
               

               Conread position:
               15-400
               

               Cow position:
               chr15:7270316-7270711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               121, 35
               

               Conread position:
               15-410
               

               Cow position:
               chr15:42531891-42532301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               265
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               72, 55
               

               Conread position:
               15-415
               

               Cow position:
               chr15:30727273-30726863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               124, 48
               

               Conread position:
               15-883
               

               Cow position:
               chr15:3153579-3152680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               928
               

               Alignm identity:
               575
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               133, 55
               

               Conread position:
               20-474
               

               Cow position:
               chr15:7448815-7448350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               17, 58
               

               Conread position:
               23-841
               

               Cow position:
               chr15:51219720-51220583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               870
               

               Alignm identity:
               539
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 19
               

               Conread position:
               23-933
               

               Cow position:
               chr15:44072446-44073383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               961
               

               Alignm identity:
               596
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               64, 47
               

               Conread position:
               25-927
               

               Cow position:
               chr15:443804-442858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               963
               

               Alignm identity:
               589
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               111, 45
               

               Conread position:
               30-445
               

               Cow position:
               chr15:7552609-7553038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               282
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               57, 29
               

               Conread position:
               35-411
               

               Cow position:
               chr15:3891556-3891948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               47, 122
               

               Conread position:
               35-881
               

               Cow position:
               chr15:35751304-35750413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               902
               

               Alignm identity:
               549
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               89, 42
               

               Conread position:
               36-881
               

               Cow position:
               chr15:36941394-36940499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               901
               

               Alignm identity:
               554
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               46, 34
               

               Conread position:
               47-384
               

               Cow position:
               chr15:3837460-3837110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               40, 23
               

               Conread position:
               52-893
               

               Cow position:
               chr15:31270864-31269977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               899
               

               Alignm identity:
               556
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               35, 18
               

               Conread position:
               100-397
               

               Cow position:
               chr15:11847635-11847931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               147, 61
               

               Conread position:
               135-407
               

               Cow position:
               chr15:280423-280149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               58, 26
               

               Conread position:
               135-410
               

               Cow position:
               chr15:40820284-40820004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               73, 20
               

               Conread position:
               135-582
               

               Cow position:
               chr15:25331524-25331979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               304
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               22, 110
               

               Conread position:
               135-893
               

               Cow position:
               chr15:25070399-25069600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               806
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 394
               

               Conread position:
               151-929
               

               Cow position:
               chr15:4924277-4925089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               819
               

               Alignm identity:
               498
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               57, 10
               

               Conread position:
               158-410
               

               Cow position:
               chr15:15650263-15650004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               15, 63
               

               Conread position:
               160-766
               

               Cow position:
               chr15:23709392-23708749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               654
               

               Alignm identity:
               415
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               48, 328
               

               Conread position:
               175-475
               

               Cow position:
               chr15:16514203-16514517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               175-900
               

               Cow position:
               chr15:49449005-49448254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               770
               

               Alignm identity:
               487
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               28, 141
               

               Conread position:
               181-893
               

               Cow position:
               chr15:21636415-21637167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               759
               

               Alignm identity:
               479
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               27, 347
               

               Conread position:
               205-942
               

               Cow position:
               chr15:40330307-40329541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               783
               

               Alignm identity:
               489
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               35, 91
               

               Conread position:
               210-946
               

               Cow position:
               chr15:20330216-20329470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               774
               

               Alignm identity:
               478
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               21, 103
               

               Conread position:
               258-904
               

               Cow position:
               chr15:13980535-13981221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               428
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               13, 223
               

               Conread position:
               278-893
               

               Cow position:
               chr15:5641341-5640697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               654
               

               Alignm identity:
               410
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               24, 252
               

               Conread position:
               283-922
               

               Cow position:
               chr15:27727227-27726568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               679
               

               Alignm identity:
               423
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               79, 57
               

               Conread position:
               289-545
               

               Cow position:
               chr15:13612440-13612181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               16, 202
               

               Conread position:
               439-942
               

               Cow position:
               chr15:27760130-27759604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               339
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               10, 48
               

               Conread position:
               456-941
               

               Cow position:
               chr15:30611628-30612135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               342
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               110, 33
               

               Conread position:
               496-787
               

               Cow position:
               chr15:9530292-9530010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               108, 24
               

               Conread position:
               605-871
               

               Cow position:
               chr15:21563861-21564128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               14, 196
               

               Conread position:
               621-946
               

               Cow position:
               chr15:12721034-12721356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               108, 79
               

               Conread position:
               638-946
               

               Cow position:
               chr15:46105862-46106174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               137, 145
               

               Conread position:
               643-894
               

               Cow position:
               chr15:17862274-17862523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               86, 60
               

               Conread position:
               646-871
               

               Cow position:
               chr15:40729902-40729669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               131, 80
               

               Conread position:
               666-866
               

               Cow position:
               chr15:14718486-14718689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               60, 69
               

               Conread position:
               666-943
               

               Cow position:
               chr15:14606646-14606363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               675-946
               

               Cow position:
               chr15:20155511-20155233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               12, 35
               

               Conread position:
               676-894
               

               Cow position:
               chr15:14618700-14618921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               70, 57
               

               Conread position:
               694-947
               

               Cow position:
               chr15:12770252-12770510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               93, 136
               

               Conread position:
               1-464
               

               Cow position:
               chr16:14620649-14620178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               321
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               116, 67
               

               Conread position:
               1-543
               

               Cow position:
               chr16:36164380-36164930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               369
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               130, 75
               

               Conread position:
               1-783
               

               Cow position:
               chr16:43693463-43694242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               806
               

               Alignm identity:
               485
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               80, 99
               

               Conread position:
               2-410
               

               Cow position:
               chr16:25934768-25935186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               260
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               73, 81
               

               Conread position:
               2-410
               

               Cow position:
               chr16:52590095-52589680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               274
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               85, 44
               

               Conread position:
               2-790
               

               Cow position:
               chr16:22852614-22853419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               824
               

               Alignm identity:
               512
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               81, 5
               

               Conread position:
               2-858
               

               Cow position:
               chr16:42804371-42805232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               885
               

               Alignm identity:
               523
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               82, 61
               

               Conread position:
               2-893
               

               Cow position:
               chr16:20277462-20278386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               936
               

               Alignm identity:
               555
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 34
               

               Conread position:
               5-464
               

               Cow position:
               chr16:1566057-1565580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               306
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               7, 64
               

               Conread position:
               5-726
               

               Cow position:
               chr16:52626984-52627730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               760
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 71
               

               Conread position:
               8-272
               

               Cow position:
               chr16:23319308-23319039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               116, 62
               

               Conread position:
               8-321
               

               Cow position:
               chr16:32836537-32836854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               73, 60
               

               Conread position:
               8-332
               

               Cow position:
               chr16:49743812-49743479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               98, 68
               

               Conread position:
               8-359
               

               Cow position:
               chr16:47787573-47787937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               245
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-375
               

               Cow position:
               chr16:53446156-53445776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-396
               

               Cow position:
               chr16:26652234-26652638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               273
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-411
               

               Cow position:
               chr16:26991333-26990914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               85, 68
               

               Conread position:
               8-429
               

               Cow position:
               chr16:48103712-48104143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               80, 48
               

               Conread position:
               8-457
               

               Cow position:
               chr16:11284839-11285303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               310
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               8-464
               

               Cow position:
               chr16:3144774-3144302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               306
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               79, 60
               

               Conread position:
               8-475
               

               Cow position:
               chr16:41161849-41161362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               320
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               8-828
               

               Cow position:
               chr16:34505315-34506176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               872
               

               Alignm identity:
               538
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               116, 68
               

               Conread position:
               8-881
               

               Cow position:
               chr16:3149406-3148501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               921
               

               Alignm identity:
               568
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               79, 60
               

               Conread position:
               8-881
               

               Cow position:
               chr16:20642124-20643023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               922
               

               Alignm identity:
               565
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               24, 28
               
8-881UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr16:43895645-43894727 (view  custom track)
               

               Alignm length:
               936
               

               Alignm identity:
               589
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 62
               
8-883UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr16:51086401-51087321 (view  custom track)

               
               
               
Alignm length: 932

               
               
               
Alignm identity: 560

               
               
               
Alignm E-value: 3e-28

               
               
               
Alignm gaps (pig, cow): 64, 37
8-893UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr16:3010457-3011384 (view  custom track)

               
               
               
Alignm length: 939

               
               
               
Alignm identity: 588

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 116, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr16:12536331-12535401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:948
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr16:23876909-23875994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr16:28168703-28167772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr16:28194685-28193754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr16:31587081-31586154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr16:47403001-47403928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-921
               
               
               Cow position:chr16:5526487-5525524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:973
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 60

               
               
               Conread position:8-921
               
               
               Cow position:chr16:10439866-10440814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:964
               
               
               Alignm identity:592
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):72, 93

               
               
               Conread position:8-925
               
               
               Cow position:chr16:8814489-8813524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:981
               
               
               Alignm identity:617
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-933
               
               
               Cow position:chr16:3770394-3769423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:984
               
               
               Alignm identity:604
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):79, 56

               
               
               Conread position:11-394
               
               
               Cow position:chr16:21188852-21189251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chr16:22800052-22799158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:15-339
               
               
               Cow position:chr16:30999856-31000187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 48

               
               
               Conread position:15-397
               
               
               Cow position:chr16:23097569-23097181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:15-410
               
               
               Cow position:chr16:20408541-20408151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:15-788
               
               
               Cow position:chr16:5487391-5488207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:512
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:15-933
               
               
               Cow position:chr16:15186694-15187652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:977
               
               
               Alignm identity:600
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:16-464
               
               
               Cow position:chr16:47475641-47476111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:298
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:20-354
               
               
               Cow position:chr16:42131074-42131420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):97, 50

               
               
               Conread position:23-407
               
               
               Cow position:chr16:4388366-4388767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:23-842
               
               
               Cow position:chr16:24622068-24621211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:871
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:24-434
               
               
               Cow position:chr16:30073022-30073442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:24-924
               
               
               Cow position:chr16:37443886-37442956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:945
               
               
               Alignm identity:566
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:32-407
               
               
               Cow position:chr16:37057400-37057013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:32-574
               
               
               Cow position:chr16:13559320-13558767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:362
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):115, 23

               
               
               Conread position:39-348
               
               
               Cow position:chr16:16508398-16508087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 122

               
               
               Conread position:46-562
               
               
               Cow position:chr16:53760140-53760644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:351
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:68-473
               
               
               Cow position:chr16:16268219-16267788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:282
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 8

               
               
               Conread position:73-378
               
               
               Cow position:chr16:18752657-18752368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):157, 77

               
               
               Conread position:92-400
               
               
               Cow position:chr16:5528889-5529212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):33, 291

               
               
               Conread position:135-646
               
               
               Cow position:chr16:26092148-26091628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 245

               
               
               Conread position:138-375
               
               
               Cow position:chr16:23169905-23169670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:151-561
               
               
               Cow position:chr16:20969034-20968618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:175-455
               
               
               Cow position:chr16:2095419-2095124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:175-475
               
               
               Cow position:chr16:56861097-56861417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 203

               
               
               Conread position:175-842
               
               
               Cow position:chr16:11744328-11745035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:439
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 203

               
               
               Conread position:179-844
               
               
               Cow position:chr16:19066311-19066958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:436
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 104

               
               
               Conread position:236-942
               
               
               Cow position:chr16:9610839-9610131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:433
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):33, 180

               
               
               Conread position:250-926
               
               
               Cow position:chr16:34247981-34247308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:434
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:255-870
               
               
               Cow position:chr16:15046764-15046153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:384
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:260-912
               
               
               Cow position:chr16:18092657-18092011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:432
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):9, 61

               
               
               Conread position:293-567
               
               
               Cow position:chr16:36652322-36652595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 149

               
               
               Conread position:311-893
               
               
               Cow position:chr16:15311213-15311827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:396
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 60

               
               
               Conread position:311-893
               
               
               Cow position:chr16:18974796-18975414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:389
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 517

               
               
               Conread position:595-946
               
               
               Cow position:chr16:30696316-30695956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 141

               
               
               Conread position:599-867
               
               
               Cow position:chr16:43647028-43647296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 88

               
               
               Conread position:614-826
               
               
               Cow position:chr16:21813394-21813606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:618-914
               
               
               Cow position:chr16:42335048-42334747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:618-945
               
               
               Cow position:chr16:20720976-20721310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):172, 239

               
               
               Conread position:618-946
               
               
               Cow position:chr16:19159078-19158755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):199, 47

               
               
               Conread position:621-884
               
               
               Cow position:chr16:15549122-15549389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:621-926
               
               
               Cow position:chr16:31504199-31504503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:622-920
               
               
               Cow position:chr16:43563124-43562821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):195, 254

               
               
               Conread position:623-926
               
               
               Cow position:chr16:35273129-35273436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:626-926
               
               
               Cow position:chr16:2201954-2202257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):28, 168

               
               
               Conread position:628-946
               
               
               Cow position:chr16:4797925-4797605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:638-931
               
               
               Cow position:chr16:27525722-27525425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):179, 37

               
               
               Conread position:686-941
               
               
               Cow position:chr16:4080205-4079958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):160, 33

               
               
               Conread position:690-923
               
               
               Cow position:chr16:36086697-36086469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):163, 122

               
               
               Conread position:692-945
               
               
               Cow position:chr16:4019298-4019043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):149, 44

               
               
               Conread position:1-945
               
               
               Cow position:chr17:36000505-35999553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:984
               
               
               Alignm identity:618
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 55

               
               
               Conread position:2-881
               
               
               Cow position:chr17:4062513-4063435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:565
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:3-443
               
               
               Cow position:chr17:9901175-9901623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):78, 174

               
               
               Conread position:4-842
               
               
               Cow position:chr17:20414361-20413518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:879
               
               
               Alignm identity:543
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 67

               
               
               Conread position:5-893
               
               
               Cow position:chr17:2264368-2265295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:945
               
               
               Alignm identity:600
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 71

               
               
               Conread position:8-356
               
               
               Cow position:chr17:19979942-19979586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-359
               
               
               Cow position:chr17:24784355-24784713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:8-410
               
               
               Cow position:chr17:15327469-15327874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-411
               
               
               Cow position:chr17:40485-40904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-411
               
               
               Cow position:chr17:147110-147530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):45, 66

               
               
               Conread position:8-411
               
               
               Cow position:chr17:3742343-3742762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-445
               
               
               Cow position:chr17:16903069-16903516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:8-464
               
               
               Cow position:chr17:14214854-14214373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-475
               
               
               Cow position:chr17:8210837-8211328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-475
               
               
               Cow position:chr17:13418583-13419071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:330
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-476
               
               
               Cow position:chr17:18593414-18593904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:307
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:8-555
               
               
               Cow position:chr17:5307556-5306995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-881
               
               
               Cow position:chr17:2245863-2244971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:923
               
               
               Alignm identity:567
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-883
               
               
               Cow position:chr17:1655566-1654664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:564
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:8-893
               
               
               Cow position:chr17:15141150-15140233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:580
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:8-893
               
               
               Cow position:chr17:15437978-15438897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr17:15709810-15708887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-921
               
               
               Cow position:chr17:6262045-6262991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:968
               
               
               Alignm identity:590
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):116, 75

               
               
               Conread position:11-830
               
               
               Cow position:chr17:23322241-23321380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:872
               
               
               Alignm identity:543
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chr17:27792592-27791676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 59

               
               
               Conread position:14-842
               
               
               Cow position:chr17:11785082-11785938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:878
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 56

               
               
               Conread position:14-893
               
               
               Cow position:chr17:29825776-29824855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:15-300
               
               
               Cow position:chr17:7561763-7561472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 53

               
               
               Conread position:15-352
               
               
               Cow position:chr17:15649102-15649438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 53

               
               
               Conread position:15-396
               
               
               Cow position:chr17:136830-137229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:15-400
               
               
               Cow position:chr17:35300343-35299948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 66

               
               
               Conread position:15-881
               
               
               Cow position:chr17:25738487-25739391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:919
               
               
               Alignm identity:565
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:16-475
               
               
               Cow position:chr17:43146384-43145901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:16-843
               
               
               Cow position:chr17:6070728-6071590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:876
               
               
               Alignm identity:533
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:36-922
               
               
               Cow position:chr17:18100871-18099938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:158-930
               
               
               Cow position:chr17:3550913-3550119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:507
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):72, 216

               
               
               Conread position:161-465
               
               
               Cow position:chr17:4297253-4297567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:217-360
               
               
               Cow position:chr17:21618597-21618452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 90

               
               
               Conread position:224-586
               
               
               Cow position:chr17:12130366-12130725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 26

               
               
               Conread position:226-945
               
               
               Cow position:chr17:38760094-38759374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:474
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:267-830
               
               
               Cow position:chr17:37695-38281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:382
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):116, 373

               
               
               Conread position:301-843
               
               
               Cow position:chr17:18849975-18850542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:373
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 52

               
               
               Conread position:496-946
               
               
               Cow position:chr17:22500079-22500545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:299
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:595-906
               
               
               Cow position:chr17:44608156-44607841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):179, 26

               
               
               Conread position:618-787
               
               
               Cow position:chr17:29820962-29821131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:618-830
               
               
               Cow position:chr17:20703344-20703133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):196, 18

               
               
               Conread position:1-271
               
               
               Cow position:chr18:32725901-32725631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1-460
               
               
               Cow position:chr18:45399561-45400032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:2-416
               
               
               Cow position:chr18:16146617-16146217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:3-464
               
               
               Cow position:chr18:38090951-38090477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 39

               
               
               Conread position:8-294
               
               
               Cow position:chr18:27835685-27835388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:8-297
               
               
               Cow position:chr18:19354762-19355061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-339
               
               
               Cow position:chr18:38160460-38160116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 62

               
               
               Conread position:8-384
               
               
               Cow position:chr18:30762559-30762170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-400
               
               
               Cow position:chr18:1956770-1956362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-410
               
               
               Cow position:chr18:36115038-36114634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:8-410
               
               
               Cow position:chr18:36511022-36511433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-411
               
               
               Cow position:chr18:5201925-5202344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:8-411
               
               
               Cow position:chr18:16080924-16081343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-447
               
               
               Cow position:chr18:3755343-3755807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr18:18215907-18216400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:332
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr18:51344510-51344996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 53

               
               
               Conread position:8-475
               
               
               Cow position:chr18:51662548-51663041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-555
               
               
               Cow position:chr18:26244176-26243622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:370
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-555
               
               
               Cow position:chr18:55417126-55417683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:371
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-731
               
               
               Cow position:chr18:37701090-37700329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:481
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-766
               
               
               Cow position:chr18:11272444-11271645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:469
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:8-881
               
               
               Cow position:chr18:5535393-5536290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:918
               
               
               Alignm identity:555
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr18:14418372-14419295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:561
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:8-893
               
               
               Cow position:chr18:604054-603135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:572
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:8-893
               
               
               Cow position:chr18:52630845-52629929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:8-921
               
               
               Cow position:chr18:16174205-16173255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:961
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-921
               
               
               Cow position:chr18:25922791-25923742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:961
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr18:28929187-28928237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:967
               
               
               Alignm identity:599
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:8-921
               
               
               Cow position:chr18:29864206-29863246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:970
               
               
               Alignm identity:594
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-925
               
               
               Cow position:chr18:23801424-23802386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:972
               
               
               Alignm identity:595
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-925
               
               
               Cow position:chr18:28969885-28968926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:972
               
               
               Alignm identity:594
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-936
               
               
               Cow position:chr18:17322806-17323754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:974
               
               
               Alignm identity:587
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:8-945
               
               
               Cow position:chr18:24713567-24712600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:980
               
               
               Alignm identity:557
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 52

               
               
               Conread position:11-893
               
               
               Cow position:chr18:22183120-22182210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:577
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:11-893
               
               
               Cow position:chr18:32165523-32164602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chr18:51460436-51459512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:588
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-843
               
               
               Cow position:chr18:40483414-40484278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:881
               
               
               Alignm identity:548
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):110, 62

               
               
               Conread position:15-536
               
               
               Cow position:chr18:18476392-18475861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 149

               
               
               Conread position:15-555
               
               
               Cow position:chr18:33138609-33138093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:359
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:15-730
               
               
               Cow position:chr18:16092224-16092982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:481
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):66, 53

               
               
               Conread position:16-381
               
               
               Cow position:chr18:23702673-23702298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:16-536
               
               
               Cow position:chr18:6459280-6459804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:343
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):119, 60

               
               
               Conread position:17-459
               
               
               Cow position:chr18:36209941-36209493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:294
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:20-579
               
               
               Cow position:chr18:9356465-9355904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:363
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):104, 50

               
               
               Conread position:28-518
               
               
               Cow position:chr18:28674850-28674351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:333
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:33-359
               
               
               Cow position:chr18:391049-390714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 130

               
               
               Conread position:35-883
               
               
               Cow position:chr18:51484023-51484912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:901
               
               
               Alignm identity:551
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 41

               
               
               Conread position:36-359
               
               
               Cow position:chr18:5680803-5681129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:43-788
               
               
               Cow position:chr18:10221464-10222250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:497
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:135-893
               
               
               Cow position:chr18:29070957-29071750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:470
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 335

               
               
               Conread position:146-893
               
               
               Cow position:chr18:47744295-47745082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:503
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:146-925
               
               
               Cow position:chr18:31381607-31382408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:513
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:175-411
               
               
               Cow position:chr18:39293450-39293204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 203

               
               
               Conread position:177-945
               
               
               Cow position:chr18:37540287-37541096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:203-400
               
               
               Cow position:chr18:6059808-6059606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 177

               
               
               Conread position:207-565
               
               
               Cow position:chr18:28211182-28210815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:207-771
               
               
               Cow position:chr18:45657595-45657019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:359
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 5

               
               
               Conread position:207-893
               
               
               Cow position:chr18:11869095-11869816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:447
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:208-464
               
               
               Cow position:chr18:25957376-25957650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:248-511
               
               
               Cow position:chr18:40083323-40083585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 114

               
               
               Conread position:258-943
               
               
               Cow position:chr18:23855174-23855848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:446
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):47, 172

               
               
               Conread position:276-815
               
               
               Cow position:chr18:2643064-2642497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:360
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 265

               
               
               Conread position:293-562
               
               
               Cow position:chr18:37354784-37355058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:311-926
               
               
               Cow position:chr18:44189996-44190607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:412
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):82, 73

               
               
               Conread position:327-574
               
               
               Cow position:chr18:32739348-32739100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:468-946
               
               
               Cow position:chr18:51330756-51331229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:305
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):344, 20

               
               
               Conread position:612-941
               
               
               Cow position:chr18:51032998-51032660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:622-946
               
               
               Cow position:chr18:14423320-14423651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):151, 89

               
               
               Conread position:624-868
               
               
               Cow position:chr18:28268862-28268614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):166, 143

               
               
               Conread position:627-946
               
               
               Cow position:chr18:39812575-39812255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:628-886
               
               
               Cow position:chr18:14152252-14152516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):162, 171

               
               
               Conread position:628-946
               
               
               Cow position:chr18:51246724-51247047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):162, 113

               
               
               Conread position:629-946
               
               
               Cow position:chr18:51300320-51300643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 169

               
               
               Conread position:664-945
               
               
               Cow position:chr18:14816309-14816595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:666-946
               
               
               Cow position:chr18:37874679-37874385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:676-942
               
               
               Cow position:chr18:35739712-35739985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 127

               
               
               Conread position:690-936
               
               
               Cow position:chr18:41260280-41260525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):127, 102

               
               
               Conread position:3-278
               
               
               Cow position:chr19:46445920-46446193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:3-455
               
               
               Cow position:chr19:35382753-35382273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 62

               
               
               Conread position:8-385
               
               
               Cow position:chr19:748854-748474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-492
               
               
               Cow position:chr19:33905476-33905970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:318
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):81, 149

               
               
               Conread position:8-559
               
               
               Cow position:chr19:1584871-1585434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:371
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-561
               
               
               Cow position:chr19:16318204-16317639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-562
               
               
               Cow position:chr19:47041980-47041416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:383
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:8-590
               
               
               Cow position:chr19:52149129-52148548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:381
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):116, 55

               
               
               Conread position:8-722
               
               
               Cow position:chr19:13063837-13064596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 60

               
               
               Conread position:8-730
               
               
               Cow position:chr19:15445455-15444695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:483
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-788
               
               
               Cow position:chr19:7490506-7491323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:503
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:8-844
               
               
               Cow position:chr19:40834856-40833987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:878
               
               
               Alignm identity:524
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:8-881
               
               
               Cow position:chr19:206910-207824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:572
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr19:12775528-12776433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:919
               
               
               Alignm identity:566
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr19:7481532-7480600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr19:20610737-20611669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr19:28595790-28596711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:579
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-903
               
               
               Cow position:chr19:38559879-38558941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:951
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 63

               
               
               Conread position:8-905
               
               
               Cow position:chr19:5731918-5732844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:560
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:8-921
               
               
               Cow position:chr19:40750-41697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:971
               
               
               Alignm identity:591
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):126, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr19:33875821-33876780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:967
               
               
               Alignm identity:601
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:8-933
               
               
               Cow position:chr19:39183134-39182163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:986
               
               
               Alignm identity:624
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:15-410
               
               
               Cow position:chr19:3088908-3088504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:16-840
               
               
               Cow position:chr19:165709-164851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:880
               
               
               Alignm identity:536
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):108, 99

               
               
               Conread position:19-400
               
               
               Cow position:chr19:44004715-44005114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):77, 127

               
               
               Conread position:19-440
               
               
               Cow position:chr19:2736205-2736635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):65, 57

               
               
               Conread position:33-407
               
               
               Cow position:chr19:39345508-39345128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:36-719
               
               
               Cow position:chr19:20107164-20107895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:429
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:36-926
               
               
               Cow position:chr19:47094655-47095568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:601
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:64-466
               
               
               Cow position:chr19:40068829-40068393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:297
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:64-943
               
               
               Cow position:chr19:18359836-18358961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:918
               
               
               Alignm identity:575
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:92-475
               
               
               Cow position:chr19:475008-474600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 291

               
               
               Conread position:95-893
               
               
               Cow position:chr19:40017080-40016250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:849
               
               
               Alignm identity:516
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:133-775
               
               
               Cow position:chr19:890663-889983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:437
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:135-476
               
               
               Cow position:chr19:22390922-22390559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 245

               
               
               Conread position:135-933
               
               
               Cow position:chr19:30517341-30518183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:849
               
               
               Alignm identity:513
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:151-881
               
               
               Cow position:chr19:2270744-2269977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:479
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:158-415
               
               
               Cow position:chr19:48333523-48333784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 96

               
               
               Conread position:158-555
               
               
               Cow position:chr19:28741320-28740924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:177-475
               
               
               Cow position:chr19:36418580-36418886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:230-541
               
               
               Cow position:chr19:29970671-29970368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):124, 18

               
               
               Conread position:231-898
               
               
               Cow position:chr19:44587782-44588456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:436
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:242-868
               
               
               Cow position:chr19:45150205-45149560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:414
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 125

               
               
               Conread position:261-893
               
               
               Cow position:chr19:55164986-55164322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:419
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:301-906
               
               
               Cow position:chr19:27209679-27209058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:410
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):111, 61

               
               
               Conread position:317-842
               
               
               Cow position:chr19:4552370-4551842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:348
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):61, 159

               
               
               Conread position:447-790
               
               
               Cow position:chr19:48875334-48875695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 328

               
               
               Conread position:492-946
               
               
               Cow position:chr19:47099786-47100249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 17

               
               
               Conread position:496-946
               
               
               Cow position:chr19:17803625-17804089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:595-946
               
               
               Cow position:chr19:6173505-6173155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:618-941
               
               
               Cow position:chr19:24672443-24672111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:621-788
               
               
               Cow position:chr19:15871579-15871412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:621-894
               
               
               Cow position:chr19:1548781-1549058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):208, 194

               
               
               Conread position:623-943
               
               
               Cow position:chr19:33351442-33351130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:632-790
               
               
               Cow position:chr19:9115651-9115492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:643-942
               
               
               Cow position:chr19:33641154-33641452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):162, 34

               
               
               Conread position:690-924
               
               
               Cow position:chr19:32371339-32371099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 219

               
               
               Conread position:692-930
               
               
               Cow position:chr19:13300184-13299944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:1-472
               
               
               Cow position:chr2:2205972-2205477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 62

               
               
               Conread position:1-946
               
               
               Cow position:chr2:31393028-31393986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:983
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 68

               
               
               Conread position:2-320
               
               
               Cow position:chr2:47183285-47182954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:3-473
               
               
               Cow position:chr2:49632635-49633117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:3-531
               
               
               Cow position:chr2:74737351-74736826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:336
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:8-262
               
               
               Cow position:chr2:12752882-12753147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-294
               
               
               Cow position:chr2:80290915-80290617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:8-297
               
               
               Cow position:chr2:8732890-8733193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-360
               
               
               Cow position:chr2:45678315-45678673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):116, 48

               
               
               Conread position:8-381
               
               
               Cow position:chr2:29217569-29217953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-396
               
               
               Cow position:chr2:5868456-5868057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:8-410
               
               
               Cow position:chr2:4932336-4931924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 46

               
               
               Conread position:8-410
               
               
               Cow position:chr2:44477461-44477875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-411
               
               
               Cow position:chr2:2210323-2209911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 59

               
               
               Conread position:8-411
               
               
               Cow position:chr2:2214147-2213735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 59

               
               
               Conread position:8-430
               
               
               Cow position:chr2:32064198-32063765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-447
               
               
               Cow position:chr2:4452218-4452682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr2:8106274-8106768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:328
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr2:9957219-9956730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:324
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):79, 68

               
               
               Conread position:8-537
               
               
               Cow position:chr2:2456651-2456106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:366
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-542
               
               
               Cow position:chr2:49473730-49474278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:363
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:8-716
               
               
               Cow position:chr2:45212837-45212088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:471
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-775
               
               
               Cow position:chr2:9909841-9910650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:514
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-835
               
               
               Cow position:chr2:29967833-29968702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:879
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-842
               
               
               Cow position:chr2:62730373-62731253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:895
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-843
               
               
               Cow position:chr2:42668852-42667978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:886
               
               
               Alignm identity:545
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-877
               
               
               Cow position:chr2:53541789-53542703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:923
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-879
               
               
               Cow position:chr2:52498225-52497309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-881
               
               
               Cow position:chr2:6004986-6004068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:581
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr2:28647767-28646858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:922
               
               
               Alignm identity:560
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr2:43757790-43756874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr2:49629174-49630094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr2:53331651-53332571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr2:57053416-57054325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:579
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-883
               
               
               Cow position:chr2:57337807-57338726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-885
               
               
               Cow position:chr2:8120551-8121469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:579
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-885
               
               
               Cow position:chr2:48851399-48850469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr2:9963219-9962291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:606
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr2:24687534-24688459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:8-893
               
               
               Cow position:chr2:31408494-31407566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr2:39423780-39424707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr2:49302165-49301242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-921
               
               
               Cow position:chr2:2602538-2603474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:957
               
               
               Alignm identity:585
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:8-921
               
               
               Cow position:chr2:10467450-10468405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:966
               
               
               Alignm identity:589
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:8-921
               
               
               Cow position:chr2:50079413-50080371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:968
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-921
               
               
               Cow position:chr2:53004350-53003396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:966
               
               
               Alignm identity:591
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-921
               
               
               Cow position:chr2:72932237-72931277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:970
               
               
               Alignm identity:590
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:8-925
               
               
               Cow position:chr2:36982503-36983465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:973
               
               
               Alignm identity:596
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:8-941
               
               
               Cow position:chr2:1956813-1957735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:960
               
               
               Alignm identity:575
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):144, 62

               
               
               Conread position:9-400
               
               
               Cow position:chr2:74466321-74465934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:9-788
               
               
               Cow position:chr2:4834750-4833932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:530
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:9-893
               
               
               Cow position:chr2:54739337-54740252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:571
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):78, 5

               
               
               Conread position:9-893
               
               
               Cow position:chr2:59411890-59410974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:594
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 5

               
               
               Conread position:11-893
               
               
               Cow position:chr2:52620631-52621554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:14-881
               
               
               Cow position:chr2:44093229-44094135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:920
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 36

               
               
               Conread position:14-893
               
               
               Cow position:chr2:3622381-3623300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:14-893
               
               
               Cow position:chr2:14208975-14208066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 62

               
               
               Conread position:15-346
               
               
               Cow position:chr2:70709401-70709739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:15-381
               
               
               Cow position:chr2:13122942-13122588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:15-410
               
               
               Cow position:chr2:12594832-12595243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:15-466
               
               
               Cow position:chr2:26510079-26510548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:312
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:15-616
               
               
               Cow position:chr2:63519805-63520422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:406
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 161

               
               
               Conread position:15-881
               
               
               Cow position:chr2:57937254-57938163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:920
               
               
               Alignm identity:567
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:15-921
               
               
               Cow position:chr2:50981290-50980347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:959
               
               
               Alignm identity:593
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:15-946
               
               
               Cow position:chr2:11500839-11501773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:967
               
               
               Alignm identity:603
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:16-400
               
               
               Cow position:chr2:45937853-45937467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):108, 54

               
               
               Conread position:16-415
               
               
               Cow position:chr2:74669218-74669633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:20-411
               
               
               Cow position:chr2:81414493-81414900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:22-466
               
               
               Cow position:chr2:2873177-2872715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:302
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:23-410
               
               
               Cow position:chr2:25744323-25744720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:24-397
               
               
               Cow position:chr2:15238889-15239256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:26-582
               
               
               Cow position:chr2:44058161-44057597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:377
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:28-783
               
               
               Cow position:chr2:43766106-43765317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:30-752
               
               
               Cow position:chr2:75790382-75789665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:31-400
               
               
               Cow position:chr2:1317227-1316836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:31-930
               
               
               Cow position:chr2:19133969-19133031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:961
               
               
               Alignm identity:615
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:32-790
               
               
               Cow position:chr2:12695799-12695006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:465
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):92, 201

               
               
               Conread position:35-400
               
               
               Cow position:chr2:31779921-31779557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 48

               
               
               Conread position:35-450
               
               
               Cow position:chr2:24852487-24852070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:37-921
               
               
               Cow position:chr2:13068121-13067197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:564
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:39-411
               
               
               Cow position:chr2:9188178-9187796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:39-411
               
               
               Cow position:chr2:29106105-29106493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:42-466
               
               
               Cow position:chr2:67726165-67725731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:43-291
               
               
               Cow position:chr2:71520804-71520548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:88-893
               
               
               Cow position:chr2:50061068-50060217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:861
               
               
               Alignm identity:533
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 295

               
               
               Conread position:89-394
               
               
               Cow position:chr2:68941184-68940864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 294

               
               
               Conread position:95-384
               
               
               Cow position:chr2:37323773-37324074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:117-881
               
               
               Cow position:chr2:4805774-4804971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:491
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 372

               
               
               Conread position:117-893
               
               
               Cow position:chr2:4918110-4917290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:508
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 341

               
               
               Conread position:122-893
               
               
               Cow position:chr2:26905223-26906026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:816
               
               
               Alignm identity:498
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:135-411
               
               
               Cow position:chr2:6638651-6638363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 245

               
               
               Conread position:135-849
               
               
               Cow position:chr2:15750298-15751025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:468
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:135-893
               
               
               Cow position:chr2:5115916-5116727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:505
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:136-400
               
               
               Cow position:chr2:52986412-52986148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:146-893
               
               
               Cow position:chr2:34501125-34501911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:497
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:160-893
               
               
               Cow position:chr2:62999930-63000704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:490
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 218

               
               
               Conread position:160-921
               
               
               Cow position:chr2:10609769-10608980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:499
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 56

               
               
               Conread position:174-541
               
               
               Cow position:chr2:38594153-38593771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 137

               
               
               Conread position:175-464
               
               
               Cow position:chr2:58473618-58473311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 296

               
               
               Conread position:175-619
               
               
               Cow position:chr2:1207958-1207515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:175-941
               
               
               Cow position:chr2:3769425-3768639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 162

               
               
               Conread position:179-464
               
               
               Cow position:chr2:75407709-75408005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:179-786
               
               
               Cow position:chr2:71726013-71726619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:402
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:230-483
               
               
               Cow position:chr2:19813810-19814072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:237-881
               
               
               Cow position:chr2:46255583-46256266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:436
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 262

               
               
               Conread position:243-444
               
               
               Cow position:chr2:74763005-74762799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:250-787
               
               
               Cow position:chr2:61443946-61443408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:353
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):6, 128

               
               
               Conread position:266-893
               
               
               Cow position:chr2:23643249-23642587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:416
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 257

               
               
               Conread position:268-946
               
               
               Cow position:chr2:58680287-58679619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:427
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:269-787
               
               
               Cow position:chr2:24149644-24150177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:326
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:311-930
               
               
               Cow position:chr2:64791648-64791004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:410
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:490-893
               
               
               Cow position:chr2:43390892-43391312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 404

               
               
               Conread position:595-794
               
               
               Cow position:chr2:72095373-72095175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:618-936
               
               
               Cow position:chr2:37603007-37602685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:618-941
               
               
               Cow position:chr2:48104354-48104680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:625-945
               
               
               Cow position:chr2:39974958-39975287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):103, 254

               
               
               Conread position:626-843
               
               
               Cow position:chr2:5991376-5991592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):177, 104

               
               
               Conread position:627-945
               
               
               Cow position:chr2:39692499-39692817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):163, 50

               
               
               Conread position:628-790
               
               
               Cow position:chr2:85500955-85500791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:645-946
               
               
               Cow position:chr2:432317-432016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 119

               
               
               Conread position:655-946
               
               
               Cow position:chr2:21475231-21474944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:666-945
               
               
               Cow position:chr2:56463316-56463586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):9, 65

               
               
               Conread position:692-943
               
               
               Cow position:chr2:43868408-43868664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):57, 185

               
               
               Conread position:695-927
               
               
               Cow position:chr2:343884-343650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):149, 40

               
               
               Conread position:2-790
               
               
               Cow position:chr20:23899749-23900550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:822
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:2-828
               
               
               Cow position:chr20:34459943-34459084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:875
               
               
               Alignm identity:538
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:8-346
               
               
               Cow position:chr20:17659376-17659029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 72

               
               
               Conread position:8-381
               
               
               Cow position:chr20:23801258-23801641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-410
               
               
               Cow position:chr20:5537299-5537713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):120, 68

               
               
               Conread position:8-410
               
               
               Cow position:chr20:10922552-10922137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-411
               
               
               Cow position:chr20:752514-752933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr20:18355597-18356090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:327
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr20:30578258-30578747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:326
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-788
               
               
               Cow position:chr20:28163414-28164231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:506
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):79, 46

               
               
               Conread position:8-881
               
               
               Cow position:chr20:8971512-8970606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:922
               
               
               Alignm identity:567
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):155, 38

               
               
               Conread position:8-881
               
               
               Cow position:chr20:12436027-12435112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:572
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr20:23805510-23804593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:574
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr20:28444980-28444060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:8-882
               
               
               Cow position:chr20:870637-869726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:564
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):62, 82

               
               
               Conread position:8-893
               
               
               Cow position:chr20:825149-826078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:946
               
               
               Alignm identity:584
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr20:19440285-19441206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr20:20440583-20439671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-894
               
               
               Cow position:chr20:24541792-24542725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-929
               
               
               Cow position:chr20:23467297-23466313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:1001
               
               
               Alignm identity:625
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:14-881
               
               
               Cow position:chr20:21718938-21719844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:924
               
               
               Alignm identity:568
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:15-339
               
               
               Cow position:chr20:25332561-25332232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:15-869
               
               
               Cow position:chr20:7598478-7597581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:905
               
               
               Alignm identity:547
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):66, 142

               
               
               Conread position:16-730
               
               
               Cow position:chr20:20185133-20185868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:457
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):136, 13

               
               
               Conread position:23-587
               
               
               Cow position:chr20:3307236-3307793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:361
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:23-893
               
               
               Cow position:chr20:6136607-6135693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:578
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:23-893
               
               
               Cow position:chr20:16560160-16559234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:587
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:29-921
               
               
               Cow position:chr20:25846233-25845298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:578
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:35-893
               
               
               Cow position:chr20:39233623-39234529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:921
               
               
               Alignm identity:580
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 351

               
               
               Conread position:38-398
               
               
               Cow position:chr20:14851609-14851244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:54-400
               
               
               Cow position:chr20:15294380-15294742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:92-893
               
               
               Cow position:chr20:3809318-3808475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:858
               
               
               Alignm identity:539
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 291

               
               
               Conread position:135-893
               
               
               Cow position:chr20:30385749-30384947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:485
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 712

               
               
               Conread position:137-411
               
               
               Cow position:chr20:8200716-8201002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 243

               
               
               Conread position:146-883
               
               
               Cow position:chr20:38956650-38957428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:488
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:149-942
               
               
               Cow position:chr20:924978-924169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:518
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):120, 12

               
               
               Conread position:179-842
               
               
               Cow position:chr20:35108644-35107941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:437
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 199

               
               
               Conread position:207-562
               
               
               Cow position:chr20:19205376-19205016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:261-923
               
               
               Cow position:chr20:30213823-30213162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:430
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):53, 114

               
               
               Conread position:435-926
               
               
               Cow position:chr20:3134518-3135026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:326
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:595-946
               
               
               Cow position:chr20:1534543-1534186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:603-942
               
               
               Cow position:chr20:7608595-7608937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):223, 50

               
               
               Conread position:618-883
               
               
               Cow position:chr20:28102453-28102724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:618-894
               
               
               Cow position:chr20:14872716-14872433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:621-946
               
               
               Cow position:chr20:8094698-8094370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):169, 139

               
               
               Conread position:623-941
               
               
               Cow position:chr20:16975289-16974971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):164, 232

               
               
               Conread position:668-944
               
               
               Cow position:chr20:2890516-2890233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:704-930
               
               
               Cow position:chr20:24494099-24494330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:1-554
               
               
               Cow position:chr21:2459315-2459863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:353
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 122

               
               
               Conread position:2-297
               
               
               Cow position:chr21:36981122-36981414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 44

               
               
               Conread position:2-407
               
               
               Cow position:chr21:36978430-36978021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 65

               
               
               Conread position:5-353
               
               
               Cow position:chr21:10569172-10569530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:8-246
               
               
               Cow position:chr21:7163502-7163255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-294
               
               
               Cow position:chr21:33318024-33317727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:8-297
               
               
               Cow position:chr21:11291168-11291468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:8-348
               
               
               Cow position:chr21:45117149-45117487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):116, 59

               
               
               Conread position:8-359
               
               
               Cow position:chr21:46969202-46968841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):126, 216

               
               
               Conread position:8-363
               
               
               Cow position:chr21:21917962-21918328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-410
               
               
               Cow position:chr21:7154813-7155226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-410
               
               
               Cow position:chr21:35781370-35780970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):128, 38

               
               
               Conread position:8-464
               
               
               Cow position:chr21:4481775-4482257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-464
               
               
               Cow position:chr21:7063191-7062709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:323
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-464
               
               
               Cow position:chr21:17143155-17143638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-473
               
               
               Cow position:chr21:39225577-39225091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr21:32397572-32397079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:323
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-515
               
               
               Cow position:chr21:24647305-24647818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:339
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:8-541
               
               
               Cow position:chr21:42960569-42960047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:352
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:8-789
               
               
               Cow position:chr21:4252143-4251395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:500
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:8-842
               
               
               Cow position:chr21:37373705-37374567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:881
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr21:5019625-5020543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:571
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr21:6966981-6966075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:923
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 59

               
               
               Conread position:8-885
               
               
               Cow position:chr21:30596610-30595688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:571
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr21:2513330-2514260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr21:27149077-27148144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr21:27621018-27620092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr21:36375467-36376398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:596
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr21:41797244-41796313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-921
               
               
               Cow position:chr21:47647815-47648777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:978
               
               
               Alignm identity:604
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):116, 148

               
               
               Conread position:8-933
               
               
               Cow position:chr21:1195024-1195988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:978
               
               
               Alignm identity:601
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:11-294
               
               
               Cow position:chr21:27068479-27068184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:14-477
               
               
               Cow position:chr21:40082050-40082508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:15-391
               
               
               Cow position:chr21:10285653-10286033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:15-926
               
               
               Cow position:chr21:2418692-2419639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:962
               
               
               Alignm identity:569
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:16-461
               
               
               Cow position:chr21:38019722-38020188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:17-942
               
               
               Cow position:chr21:79518-78572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:970
               
               
               Alignm identity:594
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:18-303
               
               
               Cow position:chr21:22943105-22943402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:23-941
               
               
               Cow position:chr21:32895703-32894765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:961
               
               
               Alignm identity:586
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:37-921
               
               
               Cow position:chr21:13112882-13111961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:587
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:42-893
               
               
               Cow position:chr21:19352350-19351453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:902
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:56-359
               
               
               Cow position:chr21:38012660-38012969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 48

               
               
               Conread position:56-885
               
               
               Cow position:chr21:33256082-33256958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:886
               
               
               Alignm identity:548
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:57-475
               
               
               Cow position:chr21:15398448-15398004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:57-921
               
               
               Cow position:chr21:148675-149584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:918
               
               
               Alignm identity:567
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:88-921
               
               
               Cow position:chr21:42916353-42917230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:889
               
               
               Alignm identity:547
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:117-790
               
               
               Cow position:chr21:12910730-12911441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:135-400
               
               
               Cow position:chr21:5544040-5543763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 245

               
               
               Conread position:135-790
               
               
               Cow position:chr21:30872374-30873046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:136-562
               
               
               Cow position:chr21:21786285-21786708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:138-562
               
               
               Cow position:chr21:29726805-29727229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 23

               
               
               Conread position:148-474
               
               
               Cow position:chr21:12097168-12096861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:149-870
               
               
               Cow position:chr21:4406542-4407259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:474
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:158-410
               
               
               Cow position:chr21:25521663-25521403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:160-475
               
               
               Cow position:chr21:47976644-47976979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 218

               
               
               Conread position:207-620
               
               
               Cow position:chr21:3922947-3923388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 335

               
               
               Conread position:213-893
               
               
               Cow position:chr21:4899276-4898556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:452
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 317

               
               
               Conread position:225-465
               
               
               Cow position:chr21:28892861-28893111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):88, 80

               
               
               Conread position:230-945
               
               
               Cow position:chr21:25604744-25604022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:457
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:278-893
               
               
               Cow position:chr21:39428161-39428810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:410
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 244

               
               
               Conread position:311-881
               
               
               Cow position:chr21:33317574-33316969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:375
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 226

               
               
               Conread position:327-893
               
               
               Cow position:chr21:11508747-11509349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:379
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 501

               
               
               Conread position:595-929
               
               
               Cow position:chr21:12099632-12099977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 106

               
               
               Conread position:619-827
               
               
               Cow position:chr21:436527-436737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 182

               
               
               Conread position:620-934
               
               
               Cow position:chr21:39738390-39738071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):161, 32

               
               
               Conread position:621-946
               
               
               Cow position:chr21:21623411-21623741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):208, 113

               
               
               Conread position:621-946
               
               
               Cow position:chr21:28056446-28056767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:621-946
               
               
               Cow position:chr21:28729770-28730099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):196, 97

               
               
               Conread position:622-937
               
               
               Cow position:chr21:11077822-11077503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 55

               
               
               Conread position:623-945
               
               
               Cow position:chr21:11460221-11460542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:626-926
               
               
               Cow position:chr21:24223160-24223462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:626-945
               
               
               Cow position:chr21:30162073-30161769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):214, 34

               
               
               Conread position:626-945
               
               
               Cow position:chr21:30650033-30649714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:1-560
               
               
               Cow position:chr22:12942284-12941722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:365
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):84, 62

               
               
               Conread position:1-946
               
               
               Cow position:chr22:23941887-23940947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:976
               
               
               Alignm identity:590
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):150, 7

               
               
               Conread position:2-391
               
               
               Cow position:chr22:14156862-14156468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 5

               
               
               Conread position:2-945
               
               
               Cow position:chr22:36356373-36357346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:986
               
               
               Alignm identity:608
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 44

               
               
               Conread position:7-359
               
               
               Cow position:chr22:32205373-32205729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):108, 69

               
               
               Conread position:7-881
               
               
               Cow position:chr22:558396-557479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:571
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):117, 69

               
               
               Conread position:7-883
               
               
               Cow position:chr22:21591733-21592650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:8-243
               
               
               Cow position:chr22:44398741-44398985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-297
               
               
               Cow position:chr22:8132476-8132182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-354
               
               
               Cow position:chr22:6334122-6334475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 68

               
               
               Conread position:8-359
               
               
               Cow position:chr22:15277684-15278045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-384
               
               
               Cow position:chr22:18029581-18029967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-447
               
               
               Cow position:chr22:37537167-37536710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:8-475
               
               
               Cow position:chr22:11802743-11802253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-552
               
               
               Cow position:chr22:46579411-46578862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:350
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 38

               
               
               Conread position:8-753
               
               
               Cow position:chr22:20238526-20237741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:792
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-769
               
               
               Cow position:chr22:44101029-44100232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:501
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):125, 70

               
               
               Conread position:8-842
               
               
               Cow position:chr22:980596-981474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:893
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 49

               
               
               Conread position:8-892
               
               
               Cow position:chr22:43235153-43236071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr22:539440-540369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr22:10578181-10577253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr22:42993482-42994409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:8-893
               
               
               Cow position:chr22:45280250-45281184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:946
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:9-410
               
               
               Cow position:chr22:132340-131956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):124, 54

               
               
               Conread position:11-413
               
               
               Cow position:chr22:28998223-28997806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chr22:10907889-10906970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 71

               
               
               Conread position:11-893
               
               
               Cow position:chr22:27307655-27306728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:595
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:14-881
               
               
               Cow position:chr22:696239-697156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:920
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:14-893
               
               
               Cow position:chr22:3276037-3275122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:15-272
               
               
               Cow position:chr22:13662771-13663033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 62

               
               
               Conread position:15-410
               
               
               Cow position:chr22:41242746-41243149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:15-881
               
               
               Cow position:chr22:28784431-28785343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:922
               
               
               Alignm identity:572
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:15-885
               
               
               Cow position:chr22:35669352-35668435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:573
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 149

               
               
               Conread position:15-929
               
               
               Cow position:chr22:3759493-3758568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:964
               
               
               Alignm identity:607
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 61

               
               
               Conread position:17-893
               
               
               Cow position:chr22:29854174-29855084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:574
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:22-773
               
               
               Cow position:chr22:37997924-37997151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:497
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:24-881
               
               
               Cow position:chr22:41847225-41846341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:901
               
               
               Alignm identity:545
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:32-359
               
               
               Cow position:chr22:31581812-31581490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 45

               
               
               Conread position:70-881
               
               
               Cow position:chr22:19601434-19600578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:864
               
               
               Alignm identity:526
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:117-925
               
               
               Cow position:chr22:41169323-41170161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:857
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:135-885
               
               
               Cow position:chr22:10601307-10602085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:476
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 407

               
               
               Conread position:135-946
               
               
               Cow position:chr22:8647339-8646493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:869
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:150-555
               
               
               Cow position:chr22:8768223-8768635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:158-843
               
               
               Cow position:chr22:12729189-12728477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:430
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:160-475
               
               
               Cow position:chr22:18196739-18197074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 218

               
               
               Conread position:160-788
               
               
               Cow position:chr22:8487412-8486747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:413
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 218

               
               
               Conread position:168-407
               
               
               Cow position:chr22:17812156-17811907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 210

               
               
               Conread position:207-555
               
               
               Cow position:chr22:22934285-22934639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 277

               
               
               Conread position:276-790
               
               
               Cow position:chr22:31110015-31110545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:340
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:311-921
               
               
               Cow position:chr22:39465922-39465277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:395
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 219

               
               
               Conread position:621-924
               
               
               Cow position:chr22:36852875-36852569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):169, 107

               
               
               Conread position:621-941
               
               
               Cow position:chr22:8258953-8258638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):309, 122

               
               
               Conread position:622-941
               
               
               Cow position:chr22:40775135-40775451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):207, 66

               
               
               Conread position:623-945
               
               
               Cow position:chr22:13588072-13587747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):112, 17

               
               
               Conread position:626-793
               
               
               Cow position:chr22:29210044-29209881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):121, 76

               
               
               Conread position:2-407
               
               
               Cow position:chr23:16612499-16612091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:2-788
               
               
               Cow position:chr23:8705156-8705980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:519
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:2-893
               
               
               Cow position:chr23:2321649-2320717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:944
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:3-464
               
               
               Cow position:chr23:20178269-20177801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 44

               
               
               Conread position:8-320
               
               
               Cow position:chr23:41142645-41142965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-410
               
               
               Cow position:chr23:8289723-8290139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:8-410
               
               
               Cow position:chr23:37200215-37199801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-464
               
               
               Cow position:chr23:36029081-36028599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:320
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:8-475
               
               
               Cow position:chr23:943277-943770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr23:36097119-36097612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-788
               
               
               Cow position:chr23:19491857-19492678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:830
               
               
               Alignm identity:510
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-788
               
               
               Cow position:chr23:22169185-22170009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:515
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-823
               
               
               Cow position:chr23:3708707-3709556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:864
               
               
               Alignm identity:539
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:8-842
               
               
               Cow position:chr23:22145001-22144133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:877
               
               
               Alignm identity:529
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-843
               
               
               Cow position:chr23:4890993-4891873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:888
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr23:15527889-15528804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:571
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-889
               
               
               Cow position:chr23:14960648-14959727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:575
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr23:609019-609957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:949
               
               
               Alignm identity:588
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):67, 238

               
               
               Conread position:8-893
               
               
               Cow position:chr23:21773613-21772681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:594
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr23:25350656-25351588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:11-411
               
               
               Cow position:chr23:15568621-15568204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-788
               
               
               Cow position:chr23:4080444-4081264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chr23:28221012-28221929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:16-868
               
               
               Cow position:chr23:14264657-14265552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:903
               
               
               Alignm identity:548
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:27-463
               
               
               Cow position:chr23:14572703-14572256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):60, 125

               
               
               Conread position:42-788
               
               
               Cow position:chr23:19316818-19317607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:70-464
               
               
               Cow position:chr23:22989515-22989099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 226

               
               
               Conread position:127-893
               
               
               Cow position:chr23:21009185-21008376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:522
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):30, 253

               
               
               Conread position:135-477
               
               
               Cow position:chr23:19621411-19621051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:135-893
               
               
               Cow position:chr23:3285191-3285987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:504
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:143-946
               
               
               Cow position:chr23:15350668-15351487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:841
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:168-893
               
               
               Cow position:chr23:24119023-24119783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:473
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:174-886
               
               
               Cow position:chr23:11330927-11331625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:458
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:175-360
               
               
               Cow position:chr23:14264365-14264557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:175-788
               
               
               Cow position:chr23:1249058-1248408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:404
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 203

               
               
               Conread position:207-783
               
               
               Cow position:chr23:2368326-2368938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:375
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 321

               
               
               Conread position:230-862
               
               
               Cow position:chr23:38721108-38721742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:422
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:255-459
               
               
               Cow position:chr23:18942194-18941979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:423-936
               
               
               Cow position:chr23:10131652-10131125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:341
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:487-926
               
               
               Cow position:chr23:11386243-11385783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 185

               
               
               Conread position:601-843
               
               
               Cow position:chr23:9607836-9608076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):216, 5

               
               
               Conread position:618-894
               
               
               Cow position:chr23:30803888-30803616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):187, 57

               
               
               Conread position:618-923
               
               
               Cow position:chr23:12829447-12829134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):99, 149

               
               
               Conread position:626-868
               
               
               Cow position:chr23:27146335-27146088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:629-924
               
               
               Cow position:chr23:7962189-7961896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):160, 71

               
               
               Conread position:679-946
               
               
               Cow position:chr23:34589581-34589319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):138, 56

               
               
               Conread position:1-400
               
               
               Cow position:chr24:2711812-2712216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:1-400
               
               
               Cow position:chr24:13114981-13115386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:2-407
               
               
               Cow position:chr24:38004557-38004141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 61

               
               
               Conread position:2-921
               
               
               Cow position:chr24:12333337-12332357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:989
               
               
               Alignm identity:605
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:3-410
               
               
               Cow position:chr24:41231000-41231406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 154

               
               
               Conread position:8-297
               
               
               Cow position:chr24:3849958-3850259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-320
               
               
               Cow position:chr24:14350390-14350714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-381
               
               
               Cow position:chr24:19884684-19885070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-400
               
               
               Cow position:chr24:23093653-23093246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-400
               
               
               Cow position:chr24:23096391-23095984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-407
               
               
               Cow position:chr24:12088594-12089001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:8-410
               
               
               Cow position:chr24:12126702-12126282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:8-410
               
               
               Cow position:chr24:16559913-16559496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-447
               
               
               Cow position:chr24:13234630-13235093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:299
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-476
               
               
               Cow position:chr24:21248557-21248063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:325
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-545
               
               
               Cow position:chr24:14195468-14194920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:367
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-783
               
               
               Cow position:chr24:208611-207798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-788
               
               
               Cow position:chr24:7063956-7064778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-830
               
               
               Cow position:chr24:6411870-6412729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:877
               
               
               Alignm identity:551
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-836
               
               
               Cow position:chr24:6440143-6441016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:880
               
               
               Alignm identity:542
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-836
               
               
               Cow position:chr24:12698627-12697753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:882
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-881
               
               
               Cow position:chr24:20366756-20367676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-883
               
               
               Cow position:chr24:41004881-41005790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:924
               
               
               Alignm identity:565
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr24:17323083-17324015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr24:19689187-19688258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-910
               
               
               Cow position:chr24:8606737-8607668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:963
               
               
               Alignm identity:599
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr24:13190562-13191511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:965
               
               
               Alignm identity:588
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-933
               
               
               Cow position:chr24:14759271-14760256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:992
               
               
               Alignm identity:608
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:11-893
               
               
               Cow position:chr24:16082094-16081165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:11-893
               
               
               Cow position:chr24:40551020-40551946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:12-395
               
               
               Cow position:chr24:25009880-25009490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:38-893
               
               
               Cow position:chr24:6963269-6964172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:914
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:40-459
               
               
               Cow position:chr24:17410861-17411288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:65-550
               
               
               Cow position:chr24:25291302-25291782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:318
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):17, 69

               
               
               Conread position:69-475
               
               
               Cow position:chr24:25371385-25371818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):18, 316

               
               
               Conread position:135-411
               
               
               Cow position:chr24:34373112-34373400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 245

               
               
               Conread position:137-527
               
               
               Cow position:chr24:19890457-19890844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):165, 16

               
               
               Conread position:155-458
               
               
               Cow position:chr24:12466782-12467104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:157-392
               
               
               Cow position:chr24:27960304-27960056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:158-480
               
               
               Cow position:chr24:36479351-36479008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 169

               
               
               Conread position:168-464
               
               
               Cow position:chr24:43906009-43906325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 210

               
               
               Conread position:171-773
               
               
               Cow position:chr24:1295699-1295061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:407
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:184-744
               
               
               Cow position:chr24:17038887-17039440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:363
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:313-893
               
               
               Cow position:chr24:14352058-14352673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:380
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 58

               
               
               Conread position:353-841
               
               
               Cow position:chr24:37223038-37222549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:595-923
               
               
               Cow position:chr24:32363321-32362981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):27, 221

               
               
               Conread position:621-926
               
               
               Cow position:chr24:44931979-44931682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):126, 79

               
               
               Conread position:622-925
               
               
               Cow position:chr24:33936975-33937284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):207, 254

               
               
               Conread position:626-947
               
               
               Cow position:chr24:27586827-27587153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 205

               
               
               Conread position:1-400
               
               
               Cow position:chr25:21415880-21415475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):118, 41

               
               
               Conread position:1-734
               
               
               Cow position:chr25:19017304-19016544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:481
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:2-407
               
               
               Cow position:chr25:34667641-34667233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 61

               
               
               Conread position:3-415
               
               
               Cow position:chr25:35562423-35562005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):110, 65

               
               
               Conread position:3-460
               
               
               Cow position:chr25:23360270-23360748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 161

               
               
               Conread position:3-514
               
               
               Cow position:chr25:49286-49809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:345
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:3-802
               
               
               Cow position:chr25:18422810-18423630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:511
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:5-881
               
               
               Cow position:chr25:28861962-28862879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:575
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:8-320
               
               
               Cow position:chr25:34510655-34510334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-360
               
               
               Cow position:chr25:32448241-32448606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 8

               
               
               Conread position:8-388
               
               
               Cow position:chr25:26989650-26990026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:8-407
               
               
               Cow position:chr25:19922906-19923318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-410
               
               
               Cow position:chr25:10635179-10634760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-475
               
               
               Cow position:chr25:14537574-14537081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:332
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr25:20773244-20772751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:318
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-476
               
               
               Cow position:chr25:38597250-38597733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:8-921
               
               
               Cow position:chr25:18887384-18886434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:979
               
               
               Alignm identity:619
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-933
               
               
               Cow position:chr25:26281113-26282085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:982
               
               
               Alignm identity:605
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:15-431
               
               
               Cow position:chr25:18191290-18190860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:15-494
               
               
               Cow position:chr25:34344607-34344105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:329
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:16-337
               
               
               Cow position:chr25:1077931-1078256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:16-399
               
               
               Cow position:chr25:30129429-30129029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:16-946
               
               
               Cow position:chr25:34495041-34494074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:985
               
               
               Alignm identity:615
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:17-893
               
               
               Cow position:chr25:32578562-32577644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:24-414
               
               
               Cow position:chr25:25481745-25481353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 43

               
               
               Conread position:31-945
               
               
               Cow position:chr25:32566017-32566933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:35-922
               
               
               Cow position:chr25:17586898-17585974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:42-585
               
               
               Cow position:chr25:38634485-38635041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:372
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:69-411
               
               
               Cow position:chr25:35648832-35648473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 316

               
               
               Conread position:130-381
               
               
               Cow position:chr25:19999552-19999799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:138-548
               
               
               Cow position:chr25:25289432-25289866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):18, 379

               
               
               Conread position:149-562
               
               
               Cow position:chr25:26794956-26795348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:179-437
               
               
               Cow position:chr25:26473169-26473434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 196

               
               
               Conread position:200-474
               
               
               Cow position:chr25:16986156-16986449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:376-946
               
               
               Cow position:chr25:30113015-30112443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:361
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:387-942
               
               
               Cow position:chr25:25731055-25731610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:362
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:390-942
               
               
               Cow position:chr25:14011335-14011912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:384
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:422-780
               
               
               Cow position:chr25:38803446-38803796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:487-818
               
               
               Cow position:chr25:4152542-4152882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:564-946
               
               
               Cow position:chr25:23462053-23462447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 183

               
               
               Conread position:574-778
               
               
               Cow position:chr25:24301053-24300836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:619-945
               
               
               Cow position:chr25:25239368-25239036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):129, 100

               
               
               Conread position:621-926
               
               
               Cow position:chr25:14767435-14767139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):224, 39

               
               
               Conread position:622-881
               
               
               Cow position:chr25:20633510-20633768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):230, 174

               
               
               Conread position:626-868
               
               
               Cow position:chr25:20368824-20369071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 112

               
               
               Conread position:626-945
               
               
               Cow position:chr25:1025703-1025373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):149, 108

               
               
               Conread position:628-930
               
               
               Cow position:chr25:26795595-26795895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:666-908
               
               
               Cow position:chr25:14748564-14748327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):177, 62

               
               
               Conread position:669-946
               
               
               Cow position:chr25:24664485-24664204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):148, 36

               
               
               Conread position:674-942
               
               
               Cow position:chr25:16522873-16523144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 82

               
               
               Conread position:695-926
               
               
               Cow position:chr25:13965731-13965963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):144, 13

               
               
               Conread position:2-395
               
               
               Cow position:chr26:35058470-35058854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):206, 62

               
               
               Conread position:8-410
               
               
               Cow position:chr26:17430160-17429742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-410
               
               
               Cow position:chr26:32933171-32932755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 68

               
               
               Conread position:8-421
               
               
               Cow position:chr26:21824305-21823883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-464
               
               
               Cow position:chr26:6425341-6425823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-475
               
               
               Cow position:chr26:2418053-2417560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-555
               
               
               Cow position:chr26:35561550-35562114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:374
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-620
               
               
               Cow position:chr26:30785116-30785763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:406
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-754
               
               
               Cow position:chr26:3028284-3027486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:498
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-769
               
               
               Cow position:chr26:19349148-19348353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:495
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-788
               
               
               Cow position:chr26:18035260-18036069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:827
               
               
               Alignm identity:507
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):113, 59

               
               
               Conread position:8-843
               
               
               Cow position:chr26:30587003-30586122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:891
               
               
               Alignm identity:552
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-879
               
               
               Cow position:chr26:35122900-35121981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-881
               
               
               Cow position:chr26:12586185-12585275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr26:2349828-2348897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr26:18856468-18857394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr26:23888758-23889686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:946
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr26:28707716-28706784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-935
               
               
               Cow position:chr26:17394539-17393577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:977
               
               
               Alignm identity:592
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):61, 76

               
               
               Conread position:9-360
               
               
               Cow position:chr26:8611792-8611447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):132, 61

               
               
               Conread position:9-541
               
               
               Cow position:chr26:21416528-21415989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:372
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:14-352
               
               
               Cow position:chr26:17995020-17994684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:15-475
               
               
               Cow position:chr26:26306901-26306438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:16-893
               
               
               Cow position:chr26:8872195-8873120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:544
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:24-476
               
               
               Cow position:chr26:28720691-28721153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:26-412
               
               
               Cow position:chr26:19012300-19012698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:35-770
               
               
               Cow position:chr26:6845144-6844364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:792
               
               
               Alignm identity:500
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:56-537
               
               
               Cow position:chr26:4440812-4441309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:329
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:60-788
               
               
               Cow position:chr26:4122062-4122833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:480
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:130-400
               
               
               Cow position:chr26:26293128-26293404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:135-473
               
               
               Cow position:chr26:4601712-4601357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 29

               
               
               Conread position:205-555
               
               
               Cow position:chr26:8647642-8647979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:260-945
               
               
               Cow position:chr26:33911428-33910743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:441
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 69

               
               
               Conread position:301-635
               
               
               Cow position:chr26:10769146-10769505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 158

               
               
               Conread position:318-771
               
               
               Cow position:chr26:16722321-16722798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:345-945
               
               
               Cow position:chr26:8191186-8190549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:392
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 197

               
               
               Conread position:621-881
               
               
               Cow position:chr26:21415568-21415301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:622-787
               
               
               Cow position:chr26:15891979-15892144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:691-885
               
               
               Cow position:chr26:14205755-14205941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):153, 15

               
               
               Conread position:2-359
               
               
               Cow position:chr27:30571118-30571483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):85, 66

               
               
               Conread position:2-416
               
               
               Cow position:chr27:12263130-12262724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:5-881
               
               
               Cow position:chr27:24296948-24296051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:918
               
               
               Alignm identity:538
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):5, 66

               
               
               Conread position:8-359
               
               
               Cow position:chr27:1847075-1846717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:8-410
               
               
               Cow position:chr27:9990907-9990493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:8-416
               
               
               Cow position:chr27:797307-796888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-464
               
               
               Cow position:chr27:15034796-15034313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 157

               
               
               Conread position:8-841
               
               
               Cow position:chr27:4981677-4982548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:881
               
               
               Alignm identity:537
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr27:16032090-16031168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:596
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:8-921
               
               
               Cow position:chr27:166613-165661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:968
               
               
               Alignm identity:585
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:8-921
               
               
               Cow position:chr27:3233221-3232276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:968
               
               
               Alignm identity:610
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-921
               
               
               Cow position:chr27:12749333-12750283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:969
               
               
               Alignm identity:592
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-929
               
               
               Cow position:chr27:19524415-19523442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:982
               
               
               Alignm identity:602
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):72, 156

               
               
               Conread position:15-464
               
               
               Cow position:chr27:26327369-26327840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:306
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):107, 61

               
               
               Conread position:20-397
               
               
               Cow position:chr27:16965235-16964863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:23-872
               
               
               Cow position:chr27:23905125-23906014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:904
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:42-946
               
               
               Cow position:chr27:24114479-24115405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:955
               
               
               Alignm identity:586
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:62-828
               
               
               Cow position:chr27:12147292-12146484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:518
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:64-475
               
               
               Cow position:chr27:22734129-22733713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 314

               
               
               Conread position:88-426
               
               
               Cow position:chr27:19690972-19690626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:135-475
               
               
               Cow position:chr27:1031270-1031632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:146-411
               
               
               Cow position:chr27:17404419-17404146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:149-365
               
               
               Cow position:chr27:22036921-22037142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:160-411
               
               
               Cow position:chr27:1082444-1082704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:231-766
               
               
               Cow position:chr27:29036841-29036271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:355
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:235-925
               
               
               Cow position:chr27:26621710-26620994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:465
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:621-942
               
               
               Cow position:chr27:31547595-31547258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:628-787
               
               
               Cow position:chr27:7667743-7667902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:677-926
               
               
               Cow position:chr27:15258311-15258566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):153, 138

               
               
               Conread position:1-376
               
               
               Cow position:chr28:8907026-8906638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:2-297
               
               
               Cow position:chr28:5338356-5338052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 61

               
               
               Conread position:2-396
               
               
               Cow position:chr28:17188732-17189126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:3-943
               
               
               Cow position:chr28:17250206-17249259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:983
               
               
               Alignm identity:618
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 117

               
               
               Conread position:5-407
               
               
               Cow position:chr28:10471996-10472408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:5-843
               
               
               Cow position:chr28:33638909-33639794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:893
               
               
               Alignm identity:553
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:8-384
               
               
               Cow position:chr28:21378882-21379269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:8-410
               
               
               Cow position:chr28:8381392-8381808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-411
               
               
               Cow position:chr28:25849287-25848868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr28:25167807-25167325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 60

               
               
               Conread position:8-782
               
               
               Cow position:chr28:30534718-30533900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:514
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-788
               
               
               Cow position:chr28:24591217-24592038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:827
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:8-849
               
               
               Cow position:chr28:15352745-15351893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:884
               
               
               Alignm identity:536
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):125, 95

               
               
               Conread position:8-881
               
               
               Cow position:chr28:785013-785931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:581
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr28:5112372-5111457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr28:7335336-7336247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:917
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr28:29037301-29036388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:570
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr28:30097221-30098140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-882
               
               
               Cow position:chr28:33254666-33255586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:579
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr28:2644062-2644990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:595
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr28:6536449-6535523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:8-893
               
               
               Cow position:chr28:10302189-10303113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:575
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):113, 55

               
               
               Conread position:8-893
               
               
               Cow position:chr28:24885204-24886135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:946
               
               
               Alignm identity:602
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr28:28470366-28471300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:946
               
               
               Alignm identity:585
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):82, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr28:28928179-28929108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:944
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr28:34582267-34583199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:595
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-894
               
               
               Cow position:chr28:6777660-6776726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:575
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:8-896
               
               
               Cow position:chr28:1955715-1956647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:594
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-899
               
               
               Cow position:chr28:1507215-1508157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:950
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-921
               
               
               Cow position:chr28:15918177-15917223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:963
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr28:34596590-34597548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:967
               
               
               Alignm identity:591
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):74, 149

               
               
               Conread position:15-346
               
               
               Cow position:chr28:20266162-20265823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):70, 8

               
               
               Conread position:15-464
               
               
               Cow position:chr28:7743495-7743967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:15-464
               
               
               Cow position:chr28:17390765-17391240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:317
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:15-783
               
               
               Cow position:chr28:1165533-1164729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:506
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:15-881
               
               
               Cow position:chr28:1215477-1214566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:919
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:15-881
               
               
               Cow position:chr28:5939843-5940750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:916
               
               
               Alignm identity:560
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:15-929
               
               
               Cow position:chr28:5749348-5748393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:975
               
               
               Alignm identity:616
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:15-941
               
               
               Cow position:chr28:28441113-28442058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:971
               
               
               Alignm identity:611
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:16-291
               
               
               Cow position:chr28:29760271-29759989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:27-770
               
               
               Cow position:chr28:18105474-18104721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:477
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:35-893
               
               
               Cow position:chr28:483337-482433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:915
               
               
               Alignm identity:568
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):46, 140

               
               
               Conread position:62-361
               
               
               Cow position:chr28:34314693-34315004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:88-475
               
               
               Cow position:chr28:14110495-14110907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 295

               
               
               Conread position:131-352
               
               
               Cow position:chr28:19185310-19185090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):170, 30

               
               
               Conread position:143-893
               
               
               Cow position:chr28:6477705-6478494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:499
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:149-732
               
               
               Cow position:chr28:22387453-22386859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:375
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:175-475
               
               
               Cow position:chr28:14891469-14891789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 201

               
               
               Conread position:280-893
               
               
               Cow position:chr28:5636678-5637325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:405
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 243

               
               
               Conread position:324-541
               
               
               Cow position:chr28:16657979-16658201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:404-946
               
               
               Cow position:chr28:22791278-22791801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:351
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:420-790
               
               
               Cow position:chr28:7215130-7214752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:560-921
               
               
               Cow position:chr28:6046720-6047100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 250

               
               
               Conread position:578-921
               
               
               Cow position:chr28:31222076-31222428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:592-945
               
               
               Cow position:chr28:15004225-15004592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:621-868
               
               
               Cow position:chr28:26563184-26563436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):161, 62

               
               
               Conread position:628-935
               
               
               Cow position:chr28:30239135-30238854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:643-844
               
               
               Cow position:chr28:25773012-25773216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):137, 86

               
               
               Conread position:667-945
               
               
               Cow position:chr28:23916123-23916406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):162, 74

               
               
               Conread position:680-922
               
               
               Cow position:chr28:20373441-20373684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):170, 132

               
               
               Conread position:1-314
               
               
               Cow position:chr29:5340954-5340637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:1-466
               
               
               Cow position:chr29:11681020-11681481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:290
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):133, 225

               
               
               Conread position:1-788
               
               
               Cow position:chr29:33561076-33560270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:830
               
               
               Alignm identity:504
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):69, 29

               
               
               Conread position:3-881
               
               
               Cow position:chr29:13584531-13585450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 29

               
               
               Conread position:5-783
               
               
               Cow position:chr29:16346516-16347338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:513
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:5-881
               
               
               Cow position:chr29:39077401-39076484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:8-328
               
               
               Cow position:chr29:33141811-33142138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:8-330
               
               
               Cow position:chr29:15260675-15260340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-359
               
               
               Cow position:chr29:10821602-10821238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-384
               
               
               Cow position:chr29:19889894-19890276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-410
               
               
               Cow position:chr29:4518219-4518629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-410
               
               
               Cow position:chr29:40611551-40611132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:8-464
               
               
               Cow position:chr29:530082-529603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:8-464
               
               
               Cow position:chr29:13898980-13899462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-473
               
               
               Cow position:chr29:2692767-2693252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-475
               
               
               Cow position:chr29:667093-666600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr29:5785127-5785620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:326
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-475
               
               
               Cow position:chr29:16689149-16689637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:313
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):76, 55

               
               
               Conread position:8-743
               
               
               Cow position:chr29:19656218-19656992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:493
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-843
               
               
               Cow position:chr29:23979023-23979906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:890
               
               
               Alignm identity:550
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-843
               
               
               Cow position:chr29:26162521-26161638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:890
               
               
               Alignm identity:552
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-843
               
               
               Cow position:chr29:35274705-35273844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:878
               
               
               Alignm identity:542
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr29:10645094-10644177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr29:28658055-28657133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 534

               
               
               Conread position:8-881
               
               
               Cow position:chr29:42256660-42255743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:595
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-883
               
               
               Cow position:chr29:6263683-6262771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:576
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-883
               
               
               Cow position:chr29:21430538-21429622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr29:7846709-7847638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr29:15967239-15966308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr29:19525971-19525044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr29:19620952-19620022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:576
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:8-893
               
               
               Cow position:chr29:21226297-21227222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr29:32514642-32515574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:572
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr29:32557431-32556498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:944
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr29:40293650-40294553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-920
               
               
               Cow position:chr29:408941-407990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:963
               
               
               Alignm identity:585
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-921
               
               
               Cow position:chr29:2102160-2103122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:972
               
               
               Alignm identity:593
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-935
               
               
               Cow position:chr29:2464556-2463582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:992
               
               
               Alignm identity:619
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:11-662
               
               
               Cow position:chr29:15624385-15623690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:446
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:11-893
               
               
               Cow position:chr29:31095269-31094339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:577
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:14-273
               
               
               Cow position:chr29:9962728-9962994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:15-396
               
               
               Cow position:chr29:17343071-17343471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:15-400
               
               
               Cow position:chr29:36595764-36595392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):201, 55

               
               
               Conread position:15-410
               
               
               Cow position:chr29:16171785-16171380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:15-476
               
               
               Cow position:chr29:37043277-37042798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):69, 61

               
               
               Conread position:15-828
               
               
               Cow position:chr29:29703045-29702226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:838
               
               
               Alignm identity:514
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:15-881
               
               
               Cow position:chr29:46134-45229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:917
               
               
               Alignm identity:548
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:20-946
               
               
               Cow position:chr29:36627598-36628520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:969
               
               
               Alignm identity:599
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):120, 50

               
               
               Conread position:22-843
               
               
               Cow position:chr29:2839008-2838141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:879
               
               
               Alignm identity:548
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):10, 14

               
               
               Conread position:31-785
               
               
               Cow position:chr29:7656038-7655280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:33-519
               
               
               Cow position:chr29:9973041-9972545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:317
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:35-893
               
               
               Cow position:chr29:31764383-31765286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:919
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 343

               
               
               Conread position:36-464
               
               
               Cow position:chr29:27977478-27977030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:37-464
               
               
               Cow position:chr29:32893099-32893525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:80-381
               
               
               Cow position:chr29:40500600-40500288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:100-893
               
               
               Cow position:chr29:1477859-1478697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:848
               
               
               Alignm identity:527
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):24, 434

               
               
               Conread position:135-881
               
               
               Cow position:chr29:5239838-5240629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:513
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:138-429
               
               
               Cow position:chr29:39555167-39554867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:144-769
               
               
               Cow position:chr29:3563736-3564356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:402
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:171-945
               
               
               Cow position:chr29:15931782-15931000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:498
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):207, 70

               
               
               Conread position:178-843
               
               
               Cow position:chr29:31749484-31748811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:438
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:206-384
               
               
               Cow position:chr29:38757684-38757857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:206-742
               
               
               Cow position:chr29:34727183-34726660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:360
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:240-946
               
               
               Cow position:chr29:22284621-22285355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:468
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):29, 124

               
               
               Conread position:245-843
               
               
               Cow position:chr29:30358685-30358078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:409
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:258-788
               
               
               Cow position:chr29:40471241-40471802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:352
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:311-946
               
               
               Cow position:chr29:18412629-18413276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:407
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:393-923
               
               
               Cow position:chr29:33142176-33142705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:352
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:400-946
               
               
               Cow position:chr29:34121750-34121206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:610-943
               
               
               Cow position:chr29:37626611-37626273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):171, 41

               
               
               Conread position:612-945
               
               
               Cow position:chr29:321455-321114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 70

               
               
               Conread position:618-911
               
               
               Cow position:chr29:20614455-20614753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):112, 189

               
               
               Conread position:626-946
               
               
               Cow position:chr29:39371366-39371688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):191, 15

               
               
               Conread position:635-942
               
               
               Cow position:chr29:5340104-5339795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):90, 8

               
               
               Conread position:661-893
               
               
               Cow position:chr29:34288441-34288205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):168, 27

               
               
               Conread position:1-327
               
               
               Cow position:chr3:21223560-21223226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:1-562
               
               
               Cow position:chr3:67628531-67627963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:388
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:2-410
               
               
               Cow position:chr3:82930859-82931281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):8, 67

               
               
               Conread position:2-411
               
               
               Cow position:chr3:13035912-13036337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:3-749
               
               
               Cow position:chr3:67532384-67533148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:492
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:5-410
               
               
               Cow position:chr3:19754730-19754314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):7, 28

               
               
               Conread position:5-464
               
               
               Cow position:chr3:49135332-49134848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:315
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 71

               
               
               Conread position:7-881
               
               
               Cow position:chr3:66622446-66623361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:560
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):117, 69

               
               
               Conread position:8-294
               
               
               Cow position:chr3:23205650-23205353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-297
               
               
               Cow position:chr3:30990016-30989715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-353
               
               
               Cow position:chr3:64025902-64025544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-395
               
               
               Cow position:chr3:7156482-7156084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-400
               
               
               Cow position:chr3:2708636-2708234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:8-400
               
               
               Cow position:chr3:42151551-42151151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-400
               
               
               Cow position:chr3:58887901-58887502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):73, 138

               
               
               Conread position:8-411
               
               
               Cow position:chr3:3525274-3525675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-473
               
               
               Cow position:chr3:24443866-24443373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-475
               
               
               Cow position:chr3:18113458-18112966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-475
               
               
               Cow position:chr3:29329054-29328561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:324
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-475
               
               
               Cow position:chr3:34505118-34504626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:333
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-783
               
               
               Cow position:chr3:27920678-27921497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:512
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-788
               
               
               Cow position:chr3:41082402-41083214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:830
               
               
               Alignm identity:516
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-829
               
               
               Cow position:chr3:48602484-48603343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:870
               
               
               Alignm identity:535
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:8-830
               
               
               Cow position:chr3:30616708-30615847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:871
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 68

               
               
               Conread position:8-842
               
               
               Cow position:chr3:41208367-41207489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:887
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-867
               
               
               Cow position:chr3:69931605-69930698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:915
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr3:7246876-7245955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr3:30320492-30321407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr3:32620813-32619893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr3:40337911-40336997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr3:40825627-40826547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:570
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):78, 48

               
               
               Conread position:8-881
               
               
               Cow position:chr3:72632301-72633222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:574
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:8-882
               
               
               Cow position:chr3:31121914-31120987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:576
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-883
               
               
               Cow position:chr3:18861671-18862592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-885
               
               
               Cow position:chr3:38868813-38869721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:563
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:8-893
               
               
               Cow position:chr3:15415698-15416626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:946
               
               
               Alignm identity:602
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr3:16225119-16226035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:8-893
               
               
               Cow position:chr3:19798924-19797992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:596
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr3:20380495-20379557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:958
               
               
               Alignm identity:606
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):79, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr3:26743643-26742713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr3:31020911-31021842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:585
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):74, 527

               
               
               Conread position:8-893
               
               
               Cow position:chr3:37971283-37972194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:579
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):116, 69

               
               
               Conread position:8-893
               
               
               Cow position:chr3:46859056-46858124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr3:49908784-49907873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr3:49998366-49999296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr3:64652895-64653828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr3:66969651-66968719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr3:68697739-68696805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:601
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr3:68718478-68717550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr3:68871521-68870590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:948
               
               
               Alignm identity:598
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr3:75039619-75038653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:974
               
               
               Alignm identity:602
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr3:78025204-78024247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:969
               
               
               Alignm identity:589
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-933
               
               
               Cow position:chr3:18813741-18814708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:979
               
               
               Alignm identity:605
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-935
               
               
               Cow position:chr3:68890340-68889368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:983
               
               
               Alignm identity:610
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-942
               
               
               Cow position:chr3:16885054-16884094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:983
               
               
               Alignm identity:612
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 62

               
               
               Conread position:11-222
               
               
               Cow position:chr3:62913320-62913105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:11-842
               
               
               Cow position:chr3:83766484-83767361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:886
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:14-475
               
               
               Cow position:chr3:6784644-6785130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:316
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:14-881
               
               
               Cow position:chr3:47079373-47078464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:577
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):110, 54

               
               
               Conread position:14-893
               
               
               Cow position:chr3:29574880-29573966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:579
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:14-893
               
               
               Cow position:chr3:48845237-48846165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 22

               
               
               Conread position:14-893
               
               
               Cow position:chr3:49563244-49564176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:949
               
               
               Alignm identity:615
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:15-407
               
               
               Cow position:chr3:53517835-53518240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):106, 55

               
               
               Conread position:15-881
               
               
               Cow position:chr3:45976738-45977651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:921
               
               
               Alignm identity:568
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:15-883
               
               
               Cow position:chr3:71513569-71512680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:917
               
               
               Alignm identity:566
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:15-885
               
               
               Cow position:chr3:43191035-43190116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:16-376
               
               
               Cow position:chr3:34875677-34876051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:23-893
               
               
               Cow position:chr3:57482477-57481577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:923
               
               
               Alignm identity:574
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:24-400
               
               
               Cow position:chr3:82362876-82363272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):39, 143

               
               
               Conread position:25-893
               
               
               Cow position:chr3:6713256-6714167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:922
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:35-783
               
               
               Cow position:chr3:56912134-56912878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:36-929
               
               
               Cow position:chr3:72670297-72669362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:562
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:38-562
               
               
               Cow position:chr3:82350054-82350572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:355
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:39-378
               
               
               Cow position:chr3:1652569-1652242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):169, 17

               
               
               Conread position:39-417
               
               
               Cow position:chr3:62881624-62882019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:43-411
               
               
               Cow position:chr3:32491581-32491965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:56-893
               
               
               Cow position:chr3:19882752-19883630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:891
               
               
               Alignm identity:544
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:69-893
               
               
               Cow position:chr3:24264489-24265358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:878
               
               
               Alignm identity:542
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):18, 393

               
               
               Conread position:78-458
               
               
               Cow position:chr3:21095969-21095592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:92-925
               
               
               Cow position:chr3:24573845-24572973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:891
               
               
               Alignm identity:553
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 64

               
               
               Conread position:117-562
               
               
               Cow position:chr3:62837621-62837174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 49

               
               
               Conread position:132-583
               
               
               Cow position:chr3:77062614-77062141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:135-407
               
               
               Cow position:chr3:38491814-38492096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:135-464
               
               
               Cow position:chr3:2920606-2920957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 245

               
               
               Conread position:136-790
               
               
               Cow position:chr3:22085049-22084378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:420
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 350

               
               
               Conread position:144-400
               
               
               Cow position:chr3:15724356-15724612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:149-400
               
               
               Cow position:chr3:40121203-40121459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:149-925
               
               
               Cow position:chr3:25470420-25471191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:500
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:158-617
               
               
               Cow position:chr3:53647560-53647096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:307
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):58, 138

               
               
               Conread position:160-788
               
               
               Cow position:chr3:12664323-12664984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:426
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:160-881
               
               
               Cow position:chr3:44926212-44926962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:475
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:160-893
               
               
               Cow position:chr3:49611822-49611048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:496
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):48, 310

               
               
               Conread position:175-411
               
               
               Cow position:chr3:26298615-26298369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):33, 203

               
               
               Conread position:175-946
               
               
               Cow position:chr3:48995202-48995980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:495
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:202-790
               
               
               Cow position:chr3:43345808-43345196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:403
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):35, 75

               
               
               Conread position:208-945
               
               
               Cow position:chr3:36171486-36170725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:471
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:230-557
               
               
               Cow position:chr3:24534558-24534899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:235-530
               
               
               Cow position:chr3:7949906-7949615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:237-507
               
               
               Cow position:chr3:46127024-46126747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:248-930
               
               
               Cow position:chr3:60297757-60297076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:457
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:255-601
               
               
               Cow position:chr3:61249848-61250197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:321-945
               
               
               Cow position:chr3:21223151-21222500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:415
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 212

               
               
               Conread position:400-885
               
               
               Cow position:chr3:6837694-6838183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:400-918
               
               
               Cow position:chr3:60150485-60151014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:350
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 67

               
               
               Conread position:485-941
               
               
               Cow position:chr3:69442826-69442362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:582-921
               
               
               Cow position:chr3:19825196-19824855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 192

               
               
               Conread position:587-945
               
               
               Cow position:chr3:14881684-14881310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:595-787
               
               
               Cow position:chr3:16716997-16716801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:595-945
               
               
               Cow position:chr3:10038052-10038406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 170

               
               
               Conread position:595-946
               
               
               Cow position:chr3:60263256-60262905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:596-867
               
               
               Cow position:chr3:68402820-68402541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:618-945
               
               
               Cow position:chr3:56963551-56963225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):112, 140

               
               
               Conread position:620-930
               
               
               Cow position:chr3:8564178-8563864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:620-946
               
               
               Cow position:chr3:322966-322652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:621-930
               
               
               Cow position:chr3:27222933-27223236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):196, 87

               
               
               Conread position:621-945
               
               
               Cow position:chr3:8098236-8098563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:621-946
               
               
               Cow position:chr3:51069019-51068687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:626-866
               
               
               Cow position:chr3:80307124-80307367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:626-942
               
               
               Cow position:chr3:19112085-19111765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):182, 159

               
               
               Conread position:627-929
               
               
               Cow position:chr3:44504656-44504347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:628-790
               
               
               Cow position:chr3:51848166-51848328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:628-893
               
               
               Cow position:chr3:67450747-67451010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):216, 60

               
               
               Conread position:633-946
               
               
               Cow position:chr3:27689369-27689684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):196, 152

               
               
               Conread position:671-946
               
               
               Cow position:chr3:29801737-29802023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 210

               
               
               Conread position:676-945
               
               
               Cow position:chr3:18195498-18195761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):150, 23

               
               
               Conread position:1-271
               
               
               Cow position:chr4:39234850-39234569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 60

               
               
               Conread position:1-434
               
               
               Cow position:chr4:54636513-54636089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:1-462
               
               
               Cow position:chr4:58456638-58456164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:2-410
               
               
               Cow position:chr4:41977608-41977194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:267
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:2-475
               
               
               Cow position:chr4:16061309-16061807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:326
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:6-535
               
               
               Cow position:chr4:25348444-25348980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:353
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 159

               
               
               Conread position:8-359
               
               
               Cow position:chr4:35306770-35306416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-360
               
               
               Cow position:chr4:17923922-17923557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-391
               
               
               Cow position:chr4:59476522-59476909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):133, 52

               
               
               Conread position:8-393
               
               
               Cow position:chr4:6488330-6487935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:8-397
               
               
               Cow position:chr4:41473804-41473403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-406
               
               
               Cow position:chr4:45765880-45765460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:8-410
               
               
               Cow position:chr4:2350683-2350265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:8-411
               
               
               Cow position:chr4:531917-532329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-411
               
               
               Cow position:chr4:21573803-21574214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-411
               
               
               Cow position:chr4:27335971-27336398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-411
               
               
               Cow position:chr4:58622492-58622073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-431
               
               
               Cow position:chr4:58812520-58812960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-458
               
               
               Cow position:chr4:16640648-16641121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-458
               
               
               Cow position:chr4:28175045-28174581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):75, 51

               
               
               Conread position:8-464
               
               
               Cow position:chr4:3355926-3355445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:8-501
               
               
               Cow position:chr4:61985260-61984748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:318
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:8-783
               
               
               Cow position:chr4:50871529-50870724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:8-828
               
               
               Cow position:chr4:63000178-63001032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:871
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-843
               
               
               Cow position:chr4:61241321-61242197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:885
               
               
               Alignm identity:546
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):100, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr4:3127855-3128769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr4:4418085-4419000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:594
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr4:67382326-67383235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:923
               
               
               Alignm identity:567
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:8-883
               
               
               Cow position:chr4:32214213-32215111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:922
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr4:605657-606570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:580
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr4:1928585-1927670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr4:6267179-6266249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr4:18336913-18335985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:581
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr4:40216876-40217803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:8-893
               
               
               Cow position:chr4:41956800-41957726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 226

               
               
               Conread position:8-893
               
               
               Cow position:chr4:41960936-41961861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:596
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 235

               
               
               Conread position:8-921
               
               
               Cow position:chr4:25597449-25596491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:968
               
               
               Alignm identity:590
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:10-883
               
               
               Cow position:chr4:29605438-29604517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 26

               
               
               Conread position:11-595
               
               
               Cow position:chr4:29033019-29033593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:373
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:11-893
               
               
               Cow position:chr4:54811824-54810882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:950
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:15-243
               
               
               Cow position:chr4:18326997-18327234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:15-306
               
               
               Cow position:chr4:39933412-39933707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 48

               
               
               Conread position:15-555
               
               
               Cow position:chr4:12606835-12606283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:347
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:15-881
               
               
               Cow position:chr4:43317607-43316695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:924
               
               
               Alignm identity:570
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:16-410
               
               
               Cow position:chr4:18815554-18815148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:16-881
               
               
               Cow position:chr4:357936-358839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:921
               
               
               Alignm identity:564
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):108, 37

               
               
               Conread position:18-411
               
               
               Cow position:chr4:50807503-50807907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):117, 39

               
               
               Conread position:23-396
               
               
               Cow position:chr4:57986068-57986457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:29-465
               
               
               Cow position:chr4:10542391-10541929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:37-410
               
               
               Cow position:chr4:17539942-17539549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:37-885
               
               
               Cow position:chr4:1048189-1047305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:903
               
               
               Alignm identity:555
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:38-881
               
               
               Cow position:chr4:4378460-4379338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:895
               
               
               Alignm identity:548
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:46-407
               
               
               Cow position:chr4:60774654-60775017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):89, 24

               
               
               Conread position:77-359
               
               
               Cow position:chr4:59455215-59454933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:88-787
               
               
               Cow position:chr4:13463926-13464667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:460
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 296

               
               
               Conread position:135-714
               
               
               Cow position:chr4:51606609-51606003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:390
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:135-757
               
               
               Cow position:chr4:62558400-62557743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:409
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:135-843
               
               
               Cow position:chr4:38931537-38932273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:467
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):72, 166

               
               
               Conread position:146-764
               
               
               Cow position:chr4:30577906-30578559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:408
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:153-541
               
               
               Cow position:chr4:18330817-18330419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):55, 152

               
               
               Conread position:160-885
               
               
               Cow position:chr4:44779001-44778233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:472
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:160-893
               
               
               Cow position:chr4:47056235-47055461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:491
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 218

               
               
               Conread position:167-786
               
               
               Cow position:chr4:17834655-17833993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:418
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:177-562
               
               
               Cow position:chr4:51958834-51959215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:179-930
               
               
               Cow position:chr4:453001-453749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:487
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):21, 174

               
               
               Conread position:190-868
               
               
               Cow position:chr4:6613922-6613220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:467
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:208-828
               
               
               Cow position:chr4:49768516-49769157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:421
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:257-472
               
               
               Cow position:chr4:49825004-49825235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 6

               
               
               Conread position:258-925
               
               
               Cow position:chr4:29531162-29530458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:449
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:503-930
               
               
               Cow position:chr4:49533132-49533572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:297
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:565-930
               
               
               Cow position:chr4:42400364-42399979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 160

               
               
               Conread position:571-841
               
               
               Cow position:chr4:27873579-27873310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):206, 24

               
               
               Conread position:595-945
               
               
               Cow position:chr4:44774177-44774535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):27, 115

               
               
               Conread position:600-894
               
               
               Cow position:chr4:8818444-8818733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:618-930
               
               
               Cow position:chr4:384357-384661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):114, 16

               
               
               Conread position:618-936
               
               
               Cow position:chr4:49419369-49419047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):172, 25

               
               
               Conread position:622-881
               
               
               Cow position:chr4:38909200-38909454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):95, 142

               
               
               Conread position:622-881
               
               
               Cow position:chr4:57987434-57987699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):195, 238

               
               
               Conread position:622-929
               
               
               Cow position:chr4:18813520-18813207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):195, 254

               
               
               Conread position:622-930
               
               
               Cow position:chr4:45654482-45654168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):137, 142

               
               
               Conread position:622-945
               
               
               Cow position:chr4:26673271-26672949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:624-946
               
               
               Cow position:chr4:46456756-46457078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):175, 22

               
               
               Conread position:626-894
               
               
               Cow position:chr4:185841-186109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):176, 187

               
               
               Conread position:643-943
               
               
               Cow position:chr4:43226382-43226683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):186, 87

               
               
               Conread position:643-945
               
               
               Cow position:chr4:43692440-43692144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):147, 87

               
               
               Conread position:666-946
               
               
               Cow position:chr4:25984420-25984705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:676-925
               
               
               Cow position:chr4:47797842-47798097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):120, 57

               
               
               Conread position:1-400
               
               
               Cow position:chr5:72739536-72739131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:1-552
               
               
               Cow position:chr5:11418910-11418362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:359
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:2-410
               
               
               Cow position:chr5:48226442-48226022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:2-465
               
               
               Cow position:chr5:23668023-23667533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:317
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):85, 61

               
               
               Conread position:2-536
               
               
               Cow position:chr5:52612233-52611708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:340
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:2-783
               
               
               Cow position:chr5:42043045-42043844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:494
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:2-896
               
               
               Cow position:chr5:38661461-38662400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:948
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:3-475
               
               
               Cow position:chr5:71622171-71621673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:335
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):29, 33

               
               
               Conread position:5-896
               
               
               Cow position:chr5:46736147-46735208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:952
               
               
               Alignm identity:595
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:6-943
               
               
               Cow position:chr5:63091664-63092620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:978
               
               
               Alignm identity:573
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:8-297
               
               
               Cow position:chr5:58244684-58244386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:8-319
               
               
               Cow position:chr5:34583770-34584094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-320
               
               
               Cow position:chr5:12730576-12730251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-335
               
               
               Cow position:chr5:6152755-6152417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:8-339
               
               
               Cow position:chr5:11922992-11922648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-359
               
               
               Cow position:chr5:29031407-29031771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-410
               
               
               Cow position:chr5:50605201-50604780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-410
               
               
               Cow position:chr5:73486787-73486371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-465
               
               
               Cow position:chr5:10097900-10097436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):78, 46

               
               
               Conread position:8-475
               
               
               Cow position:chr5:46003503-46003023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-524
               
               
               Cow position:chr5:50390970-50390442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:324
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-555
               
               
               Cow position:chr5:10514140-10513579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:380
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-783
               
               
               Cow position:chr5:27196946-27196128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-788
               
               
               Cow position:chr5:18120339-18119522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:829
               
               
               Alignm identity:518
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-788
               
               
               Cow position:chr5:64779870-64779051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:512
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-836
               
               
               Cow position:chr5:44710246-44709375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:877
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr5:3788361-3789282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr5:10920981-10921899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:569
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr5:31121065-31120152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:558
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):140, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr5:49222362-49221439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-883
               
               
               Cow position:chr5:26077066-26076144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-883
               
               
               Cow position:chr5:42506896-42507815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:565
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-885
               
               
               Cow position:chr5:5925827-5924909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr5:5105362-5106289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:596
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr5:6586324-6585388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:948
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr5:23958190-23957261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr5:45180956-45180022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr5:51167165-51166244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 48

               
               
               Conread position:8-893
               
               
               Cow position:chr5:59145507-59146443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:595
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-921
               
               
               Cow position:chr5:51745367-51746318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:974
               
               
               Alignm identity:601
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:9-475
               
               
               Cow position:chr5:20567640-20568107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:9-926
               
               
               Cow position:chr5:48545509-48546432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:961
               
               
               Alignm identity:596
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:11-359
               
               
               Cow position:chr5:58190617-58190257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:11-397
               
               
               Cow position:chr5:46791988-46792390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:14-400
               
               
               Cow position:chr5:53943977-53944373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:15-297
               
               
               Cow position:chr5:46666148-46666443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:15-409
               
               
               Cow position:chr5:25902319-25901918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:15-410
               
               
               Cow position:chr5:49131351-49131758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 50

               
               
               Conread position:15-464
               
               
               Cow position:chr5:47341865-47342329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):106, 141

               
               
               Conread position:15-881
               
               
               Cow position:chr5:18249201-18250107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:918
               
               
               Alignm identity:568
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:16-415
               
               
               Cow position:chr5:27550318-27549902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:17-357
               
               
               Cow position:chr5:26569591-26569234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:17-871
               
               
               Cow position:chr5:60733980-60734825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:890
               
               
               Alignm identity:558
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:19-560
               
               
               Cow position:chr5:72397334-72397882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:354
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):195, 23

               
               
               Conread position:23-893
               
               
               Cow position:chr5:18559248-18558337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:578
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:26-817
               
               
               Cow position:chr5:32364939-32365713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:498
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:38-921
               
               
               Cow position:chr5:54786944-54786014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:584
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:39-848
               
               
               Cow position:chr5:59278311-59279157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:858
               
               
               Alignm identity:524
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:60-411
               
               
               Cow position:chr5:58142051-58141690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 10

               
               
               Conread position:69-893
               
               
               Cow position:chr5:30156552-30157425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:881
               
               
               Alignm identity:546
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):18, 316

               
               
               Conread position:70-783
               
               
               Cow position:chr5:68585106-68585824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:455
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:135-938
               
               
               Cow position:chr5:37734638-37735487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:858
               
               
               Alignm identity:533
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 161

               
               
               Conread position:149-410
               
               
               Cow position:chr5:32955383-32955114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:149-930
               
               
               Cow position:chr5:55833562-55832731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:845
               
               
               Alignm identity:537
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:160-842
               
               
               Cow position:chr5:57337117-57336400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:441
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:161-411
               
               
               Cow position:chr5:50688105-50688365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 217

               
               
               Conread position:168-893
               
               
               Cow position:chr5:444010-443244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:484
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 209

               
               
               Conread position:175-893
               
               
               Cow position:chr5:46778828-46779581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:481
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:192-474
               
               
               Cow position:chr5:32775136-32775439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:194-788
               
               
               Cow position:chr5:29673579-29674178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:400
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 116

               
               
               Conread position:202-879
               
               
               Cow position:chr5:52823871-52823155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:460
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 174

               
               
               Conread position:218-936
               
               
               Cow position:chr5:56960917-56961668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:470
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:231-541
               
               
               Cow position:chr5:20553054-20552732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):155, 24

               
               
               Conread position:241-541
               
               
               Cow position:chr5:21118207-21118490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):207, 145

               
               
               Conread position:278-730
               
               
               Cow position:chr5:74475668-74476133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:300
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 179

               
               
               Conread position:284-555
               
               
               Cow position:chr5:68256116-68255844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):94, 196

               
               
               Conread position:309-926
               
               
               Cow position:chr5:42003127-42003734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:387
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 66

               
               
               Conread position:311-886
               
               
               Cow position:chr5:48025727-48026329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:381
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 170

               
               
               Conread position:400-929
               
               
               Cow position:chr5:7068246-7068786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:346
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:425-941
               
               
               Cow position:chr5:27481842-27482359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:345
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:550-911
               
               
               Cow position:chr5:22830038-22829676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:564-881
               
               
               Cow position:chr5:28569379-28569699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 121

               
               
               Conread position:568-881
               
               
               Cow position:chr5:51942381-51942703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):5, 30

               
               
               Conread position:568-881
               
               
               Cow position:chr5:51947334-51947656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):5, 30

               
               
               Conread position:588-933
               
               
               Cow position:chr5:51068965-51069313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:595-933
               
               
               Cow position:chr5:41229288-41228941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 92

               
               
               Conread position:618-941
               
               
               Cow position:chr5:24239899-24240223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):134, 87

               
               
               Conread position:628-945
               
               
               Cow position:chr5:14728322-14727994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:628-945
               
               
               Cow position:chr5:41738472-41738782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):201, 24

               
               
               Conread position:656-946
               
               
               Cow position:chr5:50166342-50166632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:679-922
               
               
               Cow position:chr5:70645333-70645081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:702-946
               
               
               Cow position:chr5:44272579-44272819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:1-151
               
               
               Cow position:chr6:59017040-59016887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:1-941
               
               
               Cow position:chr6:7161084-7162017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:971
               
               
               Alignm identity:594
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):134, 55

               
               
               Conread position:2-384
               
               
               Cow position:chr6:66547727-66548121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 61

               
               
               Conread position:3-340
               
               
               Cow position:chr6:60391305-60390968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 153

               
               
               Conread position:7-407
               
               
               Cow position:chr6:51910358-51910761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:8-259
               
               
               Cow position:chr6:67552757-67553015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-322
               
               
               Cow position:chr6:704489-704817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):72, 167

               
               
               Conread position:8-347
               
               
               Cow position:chr6:30272615-30272263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-366
               
               
               Cow position:chr6:51091636-51092014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-375
               
               
               Cow position:chr6:2556920-2557304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-409
               
               
               Cow position:chr6:40864753-40864344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:8-410
               
               
               Cow position:chr6:50486522-50486104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-410
               
               
               Cow position:chr6:51716818-51717236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 149

               
               
               Conread position:8-410
               
               
               Cow position:chr6:55539997-55539579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:8-410
               
               
               Cow position:chr6:64718595-64719011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-411
               
               
               Cow position:chr6:13849350-13849764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-411
               
               
               Cow position:chr6:18513830-18514228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-464
               
               
               Cow position:chr6:25216578-25217053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-475
               
               
               Cow position:chr6:18913202-18912709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-537
               
               
               Cow position:chr6:14133470-14132926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:368
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-537
               
               
               Cow position:chr6:46296547-46297090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:367
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-540
               
               
               Cow position:chr6:39435647-39435095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:362
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-590
               
               
               Cow position:chr6:2376982-2377573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:392
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:8-620
               
               
               Cow position:chr6:1796391-1795750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-743
               
               
               Cow position:chr6:35874436-35873665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:483
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 62

               
               
               Conread position:8-842
               
               
               Cow position:chr6:62577909-62577030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:887
               
               
               Alignm identity:551
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-868
               
               
               Cow position:chr6:37386857-37387759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:917
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-879
               
               
               Cow position:chr6:34128735-34129648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:924
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr6:1535975-1536898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:574
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 165

               
               
               Conread position:8-881
               
               
               Cow position:chr6:3151506-3152411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:572
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:8-881
               
               
               Cow position:chr6:24241563-24242482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:576
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr6:28186561-28185673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:904
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-885
               
               
               Cow position:chr6:11870655-11869736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-885
               
               
               Cow position:chr6:51732357-51733279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:574
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr6:329083-328159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr6:1508229-1507306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr6:7139059-7138137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr6:10043491-10044419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr6:11018934-11019861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr6:16051016-16050089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr6:20351817-20350885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:950
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr6:28064270-28065196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr6:43620004-43620935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:946
               
               
               Alignm identity:609
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr6:55237967-55238894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr6:60378435-60379367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-921
               
               
               Cow position:chr6:3486122-3485186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:959
               
               
               Alignm identity:588
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr6:3887234-3886272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:969
               
               
               Alignm identity:585
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):79, 68

               
               
               Conread position:8-921
               
               
               Cow position:chr6:25791423-25790468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:969
               
               
               Alignm identity:602
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-929
               
               
               Cow position:chr6:11722922-11721966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:976
               
               
               Alignm identity:608
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:8-930
               
               
               Cow position:chr6:2580695-2581643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:967
               
               
               Alignm identity:589
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:8-933
               
               
               Cow position:chr6:39911600-39912568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:981
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:11-472
               
               
               Cow position:chr6:28702430-28701947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-883
               
               
               Cow position:chr6:27152165-27151245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chr6:40277350-40278263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:568
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chr6:62664059-62664979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:578
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chr6:68029455-68030383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:13-411
               
               
               Cow position:chr6:39349670-39350084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):19, 23

               
               
               Conread position:14-555
               
               
               Cow position:chr6:13979041-13979596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:366
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):18, 22

               
               
               Conread position:14-881
               
               
               Cow position:chr6:17596007-17595092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:924
               
               
               Alignm identity:571
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):73, 54

               
               
               Conread position:14-881
               
               
               Cow position:chr6:50720394-50721289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:915
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 143

               
               
               Conread position:14-893
               
               
               Cow position:chr6:12664035-12663111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:14-893
               
               
               Cow position:chr6:19104629-19103704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:600
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 22

               
               
               Conread position:15-400
               
               
               Cow position:chr6:15278273-15277868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:15-465
               
               
               Cow position:chr6:3573065-3573525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:304
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:15-544
               
               
               Cow position:chr6:3263414-3262882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:334
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:15-881
               
               
               Cow position:chr6:36530570-36531466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:577
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:15-921
               
               
               Cow position:chr6:50570487-50571424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:960
               
               
               Alignm identity:595
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):109, 52

               
               
               Conread position:15-933
               
               
               Cow position:chr6:15138886-15137927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:982
               
               
               Alignm identity:611
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:15-946
               
               
               Cow position:chr6:32417791-32418769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:996
               
               
               Alignm identity:619
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):113, 48

               
               
               Conread position:16-946
               
               
               Cow position:chr6:7941494-7940530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:992
               
               
               Alignm identity:605
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:17-447
               
               
               Cow position:chr6:5750216-5750668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:19-410
               
               
               Cow position:chr6:617448-617847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:20-886
               
               
               Cow position:chr6:1574822-1575709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:577
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 7

               
               
               Conread position:23-464
               
               
               Cow position:chr6:28400957-28400497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:305
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:23-475
               
               
               Cow position:chr6:28135226-28135699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 10

               
               
               Conread position:60-788
               
               
               Cow position:chr6:41390128-41389361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:474
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:62-880
               
               
               Cow position:chr6:65820256-65819388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:874
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 481

               
               
               Conread position:81-735
               
               
               Cow position:chr6:28002035-28001334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:432
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:86-411
               
               
               Cow position:chr6:31813646-31813306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 297

               
               
               Conread position:131-828
               
               
               Cow position:chr6:45590948-45591682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:478
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 249

               
               
               Conread position:135-475
               
               
               Cow position:chr6:12971515-12971152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 246

               
               
               Conread position:149-388
               
               
               Cow position:chr6:61210235-61210470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:158-943
               
               
               Cow position:chr6:37385583-37386401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:503
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:160-900
               
               
               Cow position:chr6:22738267-22737495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:480
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 359

               
               
               Conread position:190-893
               
               
               Cow position:chr6:2876571-2875830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:468
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:201-555
               
               
               Cow position:chr6:19530228-19530582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 46

               
               
               Conread position:207-893
               
               
               Cow position:chr6:26668545-26667820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:456
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):25, 330

               
               
               Conread position:230-592
               
               
               Cow position:chr6:31010310-31009937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):151, 18

               
               
               Conread position:248-561
               
               
               Cow position:chr6:16695714-16696031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 139

               
               
               Conread position:255-942
               
               
               Cow position:chr6:9047898-9047235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:444
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:494-945
               
               
               Cow position:chr6:47526048-47526520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:312
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:618-926
               
               
               Cow position:chr6:32658602-32658297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):155, 118

               
               
               Conread position:618-937
               
               
               Cow position:chr6:15154035-15154359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):172, 145

               
               
               Conread position:619-943
               
               
               Cow position:chr6:24045748-24045425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 123

               
               
               Conread position:621-946
               
               
               Cow position:chr6:30077354-30077025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:622-933
               
               
               Cow position:chr6:618345-618658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):207, 145

               
               
               Conread position:622-941
               
               
               Cow position:chr6:59240014-59240328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:622-946
               
               
               Cow position:chr6:62852512-62852826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):215, 141

               
               
               Conread position:626-945
               
               
               Cow position:chr6:37866233-37866545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):176, 54

               
               
               Conread position:677-914
               
               
               Cow position:chr6:7921053-7920811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):140, 205

               
               
               Conread position:2-400
               
               
               Cow position:chr7:54697656-54698063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:2-406
               
               
               Cow position:chr7:52802237-52801820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):79, 316

               
               
               Conread position:2-410
               
               
               Cow position:chr7:43280245-43280666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:2-787
               
               
               Cow position:chr7:7276767-7277595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:514
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:2-893
               
               
               Cow position:chr7:21241375-21240465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:574
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:2-893
               
               
               Cow position:chr7:45169897-45170830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:596
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:8-251
               
               
               Cow position:chr7:33403516-33403264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:8-294
               
               
               Cow position:chr7:22346119-22346416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 49

               
               
               Conread position:8-297
               
               
               Cow position:chr7:20558148-20558449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-360
               
               
               Cow position:chr7:22717752-22717395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:8-363
               
               
               Cow position:chr7:15557160-15556798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 60

               
               
               Conread position:8-400
               
               
               Cow position:chr7:4558720-4558309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:8-400
               
               
               Cow position:chr7:34415986-34415582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-400
               
               
               Cow position:chr7:55040114-55039706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-410
               
               
               Cow position:chr7:3122246-3122660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 60

               
               
               Conread position:8-411
               
               
               Cow position:chr7:547219-547621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-457
               
               
               Cow position:chr7:21232637-21232177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:290
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-485
               
               
               Cow position:chr7:1177171-1177665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 163

               
               
               Conread position:8-544
               
               
               Cow position:chr7:65871136-65870589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:350
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:8-555
               
               
               Cow position:chr7:8337746-8338304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:365
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-788
               
               
               Cow position:chr7:29472821-29473631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:516
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:8-831
               
               
               Cow position:chr7:60465084-60465944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:870
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-868
               
               
               Cow position:chr7:21989001-21989907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:916
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:8-881
               
               
               Cow position:chr7:443893-442976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr7:1368315-1367410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:923
               
               
               Alignm identity:571
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr7:20797087-20796186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:920
               
               
               Alignm identity:570
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):79, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr7:34488283-34489191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:574
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr7:47191371-47190458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:934
               
               
               Alignm identity:588
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:8-892
               
               
               Cow position:chr7:49604205-49603276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:583
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr7:13545-12616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:582
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr7:6627009-6626077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:951
               
               
               Alignm identity:603
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr7:6665865-6666796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:594
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr7:6722397-6723329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:944
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr7:7260888-7261814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:944
               
               
               Alignm identity:587
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr7:11461764-11460841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr7:20151348-20150433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr7:26927808-26926881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr7:37165234-37166157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr7:46265532-46266463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr7:65558051-65557122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr7:65813202-65814134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:594
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-899
               
               
               Cow position:chr7:195534-194602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:946
               
               
               Alignm identity:577
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr7:13531538-13530581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:967
               
               
               Alignm identity:585
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-941
               
               
               Cow position:chr7:1596624-1595649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:986
               
               
               Alignm identity:623
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 203

               
               
               Conread position:9-385
               
               
               Cow position:chr7:65512521-65512151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:11-400
               
               
               Cow position:chr7:48637092-48637487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:11-893
               
               
               Cow position:chr7:27099903-27098975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 65

               
               
               Conread position:14-881
               
               
               Cow position:chr7:25442148-25443058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:922
               
               
               Alignm identity:567
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:15-379
               
               
               Cow position:chr7:24671839-24672204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:15-397
               
               
               Cow position:chr7:57376054-57375666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:15-415
               
               
               Cow position:chr7:13779268-13779669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:15-783
               
               
               Cow position:chr7:33066332-33065549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:491
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):109, 48

               
               
               Conread position:15-885
               
               
               Cow position:chr7:5305608-5304696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:927
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:16-378
               
               
               Cow position:chr7:68853592-68853222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:16-400
               
               
               Cow position:chr7:54510816-54510427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:16-406
               
               
               Cow position:chr7:34211535-34211939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:16-410
               
               
               Cow position:chr7:8142596-8142191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:17-893
               
               
               Cow position:chr7:1332040-1331118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:601
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:23-881
               
               
               Cow position:chr7:46748366-46749270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:912
               
               
               Alignm identity:558
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:23-893
               
               
               Cow position:chr7:21424986-21424072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:24-407
               
               
               Cow position:chr7:27711786-27712177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:24-461
               
               
               Cow position:chr7:20368737-20368279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):107, 52

               
               
               Conread position:24-881
               
               
               Cow position:chr7:59773695-59774596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:910
               
               
               Alignm identity:557
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:25-406
               
               
               Cow position:chr7:33808960-33809353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 78

               
               
               Conread position:25-410
               
               
               Cow position:chr7:34414671-34414273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:25-783
               
               
               Cow position:chr7:59458109-59458894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:808
               
               
               Alignm identity:507
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:25-922
               
               
               Cow position:chr7:24806106-24805166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:957
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:30-832
               
               
               Cow position:chr7:24250744-24251557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:845
               
               
               Alignm identity:519
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:46-893
               
               
               Cow position:chr7:1442433-1441540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:906
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 432

               
               
               Conread position:70-757
               
               
               Cow position:chr7:52763216-52762493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:445
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 244

               
               
               Conread position:86-475
               
               
               Cow position:chr7:54692871-54693285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):38, 297

               
               
               Conread position:119-464
               
               
               Cow position:chr7:46194775-46194409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:135-883
               
               
               Cow position:chr7:36344282-36343496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:501
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:158-476
               
               
               Cow position:chr7:2410190-2410522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:160-555
               
               
               Cow position:chr7:67586336-67585944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:179-783
               
               
               Cow position:chr7:58441105-58441730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:398
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:190-881
               
               
               Cow position:chr7:20776349-20777031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:437
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 305

               
               
               Conread position:226-445
               
               
               Cow position:chr7:26023433-26023666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:244-929
               
               
               Cow position:chr7:44499600-44498912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:439
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 140

               
               
               Conread position:270-883
               
               
               Cow position:chr7:69366-69997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:405
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):113, 177

               
               
               Conread position:344-698
               
               
               Cow position:chr7:3325983-3325631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:436-903
               
               
               Cow position:chr7:44524410-44523921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:308
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):18, 284

               
               
               Conread position:468-804
               
               
               Cow position:chr7:46192315-46192669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:488-946
               
               
               Cow position:chr7:37180087-37180535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-946
               
               
               Cow position:chr7:30716604-30716253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):226, 31

               
               
               Conread position:595-942
               
               
               Cow position:chr7:23913225-23913581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 227

               
               
               Conread position:595-945
               
               
               Cow position:chr7:34664589-34664941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:618-934
               
               
               Cow position:chr7:55964421-55964741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):169, 42

               
               
               Conread position:618-943
               
               
               Cow position:chr7:4557758-4557435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 47

               
               
               Conread position:621-843
               
               
               Cow position:chr7:30043003-30043227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):106, 193

               
               
               Conread position:621-926
               
               
               Cow position:chr7:13779876-13780186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:622-941
               
               
               Cow position:chr7:42505069-42505387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 165

               
               
               Conread position:623-946
               
               
               Cow position:chr7:66274088-66273760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:626-920
               
               
               Cow position:chr7:1549488-1549191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 110

               
               
               Conread position:626-942
               
               
               Cow position:chr7:48105054-48105373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):200, 159

               
               
               Conread position:628-789
               
               
               Cow position:chr7:27233452-27233612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:628-921
               
               
               Cow position:chr7:67802356-67802653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):100, 109

               
               
               Conread position:643-943
               
               
               Cow position:chr7:34822188-34821892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):184, 150

               
               
               Conread position:656-925
               
               
               Cow position:chr7:5149601-5149334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 25

               
               
               Conread position:666-941
               
               
               Cow position:chr7:265231-265513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 147

               
               
               Conread position:679-945
               
               
               Cow position:chr7:6207667-6207939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):150, 196

               
               
               Conread position:1-842
               
               
               Cow position:chr8:1569664-1570551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:896
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 35

               
               
               Conread position:2-262
               
               
               Cow position:chr8:2234192-2233927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:5-233
               
               
               Cow position:chr8:36633965-36633731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:5-352
               
               
               Cow position:chr8:29032316-29031962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):119, 63

               
               
               Conread position:5-592
               
               
               Cow position:chr8:56751948-56752537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:349
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):6, 67

               
               
               Conread position:6-447
               
               
               Cow position:chr8:46716291-46715849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):265, 48

               
               
               Conread position:8-244
               
               
               Cow position:chr8:36333761-36333519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-353
               
               
               Cow position:chr8:32317034-32316676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 156

               
               
               Conread position:8-400
               
               
               Cow position:chr8:17382561-17382155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-410
               
               
               Cow position:chr8:44241136-44240723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:8-410
               
               
               Cow position:chr8:58855238-58855649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-411
               
               
               Cow position:chr8:29629062-29628643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-464
               
               
               Cow position:chr8:6062919-6062470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:315
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-464
               
               
               Cow position:chr8:38393183-38393665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:317
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:8-475
               
               
               Cow position:chr8:21154794-21154305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):69, 241

               
               
               Conread position:8-475
               
               
               Cow position:chr8:30490377-30489884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:324
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-492
               
               
               Cow position:chr8:42153748-42153249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-555
               
               
               Cow position:chr8:6465427-6465987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:372
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-739
               
               
               Cow position:chr8:42486462-42487231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:473
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:8-766
               
               
               Cow position:chr8:26877796-26878608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:819
               
               
               Alignm identity:518
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-766
               
               
               Cow position:chr8:32435293-32434499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:511
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:8-842
               
               
               Cow position:chr8:32629457-32628583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:893
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-868
               
               
               Cow position:chr8:18403777-18402871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:916
               
               
               Alignm identity:556
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:8-881
               
               
               Cow position:chr8:53837498-53838401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:922
               
               
               Alignm identity:566
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-885
               
               
               Cow position:chr8:9738087-9738995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:570
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr8:1467676-1468606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:584
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 148

               
               
               Conread position:8-893
               
               
               Cow position:chr8:8515533-8514597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr8:10750897-10751828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:945
               
               
               Alignm identity:603
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 55

               
               
               Conread position:8-893
               
               
               Cow position:chr8:14630679-14629747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr8:15223360-15224282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr8:21091783-21090851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr8:21251794-21252720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr8:42318719-42317789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:600
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr8:50431594-50430662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:950
               
               
               Alignm identity:595
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr8:55271977-55271048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-918
               
               
               Cow position:chr8:39358595-39359507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:8-921
               
               
               Cow position:chr8:5019562-5020515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:966
               
               
               Alignm identity:592
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-921
               
               
               Cow position:chr8:25774090-25773132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:969
               
               
               Alignm identity:585
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 61

               
               
               Conread position:8-921
               
               
               Cow position:chr8:49285512-49284564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:963
               
               
               Alignm identity:590
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:9-945
               
               
               Cow position:chr8:23597481-23598425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:977
               
               
               Alignm identity:604
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):73, 50

               
               
               Conread position:11-464
               
               
               Cow position:chr8:30156660-30157134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):58, 68

               
               
               Conread position:11-475
               
               
               Cow position:chr8:3955598-3956081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:317
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:14-893
               
               
               Cow position:chr8:6203724-6202807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 22

               
               
               Conread position:15-380
               
               
               Cow position:chr8:29620657-29620284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:15-407
               
               
               Cow position:chr8:55084308-55084701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:15-410
               
               
               Cow position:chr8:3854473-3854068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:15-473
               
               
               Cow position:chr8:55087097-55087584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:15-541
               
               
               Cow position:chr8:58318298-58318835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:367
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:15-562
               
               
               Cow position:chr8:46048886-46049442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:362
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:15-843
               
               
               Cow position:chr8:8103749-8102872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:890
               
               
               Alignm identity:545
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):70, 388

               
               
               Conread position:15-843
               
               
               Cow position:chr8:11835089-11835959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:878
               
               
               Alignm identity:528
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:15-935
               
               
               Cow position:chr8:47659764-47658807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:977
               
               
               Alignm identity:610
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:16-407
               
               
               Cow position:chr8:38044571-38044166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:24-755
               
               
               Cow position:chr8:53821465-53820730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:465
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):98, 39

               
               
               Conread position:24-765
               
               
               Cow position:chr8:3333593-3334381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:487
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:35-788
               
               
               Cow position:chr8:1109774-1110552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:500
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:35-893
               
               
               Cow position:chr8:1346380-1345491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:909
               
               
               Alignm identity:566
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:35-946
               
               
               Cow position:chr8:46118369-46119302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:960
               
               
               Alignm identity:586
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:36-671
               
               
               Cow position:chr8:37267126-37267754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:419
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):39, 121

               
               
               Conread position:37-881
               
               
               Cow position:chr8:8913303-8914194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:908
               
               
               Alignm identity:571
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:37-922
               
               
               Cow position:chr8:50928523-50927594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:562
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:39-893
               
               
               Cow position:chr8:1321601-1322499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:907
               
               
               Alignm identity:551
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:42-562
               
               
               Cow position:chr8:19443573-19444089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:337
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:46-411
               
               
               Cow position:chr8:1501690-1501315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:46-893
               
               
               Cow position:chr8:1151690-1150813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:895
               
               
               Alignm identity:548
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:56-475
               
               
               Cow position:chr8:14581399-14580975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:70-752
               
               
               Cow position:chr8:6183166-6182473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:439
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:134-416
               
               
               Cow position:chr8:33691675-33691960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:135-464
               
               
               Cow position:chr8:1431230-1431581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 245

               
               
               Conread position:160-411
               
               
               Cow position:chr8:1016867-1017128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 218

               
               
               Conread position:178-945
               
               
               Cow position:chr8:22155334-22154540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:489
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):199, 7

               
               
               Conread position:179-843
               
               
               Cow position:chr8:21153570-21152870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:432
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 262

               
               
               Conread position:189-475
               
               
               Cow position:chr8:21042474-21042780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 189

               
               
               Conread position:208-555
               
               
               Cow position:chr8:38038898-38038550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 273

               
               
               Conread position:229-926
               
               
               Cow position:chr8:31570001-31569277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:464
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:240-836
               
               
               Cow position:chr8:19576485-19577090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:406
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:311-933
               
               
               Cow position:chr8:51674016-51674669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:395
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 222

               
               
               Conread position:317-942
               
               
               Cow position:chr8:26485293-26484634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:426
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 164

               
               
               Conread position:327-946
               
               
               Cow position:chr8:4901782-4902438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:420
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 223

               
               
               Conread position:349-791
               
               
               Cow position:chr8:38895135-38895579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:349-881
               
               
               Cow position:chr8:29037835-29038390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:372
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 12

               
               
               Conread position:486-941
               
               
               Cow position:chr8:6377813-6377349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:601-941
               
               
               Cow position:chr8:40415292-40415634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:619-900
               
               
               Cow position:chr8:35806774-35806487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):65, 119

               
               
               Conread position:621-943
               
               
               Cow position:chr8:60647789-60648113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:622-921
               
               
               Cow position:chr8:26013477-26013781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):195, 254

               
               
               Conread position:626-945
               
               
               Cow position:chr8:47652290-47651971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):191, 102

               
               
               Conread position:643-943
               
               
               Cow position:chr8:32498037-32497723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 141

               
               
               Conread position:644-945
               
               
               Cow position:chr8:37980549-37980852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:666-945
               
               
               Cow position:chr8:42589953-42590230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):151, 80

               
               
               Conread position:677-926
               
               
               Cow position:chr8:45057012-45056758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:687-920
               
               
               Cow position:chr8:35581405-35581169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):114, 98

               
               
               Conread position:707-926
               
               
               Cow position:chr8:4299979-4300193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:1-407
               
               
               Cow position:chr9:22474094-22473672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:2-475
               
               
               Cow position:chr9:12726645-12727125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:313
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:3-395
               
               
               Cow position:chr9:31060926-31061318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 51

               
               
               Conread position:3-556
               
               
               Cow position:chr9:11440483-11439925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:370
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:5-881
               
               
               Cow position:chr9:16177792-16178709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:8-272
               
               
               Cow position:chr9:47044172-47044448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-320
               
               
               Cow position:chr9:28680177-28680501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-334
               
               
               Cow position:chr9:6884531-6884871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-377
               
               
               Cow position:chr9:7004931-7005301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):147, 62

               
               
               Conread position:8-381
               
               
               Cow position:chr9:14039990-14039609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:8-404
               
               
               Cow position:chr9:43303017-43302606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:8-411
               
               
               Cow position:chr9:203086-202670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-411
               
               
               Cow position:chr9:26421771-26421355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-411
               
               
               Cow position:chr9:30828957-30829372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-457
               
               
               Cow position:chr9:34240897-34240423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:317
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:8-458
               
               
               Cow position:chr9:26738218-26738698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 68

               
               
               Conread position:8-475
               
               
               Cow position:chr9:37175006-37175499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:323
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-475
               
               
               Cow position:chr9:50326047-50326539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:327
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-501
               
               
               Cow position:chr9:7059861-7059338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:333
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-790
               
               
               Cow position:chr9:2213349-2214159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:519
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):116, 55

               
               
               Conread position:8-868
               
               
               Cow position:chr9:2680776-2681662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:903
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr9:27037313-27038229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:573
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:8-881
               
               
               Cow position:chr9:30674272-30675197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:573
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:8-881
               
               
               Cow position:chr9:38678337-38679240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:574
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 68

               
               
               Conread position:8-881
               
               
               Cow position:chr9:44203867-44202958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:923
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-881
               
               
               Cow position:chr9:47004943-47005864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:568
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-883
               
               
               Cow position:chr9:31809787-31810702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:925
               
               
               Alignm identity:568
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-893
               
               
               Cow position:chr9:778614-777680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:573
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr9:4941288-4940366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:583
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-893
               
               
               Cow position:chr9:45875721-45876651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chr9:48796091-48795159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:950
               
               
               Alignm identity:598
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr9:52525359-52526284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:942
               
               
               Alignm identity:595
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chr9:64013019-64012096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:584
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-920
               
               
               Cow position:chr9:18507622-18506663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:968
               
               
               Alignm identity:595
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-921
               
               
               Cow position:chr9:1063497-1062534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:972
               
               
               Alignm identity:598
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-921
               
               
               Cow position:chr9:5627018-5627981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:972
               
               
               Alignm identity:597
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr9:9015276-9016236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:970
               
               
               Alignm identity:605
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr9:10856220-10857182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:975
               
               
               Alignm identity:604
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-921
               
               
               Cow position:chr9:10938928-10939886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:972
               
               
               Alignm identity:594
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-924
               
               
               Cow position:chr9:19157078-19156127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:966
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:11-883
               
               
               Cow position:chr9:44167801-44168714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:924
               
               
               Alignm identity:571
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:12-893
               
               
               Cow position:chr9:14002248-14003170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:581
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:14-407
               
               
               Cow position:chr9:6921547-6921138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):18, 22

               
               
               Conread position:15-380
               
               
               Cow position:chr9:7019212-7019572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:15-381
               
               
               Cow position:chr9:17900358-17899991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 149

               
               
               Conread position:15-400
               
               
               Cow position:chr9:13118516-13118132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:15-410
               
               
               Cow position:chr9:61238731-61238322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 149

               
               
               Conread position:15-843
               
               
               Cow position:chr9:2288925-2288080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:863
               
               
               Alignm identity:493
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:15-881
               
               
               Cow position:chr9:32971586-32972489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:920
               
               
               Alignm identity:569
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:15-921
               
               
               Cow position:chr9:2526501-2527448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:962
               
               
               Alignm identity:598
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:15-921
               
               
               Cow position:chr9:5006188-5007135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:967
               
               
               Alignm identity:596
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):109, 65

               
               
               Conread position:15-930
               
               
               Cow position:chr9:59430726-59431673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:963
               
               
               Alignm identity:600
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:16-881
               
               
               Cow position:chr9:3545037-3545949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:579
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:17-893
               
               
               Cow position:chr9:1249783-1248863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:18-358
               
               
               Cow position:chr9:8656457-8656111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:18-473
               
               
               Cow position:chr9:9367217-9367669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:299
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:20-946
               
               
               Cow position:chr9:27487656-27486723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:955
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:22-945
               
               
               Cow position:chr9:50063714-50062750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:978
               
               
               Alignm identity:589
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:23-893
               
               
               Cow position:chr9:1072068-1071151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:931
               
               
               Alignm identity:579
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:24-359
               
               
               Cow position:chr9:28024028-28024375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):63, 52

               
               
               Conread position:35-415
               
               
               Cow position:chr9:1983047-1983438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:35-893
               
               
               Cow position:chr9:1098822-1099727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:914
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:35-946
               
               
               Cow position:chr9:24723013-24723943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:958
               
               
               Alignm identity:597
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:39-881
               
               
               Cow position:chr9:15053650-15052767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:896
               
               
               Alignm identity:551
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:56-464
               
               
               Cow position:chr9:27782641-27782207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:64-783
               
               
               Cow position:chr9:35157999-35157251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:465
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:70-881
               
               
               Cow position:chr9:18538927-18539784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:864
               
               
               Alignm identity:526
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:76-475
               
               
               Cow position:chr9:35544260-35543834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 309

               
               
               Conread position:88-893
               
               
               Cow position:chr9:31418221-31417383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:848
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 294

               
               
               Conread position:89-411
               
               
               Cow position:chr9:999748-1000085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 294

               
               
               Conread position:97-889
               
               
               Cow position:chr9:22655105-22655940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:851
               
               
               Alignm identity:528
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:131-540
               
               
               Cow position:chr9:50224000-50224414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:135-410
               
               
               Cow position:chr9:52514458-52514744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:146-714
               
               
               Cow position:chr9:3377643-3378207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:367
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):158, 11

               
               
               Conread position:160-881
               
               
               Cow position:chr9:2872841-2873596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:467
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:161-788
               
               
               Cow position:chr9:50002819-50003472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:418
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):47, 217

               
               
               Conread position:168-879
               
               
               Cow position:chr9:46668425-46667678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:478
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):40, 60

               
               
               Conread position:172-464
               
               
               Cow position:chr9:9312945-9312634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 5

               
               
               Conread position:175-881
               
               
               Cow position:chr9:6708544-6707796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:475
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:176-453
               
               
               Cow position:chr9:10110030-10110315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:202-537
               
               
               Cow position:chr9:46196001-46195685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:207-749
               
               
               Cow position:chr9:4579092-4578550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:368
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:285-786
               
               
               Cow position:chr9:54790456-54789951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:328
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:335-930
               
               
               Cow position:chr9:35022539-35023135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:388
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:529-873
               
               
               Cow position:chr9:45153597-45153953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:666-936
               
               
               Cow position:chr9:56910465-56910742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:676-862
               
               
               Cow position:chr9:23554296-23554490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):113, 176

               
               
               Conread position:691-945
               
               
               Cow position:chr9:27741206-27741470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:695-929
               
               
               Cow position:chr9:32985321-32985549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):197, 27

               
               
               Conread position:710-946
               
               
               Cow position:chr9:34250316-34250555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 38

               
               
               Conread position:1-376
               
               
               Cow position:chrX:22076824-22076439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:1-407
               
               
               Cow position:chrX:10754678-10755095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:1-410
               
               
               Cow position:chrX:24807443-24807029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):110, 67

               
               
               Conread position:1-420
               
               
               Cow position:chrX:10706828-10707240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):149, 86

               
               
               Conread position:1-930
               
               
               Cow position:chrX:26342080-26341130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:974
               
               
               Alignm identity:608
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 5

               
               
               Conread position:2-411
               
               
               Cow position:chrX:34093723-34093298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:2-893
               
               
               Cow position:chrX:15978848-15977912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:948
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:5-411
               
               
               Cow position:chrX:9127192-9127612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):27, 31

               
               
               Conread position:5-921
               
               
               Cow position:chrX:30230001-30229043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:973
               
               
               Alignm identity:608
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 71

               
               
               Conread position:8-322
               
               
               Cow position:chrX:13653416-13653724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:8-359
               
               
               Cow position:chrX:16406697-16407047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-400
               
               
               Cow position:chrX:2047204-2047603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-410
               
               
               Cow position:chrX:23453941-23453524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:8-411
               
               
               Cow position:chrX:24446098-24445679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-411
               
               
               Cow position:chrX:24730760-24731179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-411
               
               
               Cow position:chrX:30437017-30437436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-463
               
               
               Cow position:chrX:22126655-22126191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):116, 55

               
               
               Conread position:8-464
               
               
               Cow position:chrX:18899695-18899231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):125, 60

               
               
               Conread position:8-464
               
               
               Cow position:chrX:21225590-21226072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:313
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):74, 160

               
               
               Conread position:8-475
               
               
               Cow position:chrX:20741517-20741026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:318
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-492
               
               
               Cow position:chrX:23388437-23387926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-538
               
               
               Cow position:chrX:14217999-14217459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 151

               
               
               Conread position:8-552
               
               
               Cow position:chrX:12652378-12651809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:339
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-562
               
               
               Cow position:chrX:20512447-20511895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:354
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 55

               
               
               Conread position:8-731
               
               
               Cow position:chrX:30167962-30167205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:479
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-737
               
               
               Cow position:chrX:37814260-37815032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:487
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):73, 466

               
               
               Conread position:8-743
               
               
               Cow position:chrX:12345051-12345830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:480
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-766
               
               
               Cow position:chrX:2486766-2487551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:484
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-766
               
               
               Cow position:chrX:14596969-14597767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:8-828
               
               
               Cow position:chrX:13072335-13071474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:874
               
               
               Alignm identity:549
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-828
               
               
               Cow position:chrX:13092895-13092034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:874
               
               
               Alignm identity:549
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-830
               
               
               Cow position:chrX:16701794-16702642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:869
               
               
               Alignm identity:533
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-830
               
               
               Cow position:chrX:29095205-29094347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:869
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-843
               
               
               Cow position:chrX:387250-388123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:891
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:8-843
               
               
               Cow position:chrX:4906881-4905997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:900
               
               
               Alignm identity:557
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-843
               
               
               Cow position:chrX:12464117-12464998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:890
               
               
               Alignm identity:542
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:8-880
               
               
               Cow position:chrX:14461428-14462349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chrX:3359941-3360851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:574
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:8-881
               
               
               Cow position:chrX:22810008-22810920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:922
               
               
               Alignm identity:565
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-881
               
               
               Cow position:chrX:26756530-26755609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:580
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:8-881
               
               
               Cow position:chrX:29911448-29912371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:929
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:8-881
               
               
               Cow position:chrX:32065052-32064138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-881
               
               
               Cow position:chrX:36536616-36535699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:928
               
               
               Alignm identity:573
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:8-881
               
               
               Cow position:chrX:37851256-37852168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:923
               
               
               Alignm identity:567
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-883
               
               
               Cow position:chrX:3083023-3082101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:933
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-883
               
               
               Cow position:chrX:13407169-13406253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:569
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:8-885
               
               
               Cow position:chrX:5333318-5332396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:935
               
               
               Alignm identity:583
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-891
               
               
               Cow position:chrX:30181815-30180885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:577
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:8-893
               
               
               Cow position:chrX:2814367-2813441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:5360122-5361051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:581
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:5865252-5866187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:945
               
               
               Alignm identity:586
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:6580054-6580976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:573
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:7754016-7754947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:947
               
               
               Alignm identity:590
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:9010449-9011373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:945
               
               
               Alignm identity:588
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:11462883-11461951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:574
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:8-893
               
               
               Cow position:chrX:12359000-12359929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:944
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:16045088-16046014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:575
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):116, 43

               
               
               Conread position:8-893
               
               
               Cow position:chrX:18221529-18222456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:937
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:18657691-18656764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:19475038-19474107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:949
               
               
               Alignm identity:606
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:8-893
               
               
               Cow position:chrX:24412142-24413068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:939
               
               
               Alignm identity:578
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:8-893
               
               
               Cow position:chrX:24770740-24769815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:940
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 24

               
               
               Conread position:8-893
               
               
               Cow position:chrX:27424173-27423229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:956
               
               
               Alignm identity:601
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 331

               
               
               Conread position:8-893
               
               
               Cow position:chrX:35531972-35532896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:8-894
               
               
               Cow position:chrX:27304062-27304971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:930
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:8-921
               
               
               Cow position:chrX:10867736-10866791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:961
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-921
               
               
               Cow position:chrX:23279140-23280094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:965
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:8-921
               
               
               Cow position:chrX:23394718-23395677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:967
               
               
               Alignm identity:582
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:8-921
               
               
               Cow position:chrX:23573691-23572747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:967
               
               
               Alignm identity:599
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:8-925
               
               
               Cow position:chrX:23021427-23022393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:975
               
               
               Alignm identity:592
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:9-893
               
               
               Cow position:chrX:31494847-31495778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:938
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:10-250
               
               
               Cow position:chrX:30976928-30976681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 58

               
               
               Conread position:11-475
               
               
               Cow position:chrX:21766745-21767235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-892
               
               
               Cow position:chrX:10529671-10528744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:580
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chrX:8481568-8482488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:932
               
               
               Alignm identity:568
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:11-893
               
               
               Cow position:chrX:19397890-19398819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:945
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:11-893
               
               
               Cow position:chrX:20357887-20356958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:936
               
               
               Alignm identity:569
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:14-411
               
               
               Cow position:chrX:5281663-5281254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:14-788
               
               
               Cow position:chrX:3419102-3418285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:511
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:14-881
               
               
               Cow position:chrX:21342530-21343425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:920
               
               
               Alignm identity:564
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 62

               
               
               Conread position:14-893
               
               
               Cow position:chrX:17053680-17054609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:941
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 56

               
               
               Conread position:14-893
               
               
               Cow position:chrX:22565569-22564642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:945
               
               
               Alignm identity:612
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 22

               
               
               Conread position:14-893
               
               
               Cow position:chrX:28754221-28753295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:943
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:15-383
               
               
               Cow position:chrX:20732374-20732747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):100, 53

               
               
               Conread position:15-475
               
               
               Cow position:chrX:37820277-37820742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:300
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:15-476
               
               
               Cow position:chrX:16710083-16710572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:15-536
               
               
               Cow position:chrX:7174882-7175401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:351
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:15-736
               
               
               Cow position:chrX:7810837-7810080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:472
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 110

               
               
               Conread position:15-783
               
               
               Cow position:chrX:38149715-38150524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 143

               
               
               Conread position:18-536
               
               
               Cow position:chrX:18919776-18920298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:356
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:24-465
               
               
               Cow position:chrX:20134020-20133561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:35-842
               
               
               Cow position:chrX:43437767-43436910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:871
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:37-394
               
               
               Cow position:chrX:8961682-8961312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:37-407
               
               
               Cow position:chrX:24444927-24444545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:37-841
               
               
               Cow position:chrX:23133744-23134579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:851
               
               
               Alignm identity:533
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:46-410
               
               
               Cow position:chrX:31727624-31728004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:46-411
               
               
               Cow position:chrX:12667178-12666800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:56-541
               
               
               Cow position:chrX:13243816-13244317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:333
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:65-926
               
               
               Cow position:chrX:30090849-30089970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:903
               
               
               Alignm identity:551
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):22, 159

               
               
               Conread position:86-407
               
               
               Cow position:chrX:15569724-15569386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 210

               
               
               Conread position:88-883
               
               
               Cow position:chrX:27317421-27318264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:849
               
               
               Alignm identity:518
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:89-893
               
               
               Cow position:chrX:19607868-19608716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:856
               
               
               Alignm identity:526
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):35, 294

               
               
               Conread position:120-921
               
               
               Cow position:chrX:21581667-21582513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:854
               
               
               Alignm identity:524
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:135-400
               
               
               Cow position:chrX:302346-302620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:135-411
               
               
               Cow position:chrX:36194143-36194431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 245

               
               
               Conread position:135-475
               
               
               Cow position:chrX:38963471-38963111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:135-770
               
               
               Cow position:chrX:20366926-20366261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:422
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:135-788
               
               
               Cow position:chrX:3466117-3465429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:421
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 110

               
               
               Conread position:144-893
               
               
               Cow position:chrX:26274399-26275180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:461
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):88, 383

               
               
               Conread position:158-408
               
               
               Cow position:chrX:23073413-23073672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 162

               
               
               Conread position:158-466
               
               
               Cow position:chrX:27645322-27645649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 132

               
               
               Conread position:158-789
               
               
               Cow position:chrX:30112400-30113036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:413
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):46, 138

               
               
               Conread position:160-893
               
               
               Cow position:chrX:672720-671952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:775
               
               
               Alignm identity:479
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:176-574
               
               
               Cow position:chrX:23236176-23236585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 127

               
               
               Conread position:176-749
               
               
               Cow position:chrX:25406459-25405859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:394
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 169

               
               
               Conread position:178-562
               
               
               Cow position:chrX:2118104-2117713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 200

               
               
               Conread position:180-555
               
               
               Cow position:chrX:9086002-9086380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:203-540
               
               
               Cow position:chrX:19621675-19622026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):27, 279

               
               
               Conread position:208-942
               
               
               Cow position:chrX:39764895-39765650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:504
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:230-893
               
               
               Cow position:chrX:26231418-26230717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:448
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):15, 296

               
               
               Conread position:230-929
               
               
               Cow position:chrX:20581675-20582358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:452
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:235-766
               
               
               Cow position:chrX:4413235-4413782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:355
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):10, 117

               
               
               Conread position:241-773
               
               
               Cow position:chrX:15575324-15574771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:366
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:256-615
               
               
               Cow position:chrX:1013457-1013819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:317-945
               
               
               Cow position:chrX:29196198-29196850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:410
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 142

               
               
               Conread position:400-946
               
               
               Cow position:chrX:31502935-31503490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:350
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):157, 58

               
               
               Conread position:471-946
               
               
               Cow position:chrX:16859078-16858575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:323
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):90, 50

               
               
               Conread position:595-945
               
               
               Cow position:chrX:10823351-10823000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:595-946
               
               
               Cow position:chrX:29029952-29029605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:616-926
               
               
               Cow position:chrX:11905239-11904923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 112

               
               
               Conread position:617-946
               
               
               Cow position:chrX:23327042-23326707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):173, 185

               
               
               Conread position:618-889
               
               
               Cow position:chrX:28132863-28133137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):172, 208

               
               
               Conread position:618-899
               
               
               Cow position:chrX:17067340-17067062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):112, 22

               
               
               Conread position:618-946
               
               
               Cow position:chrX:10410305-10409992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):172, 55

               
               
               Conread position:621-913
               
               
               Cow position:chrX:18289318-18289024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 65

               
               
               Conread position:621-945
               
               
               Cow position:chrX:13654258-13654589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 56

               
               
               Conread position:621-946
               
               
               Cow position:chrX:17159353-17159020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:622-921
               
               
               Cow position:chrX:11951004-11950700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):181, 174

               
               
               Conread position:626-941
               
               
               Cow position:chrX:17523456-17523136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:626-945
               
               
               Cow position:chrX:9155988-9156305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):176, 188

               
               
               Conread position:627-930
               
               
               Cow position:chrX:29022496-29022808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:627-930
               
               
               Cow position:chrX:29028465-29028777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:628-945
               
               
               Cow position:chrX:25321473-25321152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:628-946
               
               
               Cow position:chrX:6026925-6026601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:629-946
               
               
               Cow position:chrX:23236816-23237140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):161, 243

               
               
               Conread position:633-914
               
               
               Cow position:chrX:41860288-41860574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):196, 75

               
               
               Conread position:643-929
               
               
               Cow position:chrX:863103-862817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):138, 67

               
               
               Conread position:646-947
               
               
               Cow position:chrX:37944344-37944041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 121

               
               
               Conread position:679-946
               
               
               Cow position:chrX:21190688-21190957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 57

               
               
               Conread position:691-945
               
               
               Cow position:chrX:15569041-15568782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):126, 36

               
               
               Conread position:691-946
               
               
               Cow position:chrX:6673075-6673335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:694-906
               
               
               Cow position:chrX:515807-516026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 105

               
               
               Conread position:696-945
               
               
               Cow position:chrX:31803729-31803985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 107

               
               
               Conread position:708-930
               
               
               Cow position:chrX:27508429-27508208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):105, 67
Conread position:	1-893
Cow position:	chr10:1663589-1662666 (view UCSC Genome Browser custom track)
Alignm length:	938
Alignm identity:	579
Alignm E-value:	0
Alignm gaps (pig, cow):	124, 69
Conread position:	1-946
Cow position:	chr10:32827122-32828086 (view UCSC Genome Browser custom track)
Alignm length:	993
Alignm identity:	610
Alignm E-value:	6.00036e-42
Alignm gaps (pig, cow):	38, 59
Conread position:	2-294
Cow position:	chr10:20268322-20268019 (view UCSC Genome Browser custom track)
Alignm length:	305
Alignm identity:	196
Alignm E-value:	6e-21
Alignm gaps (pig, cow):	84, 66
Conread position:	2-464
Cow position:	chr10:19543053-19542586 (view UCSC Genome Browser custom track)
Alignm length:	479
Alignm identity:	305
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	79, 27
Conread position:	2-472
Cow position:	chr10:32559549-32560014 (view UCSC Genome Browser custom track)
Alignm length:	479
Alignm identity:	295
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	82, 112
Conread position:	6-410
Cow position:	chr10:4560188-4559792 (view UCSC Genome Browser custom track)
Alignm length:	412
Alignm identity:	262
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	118, 70
Conread position:	7-376
Cow position:	chr10:40821610-40821228 (view UCSC Genome Browser custom track)
Alignm length:	385
Alignm identity:	263
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	77, 61
Conread position:	7-761
Cow position:	chr10:25004305-25005085 (view UCSC Genome Browser custom track)
Alignm length:	800
Alignm identity:	499
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	117, 25
Conread position:	8-297
Cow position:	chr10:53172942-53172641 (view UCSC Genome Browser custom track)
Alignm length:	304
Alignm identity:	202
Alignm E-value:	9e-25
Alignm gaps (pig, cow):	24, 28
Conread position:	8-351
Cow position:	chr10:31855858-31856214 (view UCSC Genome Browser custom track)
Alignm length:	360
Alignm identity:	237
Alignm E-value:	5e-29
Alignm gaps (pig, cow):	24, 28
Conread position:	8-357
Cow position:	chr10:61133519-61133870 (view UCSC Genome Browser custom track)
Alignm length:	362
Alignm identity:	233
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	75, 157
Conread position:	8-417
Cow position:	chr10:57505852-57506263 (view UCSC Genome Browser custom track)
Alignm length:	429
Alignm identity:	287
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	77, 62
Conread position:	8-429
Cow position:	chr10:2118648-2118214 (view UCSC Genome Browser custom track)
Alignm length:	438
Alignm identity:	256
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	78, 60
Conread position:	8-475
Cow position:	chr10:21738350-21737859 (view UCSC Genome Browser custom track)
Alignm length:	496
Alignm identity:	325
Alignm E-value:	1e-37
Alignm gaps (pig, cow):	24, 28
Conread position:	8-476
Cow position:	chr10:3287740-3287263 (view UCSC Genome Browser custom track)
Alignm length:	487
Alignm identity:	304
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	107, 68
Conread position:	8-477
Cow position:	chr10:24100702-24100227 (view UCSC Genome Browser custom track)
Alignm length:	489
Alignm identity:	310
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	200, 41
Conread position:	8-561
Cow position:	chr10:46762586-46763144 (view UCSC Genome Browser custom track)
Alignm length:	578
Alignm identity:	375
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	24, 28
Conread position:	8-582
Cow position:	chr10:41879315-41879904 (view UCSC Genome Browser custom track)
Alignm length:	603
Alignm identity:	387
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	78, 60
Conread position:	8-766
Cow position:	chr10:33868808-33868008 (view UCSC Genome Browser custom track)
Alignm length:	811
Alignm identity:	516
Alignm E-value:	0
Alignm gaps (pig, cow):	73, 156
Conread position:	8-783
Cow position:	chr10:32008454-32009269 (view UCSC Genome Browser custom track)
Alignm length:	830
Alignm identity:	530
Alignm E-value:	0
Alignm gaps (pig, cow):	24, 28