Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01F070066.5.5 |
| Conread position: | 248-757 |
| Cow position: | chr1:43452709-43452200 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 136 |
| Conread position: | 248-757 |
| Cow position: | chr1:57267858-57268365 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 296-709 |
| Cow position: | chr1:72999474-72999888 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 317, 0 |
| Conread position: | 248-757 |
| Cow position: | chr10:27427211-27427716 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 253-745 |
| Cow position: | chr10:49576519-49577014 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 151, 143 |
| Conread position: | 528-757 |
| Cow position: | chr11:8088669-8088435 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 39-963 |
| Cow position: | chr12:48464010-48464955 (view UCSC Genome Browser custom track) |
| Alignm length: | 950 |
| Alignm identity: | 819 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 679 |
| Conread position: | 63-757 |
| Cow position: | chr12:36191436-36190748 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 179-760 |
| Cow position: | chr13:60611540-60612122 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 248-757 |
| Cow position: | chr13:30334624-30335121 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 281-757 |
| Cow position: | chr13:57445509-57445985 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 248-757 |
| Cow position: | chr14:40766631-40766139 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 313 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 222, 0 |
| Conread position: | 107-956 |
| Cow position: | chr15:22547610-22546743 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 750 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 759 |
| Conread position: | 698-958 |
| Cow position: | chr15:24684581-24684847 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 156 |
| Conread position: | 248-757 |
| Cow position: | chr16:42016120-42015615 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 306 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 344-476 |
| Cow position: | chr16:17938127-17938262 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 38-866 |
| Cow position: | chr17:18745687-18746524 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 699 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 344-757 |
| Cow position: | chr17:11243258-11242856 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 27 |
| Conread position: | 855-1024 |
| Cow position: | chr17:18746680-18746847 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 112-870 |
| Cow position: | chr18:50297966-50298689 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 91 |
| Conread position: | 249-757 |
| Cow position: | chr18:48797591-48797083 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 139, 128 |
| Conread position: | 621-757 |
| Cow position: | chr18:48134299-48134435 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 803-940 |
| Cow position: | chr19:40287149-40287283 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 299-525 |
| Cow position: | chr20:38066545-38066337 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 618-902 |
| Cow position: | chr20:38065786-38065503 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 153, 88 |
| Conread position: | 75-689 |
| Cow position: | chr21:30160295-30159677 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 248-757 |
| Cow position: | chr21:47003355-47002846 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-773 |
| Cow position: | chr21:31307216-31307692 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 5, 54 |
| Conread position: | 321-757 |
| Cow position: | chr23:22235728-22236155 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 296, 72 |
| Conread position: | 248-652 |
| Cow position: | chr24:38465831-38465429 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 178, 143 |
| Conread position: | 287-757 |
| Cow position: | chr24:27203888-27204357 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 281-757 |
| Cow position: | chr28:25598919-25598447 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 304 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 108, 205 |
| Conread position: | 8-344 |
| Cow position: | chr29:31523525-31523885 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 321-757 |
| Cow position: | chr29:25664395-25664832 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 95, 79 |
| Conread position: | 344-491 |
| Cow position: | chr29:31525240-31525387 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 459-672 |
| Cow position: | chr29:14578214-14578417 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 490-623 |
| Cow position: | chr29:31525675-31525808 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 619-940 |
| Cow position: | chr29:31525900-31526219 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 227 |
| Conread position: | 49-190 |
| Cow position: | chr3:5120753-5120609 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 134-846 |
| Cow position: | chr3:5120692-5119988 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 224-791 |
| Cow position: | chr3:75190048-75190615 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 206 |
| Conread position: | 248-757 |
| Cow position: | chr3:27172191-27171682 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 191, 66 |
| Conread position: | 260-685 |
| Cow position: | chr3:79273976-79274386 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 265, 39 |
| Conread position: | 281-757 |
| Cow position: | chr3:43331702-43331226 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 296 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 108, 116 |
| Conread position: | 292-699 |
| Cow position: | chr3:76263438-76263836 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 90 |
| Conread position: | 394-757 |
| Cow position: | chr3:8194544-8194181 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 115 |
| Conread position: | 442-757 |
| Cow position: | chr3:16292228-16292542 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 249-757 |
| Cow position: | chr4:44409343-44408834 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 155, 72 |
| Conread position: | 524-757 |
| Cow position: | chr5:62642782-62643014 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 611-939 |
| Cow position: | chr7:22824223-22824545 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 78 |
| Conread position: | 225-937 |
| Cow position: | chr9:42068506-42067787 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 212 |
| Conread position: | 248-757 |
| Cow position: | chr9:51909251-51908742 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 447 |
| Conread position: | 722-937 |
| Cow position: | chr9:16056757-16056974 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 38-962 |
| Cow position: | chrX:17102506-17101551 (view UCSC Genome Browser custom track) |
| Alignm length: | 959 |
| Alignm identity: | 815 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 841 |
| Conread position: | 451-869 |
| Cow position: | chrX:13392375-13391963 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 162 |