Cow genome map
| Conread name: | Ss1.1-rlnt12c_p12.5 |
| Conread position: | 1-528 |
| Cow position: | chr1:54458224-54457707 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 1-528 |
| Cow position: | chr11:1692576-1692050 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 262 |
| Conread position: | 1-528 |
| Cow position: | chr11:44643216-44642695 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 28 |
| Conread position: | 1-228 |
| Cow position: | chr12:1637773-1638000 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-228 |
| Cow position: | chr12:1660702-1660475 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-236 |
| Cow position: | chr12:1670800-1670564 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 0 |
| Conread position: | 1-229 |
| Cow position: | chr14:9970077-9970305 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-100 |
| Cow position: | chr16:17446398-17446497 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-528 |
| Cow position: | chr16:17450957-17451396 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 278 |
| Conread position: | 138-510 |
| Cow position: | chr17:24911921-24911572 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-526 |
| Cow position: | chr18:56466646-56466119 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 368 |
| Conread position: | 1-229 |
| Cow position: | chr19:51023463-51023235 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-229 |
| Cow position: | chr19:49797522-49797674 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-281 |
| Cow position: | chr2:39307191-39307461 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 268-528 |
| Cow position: | chr2:39307478-39307739 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 1-261 |
| Cow position: | chr21:14502104-14502360 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 128-528 |
| Cow position: | chr21:40434304-40433918 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 262-528 |
| Cow position: | chr21:14503004-14503269 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-228 |
| Cow position: | chr23:25802149-25801922 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-228 |
| Cow position: | chr23:25812028-25812255 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-234 |
| Cow position: | chr23:24195067-24194835 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 1-241 |
| Cow position: | chr23:25828649-25828410 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 10-199 |
| Cow position: | chr24:11581749-11581931 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-228 |
| Cow position: | chr3:62433343-62433570 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-228 |
| Cow position: | chr3:62443975-62444202 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-229 |
| Cow position: | chr3:17644091-17644319 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-229 |
| Cow position: | chr3:62482114-62482342 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-231 |
| Cow position: | chr3:17612432-17612202 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-231 |
| Cow position: | chr3:17626585-17626815 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-525 |
| Cow position: | chr3:30493363-30492853 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 1-528 |
| Cow position: | chr4:10384812-10384292 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 120-520 |
| Cow position: | chr4:29336075-29336460 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 72, 67 |
| Conread position: | 1-528 |
| Cow position: | chr5:33725594-33725073 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-227 |
| Cow position: | chr7:968618-968392 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-528 |
| Cow position: | chr7:15736729-15737248 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 207-528 |
| Cow position: | chr9:45757926-45758239 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 52, 23 |