Cow genome map
| Conread name: | Ss1.1-rmcp35c_c12.5 |
| Conread position: | 329-523 |
| Cow position: | chr1:18490625-18490428 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 27-144 |
| Cow position: | chr11:21976962-21977079 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-217 |
| Cow position: | chr11:35785545-35785703 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 135 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-269 |
| Cow position: | chr11:21613145-21613352 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-589 |
| Cow position: | chr11:15691821-15691296 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 198 |
| Conread position: | 196-284 |
| Cow position: | chr11:21977873-21977961 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-629 |
| Cow position: | chr11:35785694-35786085 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 257-615 |
| Cow position: | chr11:21613625-21613979 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 279-419 |
| Cow position: | chr11:21978330-21978470 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 414-599 |
| Cow position: | chr11:21978861-21979045 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 173-327 |
| Cow position: | chr12:462733-462888 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 91-327 |
| Cow position: | chr17:27755528-27755765 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 94-320 |
| Cow position: | chr17:26092049-26091823 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-321 |
| Cow position: | chr17:26090909-26090682 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-321 |
| Cow position: | chr17:26091137-26090910 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-321 |
| Cow position: | chr17:26091365-26091138 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-321 |
| Cow position: | chr17:26091593-26091366 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-321 |
| Cow position: | chr17:26091821-26091594 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-321 |
| Cow position: | chr17:26092277-26092050 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-321 |
| Cow position: | chr17:26092505-26092278 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-321 |
| Cow position: | chr17:26092733-26092506 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-321 |
| Cow position: | chr17:26092961-26092734 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-323 |
| Cow position: | chr17:26090681-26090452 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-321 |
| Cow position: | chr17:26093188-26092962 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 195-327 |
| Cow position: | chr17:17083185-17083318 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 91-322 |
| Cow position: | chr19:23764695-23764464 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-322 |
| Cow position: | chr19:23764235-23764008 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-322 |
| Cow position: | chr19:23764463-23764236 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-327 |
| Cow position: | chr19:23764007-23763774 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 93-294 |
| Cow position: | chr24:27055481-27055683 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 59-426 |
| Cow position: | chr26:15318012-15317652 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 113 |
| Conread position: | 127-627 |
| Cow position: | chr26:15557822-15557364 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 72 |
| Conread position: | 452-595 |
| Cow position: | chr26:15317654-15317511 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-620 |
| Cow position: | chr3:16890571-16891125 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 0 |
| Conread position: | 88-198 |
| Cow position: | chr7:2025309-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-615 |
| Cow position: | chr8:57981953-57982515 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 531 |
| Conread position: | 215-350 |
| Cow position: | chr9:61723819-61723688 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 0 |