Cow genome map
| Conread name: | Ss1.1-rpigcf0_017648.5 |
| Conread position: | 246-417 |
| Cow position: | chr1:46243963-46244133 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 262-424 |
| Cow position: | chr1:81825886-81826050 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 200-417 |
| Cow position: | chr10:25502406-25502625 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 85 |
| Conread position: | 202-417 |
| Cow position: | chr10:29744303-29744520 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 83 |
| Conread position: | 214-387 |
| Cow position: | chr10:25932018-25931843 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 96, 70 |
| Conread position: | 228-370 |
| Cow position: | chr11:39654850-39654991 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 56 |
| Conread position: | 107-375 |
| Cow position: | chr12:28254704-28254444 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 82, 108 |
| Conread position: | 201-447 |
| Cow position: | chr14:26159400-26159152 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 86 |
| Conread position: | 163-419 |
| Cow position: | chr15:6174362-6174619 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 184-417 |
| Cow position: | chr15:6184577-6184806 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 21 |
| Conread position: | 256-385 |
| Cow position: | chr15:527388-527518 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 181-417 |
| Cow position: | chr16:23666721-23666484 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 24 |
| Conread position: | 198-374 |
| Cow position: | chr16:32592201-32592029 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 110, 7 |
| Conread position: | 210-391 |
| Cow position: | chr16:21566726-21566903 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 98, 64 |
| Conread position: | 14-155 |
| Cow position: | chr17:31602264-31602124 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 186-392 |
| Cow position: | chr17:31601806-31601601 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 198-417 |
| Cow position: | chr17:2805746-2805543 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 310-414 |
| Cow position: | chr17:24983392-24983288 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-306 |
| Cow position: | chr18:44763092-44762787 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 105, 80 |
| Conread position: | 215-417 |
| Cow position: | chr18:32296994-32296803 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 181-319 |
| Cow position: | chr19:20674496-20674633 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 24 |
| Conread position: | 198-372 |
| Cow position: | chr19:36474994-36474819 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 111, 7 |
| Conread position: | 200-420 |
| Cow position: | chr19:13877808-13877586 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 201-479 |
| Cow position: | chr19:28439724-28439987 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 255-391 |
| Cow position: | chr19:4324560-4324426 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 277-417 |
| Cow position: | chr19:35608878-35609020 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 312-417 |
| Cow position: | chr19:20675770-20675878 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 14-419 |
| Cow position: | chr21:20776318-20775895 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 150-417 |
| Cow position: | chr22:12667781-12667514 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 225-417 |
| Cow position: | chr22:12964396-12964202 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 60 |
| Conread position: | 198-354 |
| Cow position: | chr23:12099293-12099443 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 112, 7 |
| Conread position: | 198-422 |
| Cow position: | chr23:11730710-11730490 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 97, 7 |
| Conread position: | 205-417 |
| Cow position: | chr23:23937574-23937360 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 80 |
| Conread position: | 215-401 |
| Cow position: | chr23:8201415-8201229 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 252-420 |
| Cow position: | chr23:26323282-26323114 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 150 |
| Conread position: | 289-400 |
| Cow position: | chr24:16956790-16956903 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 296-449 |
| Cow position: | chr24:35053825-35053974 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 253-412 |
| Cow position: | chr25:33789202-33789361 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 296-424 |
| Cow position: | chr25:24491869-24491999 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 201-416 |
| Cow position: | chr26:17662139-17661930 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 111, 63 |
| Conread position: | 201-394 |
| Cow position: | chr27:25168376-25168571 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 83 |
| Conread position: | 14-442 |
| Cow position: | chr28:8638185-8638610 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 278 |
| Conread position: | 200-413 |
| Cow position: | chr29:39588206-39588419 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 84 |
| Conread position: | 17-418 |
| Cow position: | chr3:69218827-69219242 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 22 |
| Conread position: | 198-434 |
| Cow position: | chr3:35467337-35467104 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 181-424 |
| Cow position: | chr4:44648800-44649044 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 24 |
| Conread position: | 14-186 |
| Cow position: | chr5:67954528-67954700 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 141 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 198-417 |
| Cow position: | chr5:2190721-2190500 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 86 |
| Conread position: | 201-422 |
| Cow position: | chr5:69097346-69097570 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 108, 86 |
| Conread position: | 16-418 |
| Cow position: | chr6:26948106-26947693 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 215 |
| Conread position: | 14-417 |
| Cow position: | chr7:43306332-43305917 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 181-420 |
| Cow position: | chr7:58446052-58445814 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 129, 24 |
| Conread position: | 198-417 |
| Cow position: | chr7:1791376-1791602 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 111, 7 |
| Conread position: | 198-390 |
| Cow position: | chrX:30096186-30096379 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 111, 7 |
| Conread position: | 198-420 |
| Cow position: | chrX:41748730-41748946 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 205-427 |
| Cow position: | chrX:36190228-36190011 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 106, 34 |