Cow genome map
| Conread name: | Ss1.1-rptbr0134_l9.5 | 
| Conread position: | 580-770 | 
| Cow position: | chr1:10647587-10647775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 29, 106 | 
| Conread position: | 625-794 | 
| Cow position: | chr1:43225938-43226116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 9e-22 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 634-807 | 
| Cow position: | chr1:57007785-57007957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 90, 41 | 
| Conread position: | 639-789 | 
| Cow position: | chr1:70660861-70661014 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 9e-22 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 503-888 | 
| Cow position: | chr10:53810548-53810931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 69 | 
| Conread position: | 608-810 | 
| Cow position: | chr10:39400283-39400482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 25, 61 | 
| Conread position: | 621-810 | 
| Cow position: | chr10:6565588-6565397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 9e-36 | 
| Alignm gaps (pig, cow): | 13, 153 | 
| Conread position: | 623-737 | 
| Cow position: | chr10:55616045-55616162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 624-798 | 
| Cow position: | chr10:66466344-66466167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 9e-36 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 624-805 | 
| Cow position: | chr10:37244156-37244338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 147, 0 | 
| Conread position: | 633-794 | 
| Cow position: | chr10:14418039-14417877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 130, 74 | 
| Conread position: | 634-813 | 
| Cow position: | chr10:27747614-27747801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 22, 100 | 
| Conread position: | 700-813 | 
| Cow position: | chr10:20931948-20931834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 115 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 618-805 | 
| Cow position: | chr11:78189753-78189564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 20, 112 | 
| Conread position: | 623-810 | 
| Cow position: | chr11:7625883-7625691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 139, 118 | 
| Conread position: | 578-797 | 
| Cow position: | chr12:33815277-33815492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 57, 147 | 
| Conread position: | 625-813 | 
| Cow position: | chr12:23997107-23996917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 16, 113 | 
| Conread position: | 625-812 | 
| Cow position: | chr13:28772511-28772698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 132, 68 | 
| Conread position: | 625-813 | 
| Cow position: | chr13:33498571-33498761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 12, 171 | 
| Conread position: | 635-803 | 
| Cow position: | chr14:32266768-32266929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 59, 0 | 
| Conread position: | 623-801 | 
| Cow position: | chr15:9643227-9643045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 625-810 | 
| Cow position: | chr15:9270828-9271022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 11, 114 | 
| Conread position: | 626-804 | 
| Cow position: | chr15:27448339-27448512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 13, 60 | 
| Conread position: | 669-794 | 
| Cow position: | chr15:28991862-28991736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 607-791 | 
| Cow position: | chr16:47793369-47793549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 27, 131 | 
| Conread position: | 623-771 | 
| Cow position: | chr16:4711207-4711355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 13, 114 | 
| Conread position: | 638-811 | 
| Cow position: | chr16:47985189-47985018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 69, 28 | 
| Conread position: | 570-746 | 
| Cow position: | chr17:2510037-2509856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 36, 172 | 
| Conread position: | 570-746 | 
| Cow position: | chr17:2514430-2514611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 36, 172 | 
| Conread position: | 584-797 | 
| Cow position: | chr17:28394636-28394852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 24, 181 | 
| Conread position: | 619-768 | 
| Cow position: | chr17:28161170-28161316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 19, 95 | 
| Conread position: | 625-809 | 
| Cow position: | chr17:9050823-9051013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 12, 117 | 
| Conread position: | 636-779 | 
| Cow position: | chr17:29122767-29122624 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 135, 29 | 
| Conread position: | 636-810 | 
| Cow position: | chr17:27556430-27556605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 131, 0 | 
| Conread position: | 623-798 | 
| Cow position: | chr18:5440411-5440586 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 10, 53 | 
| Conread position: | 625-769 | 
| Cow position: | chr18:16355150-16355007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 14, 112 | 
| Conread position: | 625-793 | 
| Cow position: | chr18:39878635-39878474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 14, 62 | 
| Conread position: | 627-808 | 
| Cow position: | chr18:11793314-11793499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 629-812 | 
| Cow position: | chr18:44040919-44041106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 9, 109 | 
| Conread position: | 623-810 | 
| Cow position: | chr19:47455197-47455385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 18, 129 | 
| Conread position: | 635-759 | 
| Cow position: | chr19:17458417-17458292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 573-789 | 
| Cow position: | chr2:60891951-60892159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 33, 113 | 
| Conread position: | 573-799 | 
| Cow position: | chr2:48776277-48776047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 26, 137 | 
| Conread position: | 623-801 | 
| Cow position: | chr2:72198995-72199178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 573-769 | 
| Cow position: | chr22:29570541-29570346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 36, 15 | 
| Conread position: | 625-810 | 
| Cow position: | chr22:42967211-42967401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 13, 169 | 
| Conread position: | 634-827 | 
| Cow position: | chr22:42617756-42617941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 92, 36 | 
| Conread position: | 539-796 | 
| Cow position: | chr23:511849-512102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 15, 21 | 
| Conread position: | 636-808 | 
| Cow position: | chr23:28769754-28769580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 127, 0 | 
| Conread position: | 623-810 | 
| Cow position: | chr24:17094269-17094074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 11, 61 | 
| Conread position: | 570-808 | 
| Cow position: | chr25:21301584-21301343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 50, 55 | 
| Conread position: | 597-810 | 
| Cow position: | chr25:10901063-10901284 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 41, 15 | 
| Conread position: | 624-801 | 
| Cow position: | chr25:23841318-23841136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 12, 115 | 
| Conread position: | 636-801 | 
| Cow position: | chr25:9608987-9609159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 41, 8 | 
| Conread position: | 638-805 | 
| Cow position: | chr25:16133351-16133522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 128, 0 | 
| Conread position: | 573-770 | 
| Cow position: | chr26:14415324-14415137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 638-810 | 
| Cow position: | chr26:26936137-26935964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 41, 37 | 
| Conread position: | 625-805 | 
| Cow position: | chr27:6145286-6145102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 19, 0 | 
| Conread position: | 627-802 | 
| Cow position: | chr27:30276789-30276971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 573-761 | 
| Cow position: | chr28:4203325-4203509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 25, 141 | 
| Conread position: | 628-813 | 
| Cow position: | chr28:2833933-2834118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 9, 75 | 
| Conread position: | 629-791 | 
| Cow position: | chr28:13830319-13830149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 559-806 | 
| Cow position: | chr29:36588628-36588387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 15, 48 | 
| Conread position: | 578-812 | 
| Cow position: | chr29:5199375-5199608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 57, 135 | 
| Conread position: | 624-801 | 
| Cow position: | chr29:40353792-40353615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 14, 81 | 
| Conread position: | 622-807 | 
| Cow position: | chr3:48401226-48401042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 12, 40 | 
| Conread position: | 625-758 | 
| Cow position: | chr3:43383713-43383579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 10, 114 | 
| Conread position: | 625-792 | 
| Cow position: | chr3:24784552-24784718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 9, 44 | 
| Conread position: | 625-801 | 
| Cow position: | chr3:26883139-26883315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 13, 100 | 
| Conread position: | 627-800 | 
| Cow position: | chr3:46354540-46354711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 17, 63 | 
| Conread position: | 567-750 | 
| Cow position: | chr4:36724158-36723974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 573-804 | 
| Cow position: | chr4:41072793-41072555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 28, 56 | 
| Conread position: | 589-816 | 
| Cow position: | chr4:55367909-55368134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 20, 11 | 
| Conread position: | 624-798 | 
| Cow position: | chr4:30952938-30953122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 625-807 | 
| Cow position: | chr4:36424208-36424022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 13, 40 | 
| Conread position: | 640-792 | 
| Cow position: | chr4:43986062-43986218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 37, 53 | 
| Conread position: | 585-812 | 
| Cow position: | chr5:71395051-71394826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 50, 123 | 
| Conread position: | 588-803 | 
| Cow position: | chr5:49007589-49007375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 27, 46 | 
| Conread position: | 625-808 | 
| Cow position: | chr5:16068906-16068720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 9, 113 | 
| Conread position: | 626-791 | 
| Cow position: | chr5:67295925-67296090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 8, 62 | 
| Conread position: | 570-805 | 
| Cow position: | chr6:37434973-37435215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 68, 53 | 
| Conread position: | 623-808 | 
| Cow position: | chr6:29730183-29729995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 8e-24 | 
| Alignm gaps (pig, cow): | 9, 90 | 
| Conread position: | 625-801 | 
| Cow position: | chr6:32730997-32730828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 9, 47 | 
| Conread position: | 630-812 | 
| Cow position: | chr6:11166132-11166316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 8e-24 | 
| Alignm gaps (pig, cow): | 127, 107 | 
| Conread position: | 631-797 | 
| Cow position: | chr6:56611654-56611821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 123, 76 | 
| Conread position: | 635-816 | 
| Cow position: | chr6:2056658-2056475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 41, 164 | 
| Conread position: | 538-735 | 
| Cow position: | chr7:23625087-23625283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 95, 22 | 
| Conread position: | 584-801 | 
| Cow position: | chr7:38402349-38402572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 625-805 | 
| Cow position: | chr7:50764040-50763854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 561-776 | 
| Cow position: | chr8:54935786-54935568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 13, 55 | 
| Conread position: | 640-806 | 
| Cow position: | chr8:48192004-48191836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 7e-34 | 
| Alignm gaps (pig, cow): | 126, 92 | 
| Conread position: | 625-813 | 
| Cow position: | chr9:20933821-20933628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 13, 56 | 
| Conread position: | 627-808 | 
| Cow position: | chr9:24696150-24695968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 11, 36 | 
| Conread position: | 625-769 | 
| Cow position: | chrX:22142364-22142218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 634-747 | 
| Cow position: | chrX:32753711-32753824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 115 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 55, 103 | 
