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Cow genome map

           
Conread name:
           
Ss1.1-rret14_m21.5
        

               
Conread position:
               
1056-1282
               

               
Cow position:
               
chr10:9576093-9575869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1056-1296
               

               
Cow position:
               
chr10:16598644-16598883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
100, 119
               

               
Conread position:
               
1059-1268
               

               
Cow position:
               
chr10:30929929-30929719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
35, 138
               

               
Conread position:
               
1059-1285
               

               
Cow position:
               
chr10:46799102-46799319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
1061-1278
               

               
Cow position:
               
chr10:41397431-41397651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
20, 107
               

               
Conread position:
               
1061-1283
               

               
Cow position:
               
chr10:23576507-23576720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1063-1296
               

               
Cow position:
               
chr10:63883897-63884140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1064-1290
               

               
Cow position:
               
chr10:31362251-31362030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 115
               

               
Conread position:
               
1067-1209
               

               
Cow position:
               
chr10:53405439-53405579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1067-1273
               

               
Cow position:
               
chr10:49634033-49634236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1067-1276
               

               
Cow position:
               
chr10:6436026-6436231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1067-1277
               

               
Cow position:
               
chr10:28395336-28395129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 112
               

               
Conread position:
               
1067-1278
               

               
Cow position:
               
chr10:39258529-39258315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
1067-1278
               

               
Cow position:
               
chr10:49146482-49146683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1067-1279
               

               
Cow position:
               
chr10:24871131-24871348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1067-1280
               

               
Cow position:
               
chr10:30352817-30353028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 45
               

               
Conread position:
               
1067-1281
               

               
Cow position:
               
chr10:20095727-20095946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
52, 126
               

               
Conread position:
               
1067-1281
               

               
Cow position:
               
chr10:27118996-27118784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
1067-1282
               

               
Cow position:
               
chr10:24004500-24004282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
114, 100
               

               
Conread position:
               
1067-1283
               

               
Cow position:
               
chr10:11282201-11281979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
1067-1283
               

               
Cow position:
               
chr10:13368318-13368539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 121
               

               
Conread position:
               
1067-1283
               

               
Cow position:
               
chr10:23340872-23341073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1067-1285
               

               
Cow position:
               
chr10:38995195-38995417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 213
               

               
Conread position:
               
1067-1288
               

               
Cow position:
               
chr10:37529297-37529088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1067-1289
               

               
Cow position:
               
chr10:5600040-5599811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
1067-1294
               

               
Cow position:
               
chr10:34661357-34661140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
155, 63
               

               
Conread position:
               
1067-1295
               

               
Cow position:
               
chr10:45337646-45337880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 99
               

               
Conread position:
               
1067-1296
               

               
Cow position:
               
chr10:43586318-43586088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 111
               

               
Conread position:
               
1068-1177
               

               
Cow position:
               
chr10:37768272-37768381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1068-1240
               

               
Cow position:
               
chr10:46886124-46886288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1068-1247
               

               
Cow position:
               
chr10:21422189-21422017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1068-1265
               

               
Cow position:
               
chr10:56828350-56828157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
1068-1266
               

               
Cow position:
               
chr10:53674793-53674991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
151, 110
               

               
Conread position:
               
1068-1268
               

               
Cow position:
               
chr10:35868048-35867851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
126, 47
               

               
Conread position:
               
1068-1274
               

               
Cow position:
               
chr10:2857015-2857219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
188, 72
               

               
Conread position:
               
1068-1275
               

               
Cow position:
               
chr10:7383646-7383444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1068-1275
               

               
Cow position:
               
chr10:52695759-52695555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1275
               

               
Cow position:
               
chr10:55600189-55599981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
124, 97
               

               
Conread position:
               
1068-1276
               

               
Cow position:
               
chr10:17022596-17022395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr10:5151314-5151527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
107, 63
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr10:35731557-35731353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr10:37068445-37068246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr10:48407105-48407308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr10:19191727-19191929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr10:32080242-32080443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr10:40163966-40163758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
102, 97
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr10:55733635-55733434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr10:62286524-62286742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1068-1281
               

               
Cow position:
               
chr10:2535539-2535741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
1068-1281
               

               
Cow position:
               
chr10:17149848-17150049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr10:7835619-7835414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr10:11112591-11112803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr10:21657394-21657592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr10:27716873-27716655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
118, 98
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr10:34655143-34654930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
36, 136
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr10:35981557-35981774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
104, 97
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr10:46849831-46850049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
118, 99
               

               
Conread position:
               
1068-1284
               

               
Cow position:
               
chr10:3364216-3364002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
1068-1284
               

               
Cow position:
               
chr10:24756379-24756590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1284
               

               
Cow position:
               
chr10:46327658-46327872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
1068-1285
               

               
Cow position:
               
chr10:2185317-2185540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
145, 45
               

               
Conread position:
               
1068-1285
               

               
Cow position:
               
chr10:14947229-14947436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1068-1285
               

               
Cow position:
               
chr10:41676444-41676233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
1068-1285
               

               
Cow position:
               
chr10:45371024-45371239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
132, 49
               

               
Conread position:
               
1068-1287
               

               
Cow position:
               
chr10:4184163-4184387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
124, 218
               

               
Conread position:
               
1068-1287
               

               
Cow position:
               
chr10:54504572-54504787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr10:11080931-11081158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr10:23346335-23346121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr10:33665810-33666030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
207, 129
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr10:39228115-39228348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
124, 221
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr10:60446699-60446915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
42, 121
               

               
Conread position:
               
1068-1289
               

               
Cow position:
               
chr10:23311060-23310839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
128, 45
               

               
Conread position:
               
1068-1289
               

               
Cow position:
               
chr10:30369855-30369638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
216, 110
               

               
Conread position:
               
1068-1289
               

               
Cow position:
               
chr10:54848749-54848965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
201, 44
               

               
Conread position:
               
1068-1292
               

               
Cow position:
               
chr10:65582413-65582638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
118, 41
               

               
Conread position:
               
1068-1293
               

               
Cow position:
               
chr10:34607529-34607756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
112, 98
               

               
Conread position:
               
1068-1293
               

               
Cow position:
               
chr10:35245979-35245763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
78, 84
               

               
Conread position:
               
1068-1294
               

               
Cow position:
               
chr10:38205743-38205526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1295
               

               
Cow position:
               
chr10:37426166-37425940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
213, 110
               

               
Conread position:
               
1068-1295
               

               
Cow position:
               
chr10:59571870-59572085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr10:2613336-2613560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr10:6384498-6384719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr10:7817075-7817313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
119, 199
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr10:8093349-8093129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr10:33215771-33215986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr10:49223881-49224111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 91
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr10:66199741-66199512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
103, 25
               

               
Conread position:
               
1069-1211
               

               
Cow position:
               
chr10:49947912-49947773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1069-1272
               

               
Cow position:
               
chr10:59462102-59462298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
1069-1275
               

               
Cow position:
               
chr10:47182600-47182393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1069-1276
               

               
Cow position:
               
chr10:16830418-16830210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
98, 129
               

               
Conread position:
               
1069-1277
               

               
Cow position:
               
chr10:443552-443747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1069-1277
               

               
Cow position:
               
chr10:17073397-17073192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 94
               

               
Conread position:
               
1069-1281
               

               
Cow position:
               
chr10:13765196-13764985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1069-1283
               

               
Cow position:
               
chr10:50109935-50109717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1069-1285
               

               
Cow position:
               
chr10:20447884-20448101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
1069-1288
               

               
Cow position:
               
chr10:22981010-22980793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
112, 102
               

               
Conread position:
               
1069-1288
               

               
Cow position:
               
chr10:36531761-36531539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1069-1290
               

               
Cow position:
               
chr10:16414599-16414387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1069-1292
               

               
Cow position:
               
chr10:23390346-23390128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
197, 107
               

               
Conread position:
               
1069-1293
               

               
Cow position:
               
chr10:10148617-10148839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
133, 109
               

               
Conread position:
               
1069-1293
               

               
Cow position:
               
chr10:50558956-50558738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
206, 109
               

               
Conread position:
               
1069-1296
               

               
Cow position:
               
chr10:60491296-60491069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
136, 70
               

               
Conread position:
               
1070-1273
               

               
Cow position:
               
chr10:33915096-33914897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1070-1278
               

               
Cow position:
               
chr10:60697654-60697453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1070-1282
               

               
Cow position:
               
chr10:55396007-55395799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
1070-1283
               

               
Cow position:
               
chr10:27178465-27178668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
204, 45
               

               
Conread position:
               
1070-1283
               

               
Cow position:
               
chr10:31534702-31534920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 112
               

               
Conread position:
               
1070-1283
               

               
Cow position:
               
chr10:57786308-57786517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 67
               

               
Conread position:
               
1070-1288
               

               
Cow position:
               
chr10:6489841-6490064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
132, 118
               

               
Conread position:
               
1070-1288
               

               
Cow position:
               
chr10:10027544-10027761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 41
               

               
Conread position:
               
1070-1294
               

               
Cow position:
               
chr10:22888844-22888626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1070-1294
               

               
Cow position:
               
chr10:48679297-48679073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
103, 85
               

               
Conread position:
               
1070-1294
               

               
Cow position:
               
chr10:51944333-51944551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
105, 46
               

               
Conread position:
               
1070-1295
               

               
Cow position:
               
chr10:34646477-34646264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
1070-1296
               

               
Cow position:
               
chr10:31027674-31027447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1070-1296
               

               
Cow position:
               
chr10:61922171-61921949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1071-1276
               

               
Cow position:
               
chr10:5784284-5784078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
141, 89
               

               
Conread position:
               
1071-1288
               

               
Cow position:
               
chr10:1054371-1054573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1071-1288
               

               
Cow position:
               
chr10:35791897-35792114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
172, 12
               

               
Conread position:
               
1072-1284
               

               
Cow position:
               
chr10:62919524-62919307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1073-1278
               

               
Cow position:
               
chr10:39622383-39622188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1073-1288
               

               
Cow position:
               
chr10:1978699-1978485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
195, 113
               

               
Conread position:
               
1073-1288
               

               
Cow position:
               
chr10:24096401-24096178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 115
               

               
Conread position:
               
1074-1294
               

               
Cow position:
               
chr10:46042967-46043187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
91, 69
               

               
Conread position:
               
1075-1277
               

               
Cow position:
               
chr10:62353437-62353632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
1075-1280
               

               
Cow position:
               
chr10:16093188-16093387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
1075-1283
               

               
Cow position:
               
chr10:58044157-58043946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
33, 106
               

               
Conread position:
               
1075-1285
               

               
Cow position:
               
chr10:61509969-61509765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1076-1273
               

               
Cow position:
               
chr10:46195761-46195951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1076-1282
               

               
Cow position:
               
chr10:11047230-11047025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
8, 103
               

               
Conread position:
               
1078-1257
               

               
Cow position:
               
chr10:32503404-32503586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1078-1275
               

               
Cow position:
               
chr10:55043665-55043467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
1078-1283
               

               
Cow position:
               
chr10:17077760-17077560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
1078-1288
               

               
Cow position:
               
chr10:10120170-10120372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 101
               

               
Conread position:
               
1079-1282
               

               
Cow position:
               
chr10:10829021-10829221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1079-1283
               

               
Cow position:
               
chr10:2985096-2984885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
6, 12
               

               
Conread position:
               
1079-1294
               

               
Cow position:
               
chr10:57059302-57059084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 11
               

               
Conread position:
               
1080-1211
               

               
Cow position:
               
chr10:41760341-41760211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1080-1268
               

               
Cow position:
               
chr10:30523083-30522898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1080-1282
               

               
Cow position:
               
chr10:37415769-37415962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1080-1283
               

               
Cow position:
               
chr10:65904225-65904421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
129, 19
               

               
Conread position:
               
1080-1288
               

               
Cow position:
               
chr10:3275954-3276153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1080-1288
               

               
Cow position:
               
chr10:49862449-49862650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
189, 35
               

               
Conread position:
               
1080-1288
               

               
Cow position:
               
chr10:64042064-64042270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
133, 80
               

               
Conread position:
               
1080-1291
               

               
Cow position:
               
chr10:49923394-49923173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
1080-1293
               

               
Cow position:
               
chr10:1996689-1996484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1080-1296
               

               
Cow position:
               
chr10:37818574-37818363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 19
               

               
Conread position:
               
1081-1285
               

               
Cow position:
               
chr10:11060548-11060349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 91
               

               
Conread position:
               
1083-1277
               

               
Cow position:
               
chr10:45295160-45294965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
121, 174
               

               
Conread position:
               
1083-1282
               

               
Cow position:
               
chr10:10152992-10153185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1083-1283
               

               
Cow position:
               
chr10:48377415-48377213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
115, 40
               

               
Conread position:
               
1083-1283
               

               
Cow position:
               
chr10:60237111-60236918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
193, 40
               

               
Conread position:
               
1083-1288
               

               
Cow position:
               
chr10:6718956-6719163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
71, 76
               

               
Conread position:
               
1083-1288
               

               
Cow position:
               
chr10:28223196-28223403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
116, 48
               

               
Conread position:
               
1083-1288
               

               
Cow position:
               
chr10:31005033-31004829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1083-1288
               

               
Cow position:
               
chr10:44771632-44771833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1083-1289
               

               
Cow position:
               
chr10:52296480-52296684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
186, 23
               

               
Conread position:
               
1083-1292
               

               
Cow position:
               
chr10:58149187-58148981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1083-1294
               

               
Cow position:
               
chr10:63484623-63484831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
198, 59
               

               
Conread position:
               
1083-1295
               

               
Cow position:
               
chr10:47159197-47159398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1083-1296
               

               
Cow position:
               
chr10:8853534-8853743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
84, 67
               

               
Conread position:
               
1083-1296
               

               
Cow position:
               
chr10:37014616-37014832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
113, 82
               

               
Conread position:
               
1083-1296
               

               
Cow position:
               
chr10:41132247-41132458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
193, 96
               

               
Conread position:
               
1084-1282
               

               
Cow position:
               
chr10:48316963-48316763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
1084-1282
               

               
Cow position:
               
chr10:49029638-49029828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1084-1283
               

               
Cow position:
               
chr10:19372353-19372153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
1084-1288
               

               
Cow position:
               
chr10:45871498-45871704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
1084-1295
               

               
Cow position:
               
chr10:38370471-38370256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
1084-1295
               

               
Cow position:
               
chr10:46934798-46934583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
1085-1267
               

               
Cow position:
               
chr10:37508163-37507987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1085-1268
               

               
Cow position:
               
chr10:58651202-58651027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1085-1278
               

               
Cow position:
               
chr10:19679082-19679281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1085-1282
               

               
Cow position:
               
chr10:53564136-53563937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1085-1285
               

               
Cow position:
               
chr10:34903463-34903655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1085-1286
               

               
Cow position:
               
chr10:40998840-40999041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
1085-1288
               

               
Cow position:
               
chr10:15817807-15817613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 31
               

               
Conread position:
               
1085-1293
               

               
Cow position:
               
chr10:43460068-43459865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1086-1247
               

               
Cow position:
               
chr10:52278709-52278869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
1086-1281
               

               
Cow position:
               
chr10:14541856-14542051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
89, 133
               

               
Conread position:
               
1086-1283
               

               
Cow position:
               
chr10:11966858-11966663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
1086-1283
               

               
Cow position:
               
chr10:59417250-59417057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1086-1284
               

               
Cow position:
               
chr10:22390582-22390779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
186, 100
               

               
Conread position:
               
1086-1296
               

               
Cow position:
               
chr10:6852251-6852456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
194, 29
               

               
Conread position:
               
1086-1296
               

               
Cow position:
               
chr10:24971341-24971137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1087-1296
               

               
Cow position:
               
chr10:14188624-14188423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1087-1296
               

               
Cow position:
               
chr10:55069195-55069399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
71, 77
               

               
Conread position:
               
1088-1289
               

               
Cow position:
               
chr10:34674005-34674202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
191, 83
               

               
Conread position:
               
1088-1289
               

               
Cow position:
               
chr10:44730492-44730287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1088-1294
               

               
Cow position:
               
chr10:33195029-33195238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
130, 83
               

               
Conread position:
               
1089-1288
               

               
Cow position:
               
chr10:31803493-31803292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
162, 97
               

               
Conread position:
               
1091-1268
               

               
Cow position:
               
chr10:57142225-57142038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1092-1289
               

               
Cow position:
               
chr10:28843349-28843549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 83
               

               
Conread position:
               
1093-1275
               

               
Cow position:
               
chr10:27136696-27136512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
114, 85
               

               
Conread position:
               
1093-1296
               

               
Cow position:
               
chr10:19503291-19503085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
120, 90
               

               
Conread position:
               
1096-1276
               

               
Cow position:
               
chr10:36856136-36855953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
86, 75
               

               
Conread position:
               
1096-1282
               

               
Cow position:
               
chr10:37375753-37375564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
1098-1287
               

               
Cow position:
               
chr10:31400901-31400714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
98, 144
               

               
Conread position:
               
1099-1273
               

               
Cow position:
               
chr10:15383325-15383501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
1099-1283
               

               
Cow position:
               
chr10:3985888-3986073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
93, 114
               

               
Conread position:
               
1099-1283
               

               
Cow position:
               
chr10:15602183-15601997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1099-1288
               

               
Cow position:
               
chr10:1698746-1698555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
83, 65
               

               
Conread position:
               
1099-1291
               

               
Cow position:
               
chr10:67443119-67442932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1099-1296
               

               
Cow position:
               
chr10:9959214-9959414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1100-1285
               

               
Cow position:
               
chr10:57095201-57095023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 80
               

               
Conread position:
               
1100-1289
               

               
Cow position:
               
chr10:18751476-18751289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
71, 80
               

               
Conread position:
               
1100-1295
               

               
Cow position:
               
chr10:39124132-39124327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
106, 85
               

               
Conread position:
               
1102-1296
               

               
Cow position:
               
chr10:16641930-16641732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
55, 79
               

               
Conread position:
               
1103-1294
               

               
Cow position:
               
chr10:8161506-8161699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1103-1296
               

               
Cow position:
               
chr10:60955513-60955318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
78, 67
               

               
Conread position:
               
1104-1283
               

               
Cow position:
               
chr10:4329994-4329812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
1104-1285
               

               
Cow position:
               
chr10:47429832-47430006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1105-1296
               

               
Cow position:
               
chr10:7089351-7089534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
1107-1288
               

               
Cow position:
               
chr10:9797904-9797724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
78, 58
               

               
Conread position:
               
1110-1285
               

               
Cow position:
               
chr10:25475542-25475715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1117-1283
               

               
Cow position:
               
chr10:14668414-14668579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1117-1295
               

               
Cow position:
               
chr10:61039135-61039314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
1122-1296
               

               
Cow position:
               
chr10:8891268-8891092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
75, 66
               

               
Conread position:
               
1124-1281
               

               
Cow position:
               
chr10:10104804-10104958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1124-1295
               

               
Cow position:
               
chr10:31202399-31202572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
1124-1295
               

               
Cow position:
               
chr10:35026728-35026899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
1134-1288
               

               
Cow position:
               
chr10:33694408-33694556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
141, 45
               

               
Conread position:
               
1140-1288
               

               
Cow position:
               
chr10:48130056-48130201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
1188-1296
               

               
Cow position:
               
chr10:52825087-52824980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1047-1296
               

               
Cow position:
               
chr11:56114893-56115141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
1048-1278
               

               
Cow position:
               
chr11:17676419-17676191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
1049-1288
               

               
Cow position:
               
chr11:17227686-17227458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1055-1282
               

               
Cow position:
               
chr11:77241668-77241890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1055-1288
               

               
Cow position:
               
chr11:4225058-4225280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1060-1281
               

               
Cow position:
               
chr11:49625951-49625728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 68
               

               
Conread position:
               
1062-1211
               

               
Cow position:
               
chr11:79019091-79018944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
1062-1282
               

               
Cow position:
               
chr11:47784742-47784968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1062-1296
               

               
Cow position:
               
chr11:18119470-18119705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 5
               

               
Conread position:
               
1063-1290
               

               
Cow position:
               
chr11:43914259-43914491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
6, 122
               

               
Conread position:
               
1064-1289
               

               
Cow position:
               
chr11:15017026-15017253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1065-1277
               

               
Cow position:
               
chr11:20205881-20205675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1066-1296
               

               
Cow position:
               
chr11:23407436-23407662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1067-1241
               

               
Cow position:
               
chr11:3393236-3393067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1067-1241
               

               
Cow position:
               
chr11:45646620-45646446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
1067-1246
               

               
Cow position:
               
chr11:31410905-31410728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1067-1262
               

               
Cow position:
               
chr11:11469675-11469488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1067-1265
               

               
Cow position:
               
chr11:34467543-34467733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
1067-1277
               

               
Cow position:
               
chr11:62812977-62812769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
194, 111
               

               
Conread position:
               
1067-1281
               

               
Cow position:
               
chr11:20238649-20238863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1067-1283
               

               
Cow position:
               
chr11:11558144-11558357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
107, 123
               

               
Conread position:
               
1067-1283
               

               
Cow position:
               
chr11:37804581-37804362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
129, 99
               

               
Conread position:
               
1067-1288
               

               
Cow position:
               
chr11:45619325-45619546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
118, 98
               

               
Conread position:
               
1067-1288
               

               
Cow position:
               
chr11:81300648-81300424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
135, 99
               

               
Conread position:
               
1067-1296
               

               
Cow position:
               
chr11:2788366-2788598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
114, 100
               

               
Conread position:
               
1067-1296
               

               
Cow position:
               
chr11:32254244-32254014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
109, 97
               

               
Conread position:
               
1068-1199
               

               
Cow position:
               
chr11:16342255-16342124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1068-1203
               

               
Cow position:
               
chr11:36329061-36328931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1203
               

               
Cow position:
               
chr11:44636780-44636648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1254
               

               
Cow position:
               
chr11:39499330-39499515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1068-1260
               

               
Cow position:
               
chr11:47772416-47772216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
128, 117
               

               
Conread position:
               
1068-1261
               

               
Cow position:
               
chr11:63435495-63435689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 44
               

               
Conread position:
               
1068-1262
               

               
Cow position:
               
chr11:34121172-34121363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
1068-1264
               

               
Cow position:
               
chr11:18851882-18852073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1068-1265
               

               
Cow position:
               
chr11:4637198-4637004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1265
               

               
Cow position:
               
chr11:77319388-77319583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1266
               

               
Cow position:
               
chr11:13043172-13042976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1068-1267
               

               
Cow position:
               
chr11:51729260-51729447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1268
               

               
Cow position:
               
chr11:17036554-17036358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1268
               

               
Cow position:
               
chr11:80564267-80564471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 110
               

               
Conread position:
               
1068-1273
               

               
Cow position:
               
chr11:42160080-42159883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1068-1273
               

               
Cow position:
               
chr11:48544407-48544615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 134
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr11:2917612-2917410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr11:18447518-18447318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr11:30843045-30842842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr11:80639576-80639369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr11:29960272-29960475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr11:35580234-35580445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr11:83032654-83032861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr11:83323537-83323761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 134
               

               
Conread position:
               
1068-1279
               

               
Cow position:
               
chr11:81135194-81134984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
1068-1280
               

               
Cow position:
               
chr11:27248467-27248674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:897647-897853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:4732316-4732534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:6642787-6643004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
118, 44
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:8496006-8496223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 92
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:33001938-33002157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
106, 98
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:35665589-35665369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
120, 94
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:40818654-40818444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:49152923-49153129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:55636252-55636035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
113, 76
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr11:63975103-63975323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 128
               

               
Conread position:
               
1068-1284
               

               
Cow position:
               
chr11:15382529-15382305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1068-1285
               

               
Cow position:
               
chr11:2900747-2900521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr11:3896725-3896505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr11:17721828-17721606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr11:39060628-39060411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr11:40608620-40608399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
136, 49
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr11:62789104-62789319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr11:69977944-69978160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
207, 114
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr11:75090245-75090024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
106, 98
               

               
Conread position:
               
1068-1289
               

               
Cow position:
               
chr11:83043389-83043172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1068-1290
               

               
Cow position:
               
chr11:30493970-30494184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1068-1291
               

               
Cow position:
               
chr11:63165673-63165454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1068-1292
               

               
Cow position:
               
chr11:259198-258979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
205, 115
               

               
Conread position:
               
1068-1292
               

               
Cow position:
               
chr11:41293844-41293606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
1068-1295
               

               
Cow position:
               
chr11:1067466-1067239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 202
               

               
Conread position:
               
1068-1295
               

               
Cow position:
               
chr11:63866685-63866462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr11:8437720-8437485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
120, 182
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr11:16314846-16315078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 129
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr11:34646563-34646797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr11:40794378-40794143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
124, 99
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr11:45435053-45435280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
27, 127
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr11:48296007-48296227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
219, 41
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr11:62620350-62620579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
139, 110
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr11:70304045-70304277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr11:80556196-80556421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
201, 47
               

               
Conread position:
               
1069-1265
               

               
Cow position:
               
chr11:42296645-42296456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
174, 109
               

               
Conread position:
               
1069-1268
               

               
Cow position:
               
chr11:26274982-26274792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1069-1277
               

               
Cow position:
               
chr11:30895029-30894820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
105, 135
               

               
Conread position:
               
1069-1277
               

               
Cow position:
               
chr11:67615271-67615069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1069-1278
               

               
Cow position:
               
chr11:65157434-65157221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1069-1279
               

               
Cow position:
               
chr11:13592710-13592924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
86, 93
               

               
Conread position:
               
1069-1282
               

               
Cow position:
               
chr11:67600759-67600966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1069-1283
               

               
Cow position:
               
chr11:25119956-25119748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1069-1288
               

               
Cow position:
               
chr11:30830640-30830430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
7, 121
               

               
Conread position:
               
1069-1290
               

               
Cow position:
               
chr11:50152839-50152617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
1070-1280
               

               
Cow position:
               
chr11:18698855-18699057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
198, 112
               

               
Conread position:
               
1070-1283
               

               
Cow position:
               
chr11:30867159-30867365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
1070-1283
               

               
Cow position:
               
chr11:46922910-46922698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
103, 110
               

               
Conread position:
               
1070-1287
               

               
Cow position:
               
chr11:80923345-80923131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
1070-1289
               

               
Cow position:
               
chr11:27746899-27747114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
205, 118
               

               
Conread position:
               
1070-1294
               

               
Cow position:
               
chr11:2575928-2575709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
199, 143
               

               
Conread position:
               
1070-1294
               

               
Cow position:
               
chr11:35213192-35212971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
142, 108
               

               
Conread position:
               
1070-1296
               

               
Cow position:
               
chr11:1932516-1932287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
79, 215
               

               
Conread position:
               
1070-1296
               

               
Cow position:
               
chr11:27405094-27404869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
117, 46
               

               
Conread position:
               
1070-1296
               

               
Cow position:
               
chr11:30172285-30172503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
210, 29
               

               
Conread position:
               
1071-1288
               

               
Cow position:
               
chr11:37425171-37424954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
169, 44
               

               
Conread position:
               
1071-1294
               

               
Cow position:
               
chr11:15772741-15772513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 104
               

               
Conread position:
               
1073-1278
               

               
Cow position:
               
chr11:35153845-35153636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
123, 162
               

               
Conread position:
               
1073-1278
               

               
Cow position:
               
chr11:52297242-52297039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1073-1278
               

               
Cow position:
               
chr11:74316688-74316890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1073-1283
               

               
Cow position:
               
chr11:49872906-49872698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
126, 42
               

               
Conread position:
               
1073-1288
               

               
Cow position:
               
chr11:71021979-71022195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
165, 139
               

               
Conread position:
               
1073-1296
               

               
Cow position:
               
chr11:62239723-62239943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1074-1283
               

               
Cow position:
               
chr11:67614942-67614736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1074-1289
               

               
Cow position:
               
chr11:52380892-52380678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
1075-1261
               

               
Cow position:
               
chr11:5201671-5201479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
100, 180
               

               
Conread position:
               
1075-1274
               

               
Cow position:
               
chr11:8525132-8524938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1075-1278
               

               
Cow position:
               
chr11:65762610-65762401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 197
               

               
Conread position:
               
1075-1283
               

               
Cow position:
               
chr11:17889750-17889538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 81
               

               
Conread position:
               
1075-1295
               

               
Cow position:
               
chr11:31227943-31228154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1075-1296
               

               
Cow position:
               
chr11:46884354-46884577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 85
               

               
Conread position:
               
1076-1294
               

               
Cow position:
               
chr11:36520856-36521080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
1077-1293
               

               
Cow position:
               
chr11:63999109-63998892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
114, 200
               

               
Conread position:
               
1079-1296
               

               
Cow position:
               
chr11:36092932-36092716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
1080-1266
               

               
Cow position:
               
chr11:17083324-17083141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
160, 98
               

               
Conread position:
               
1080-1276
               

               
Cow position:
               
chr11:33409276-33409084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
1080-1279
               

               
Cow position:
               
chr11:72292538-72292746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1080-1283
               

               
Cow position:
               
chr11:2907537-2907345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1080-1288
               

               
Cow position:
               
chr11:905397-905190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
165, 98
               

               
Conread position:
               
1080-1288
               

               
Cow position:
               
chr11:30964331-30964536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
1080-1294
               

               
Cow position:
               
chr11:3175659-3175871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
195, 108
               

               
Conread position:
               
1080-1295
               

               
Cow position:
               
chr11:44031997-44032208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
199, 98
               

               
Conread position:
               
1080-1296
               

               
Cow position:
               
chr11:63478363-63478567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
189, 49
               

               
Conread position:
               
1080-1296
               

               
Cow position:
               
chr11:70206306-70206517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1082-1265
               

               
Cow position:
               
chr11:45872323-45872139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 85
               

               
Conread position:
               
1082-1283
               

               
Cow position:
               
chr11:32710502-32710704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
104, 88
               

               
Conread position:
               
1082-1283
               

               
Cow position:
               
chr11:36058784-36058988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 114
               

               
Conread position:
               
1082-1283
               

               
Cow position:
               
chr11:45350524-45350320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
116, 85
               

               
Conread position:
               
1082-1283
               

               
Cow position:
               
chr11:54428607-54428810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
1082-1284
               

               
Cow position:
               
chr11:58594400-58594195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
117, 88
               

               
Conread position:
               
1082-1288
               

               
Cow position:
               
chr11:29308568-29308777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
1082-1296
               

               
Cow position:
               
chr11:5075240-5075024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
193, 85
               

               
Conread position:
               
1082-1296
               

               
Cow position:
               
chr11:6857716-6857936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 118
               

               
Conread position:
               
1082-1296
               

               
Cow position:
               
chr11:36940608-36940392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
99, 85
               

               
Conread position:
               
1083-1278
               

               
Cow position:
               
chr11:25603936-25604137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
1083-1279
               

               
Cow position:
               
chr11:68913129-68913328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 72
               

               
Conread position:
               
1083-1288
               

               
Cow position:
               
chr11:19592006-19591803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
92, 81
               

               
Conread position:
               
1083-1288
               

               
Cow position:
               
chr11:37100180-37099978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
1083-1290
               

               
Cow position:
               
chr11:86895365-86895568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1083-1294
               

               
Cow position:
               
chr11:41438198-41437985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 110
               

               
Conread position:
               
1083-1294
               

               
Cow position:
               
chr11:53773670-53773883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 83
               

               
Conread position:
               
1083-1296
               

               
Cow position:
               
chr11:40395428-40395640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
189, 81
               

               
Conread position:
               
1083-1296
               

               
Cow position:
               
chr11:52132833-52132620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 73
               

               
Conread position:
               
1084-1273
               

               
Cow position:
               
chr11:29782154-29782336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
1084-1281
               

               
Cow position:
               
chr11:2484805-2484608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
1084-1288
               

               
Cow position:
               
chr11:30165499-30165705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1084-1296
               

               
Cow position:
               
chr11:2084133-2084346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
108, 204
               

               
Conread position:
               
1085-1295
               

               
Cow position:
               
chr11:1625233-1625022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 80
               

               
Conread position:
               
1085-1295
               

               
Cow position:
               
chr11:48315406-48315197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
206, 94
               

               
Conread position:
               
1086-1277
               

               
Cow position:
               
chr11:30986633-30986819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1086-1289
               

               
Cow position:
               
chr11:27462106-27461916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1088-1295
               

               
Cow position:
               
chr11:12555312-12555101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1089-1283
               

               
Cow position:
               
chr11:66685911-66685722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 100
               

               
Conread position:
               
1090-1275
               

               
Cow position:
               
chr11:6256007-6255828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1090-1288
               

               
Cow position:
               
chr11:57767186-57767385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
1090-1296
               

               
Cow position:
               
chr11:77013777-77013971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
1091-1285
               

               
Cow position:
               
chr11:42206418-42206606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1092-1276
               

               
Cow position:
               
chr11:30192176-30192360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
100, 154
               

               
Conread position:
               
1093-1296
               

               
Cow position:
               
chr11:58472247-58472451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
83, 74
               

               
Conread position:
               
1096-1283
               

               
Cow position:
               
chr11:38226244-38226433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 68
               

               
Conread position:
               
1096-1288
               

               
Cow position:
               
chr11:80008066-80007869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
1096-1289
               

               
Cow position:
               
chr11:58185884-58186068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
173, 69
               

               
Conread position:
               
1097-1288
               

               
Cow position:
               
chr11:26442502-26442309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 67
               

               
Conread position:
               
1102-1268
               

               
Cow position:
               
chr11:15279005-15278844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1102-1296
               

               
Cow position:
               
chr11:18924753-18924948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
1103-1282
               

               
Cow position:
               
chr11:80296844-80296671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1106-1276
               

               
Cow position:
               
chr11:4621419-4621253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1106-1296
               

               
Cow position:
               
chr11:4411857-4411670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
149, 73
               

               
Conread position:
               
1107-1288
               

               
Cow position:
               
chr11:74839623-74839797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1108-1285
               

               
Cow position:
               
chr11:42066878-42067054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
1109-1295
               

               
Cow position:
               
chr11:53651655-53651840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 135
               

               
Conread position:
               
1109-1296
               

               
Cow position:
               
chr11:33369165-33369355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
1109-1296
               

               
Cow position:
               
chr11:36847182-36847370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 55
               

               
Conread position:
               
1113-1285
               

               
Cow position:
               
chr11:81928489-81928322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
130, 52
               

               
Conread position:
               
1117-1277
               

               
Cow position:
               
chr11:30857060-30857218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
1117-1287
               

               
Cow position:
               
chr11:54872737-54872567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
1117-1291
               

               
Cow position:
               
chr11:44615145-44614969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
1117-1296
               

               
Cow position:
               
chr11:7617184-7617008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
1119-1288
               

               
Cow position:
               
chr11:15591450-15591286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1123-1292
               

               
Cow position:
               
chr11:51683244-51683416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
1124-1292
               

               
Cow position:
               
chr11:17369560-17369725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
162, 47
               

               
Conread position:
               
1125-1296
               

               
Cow position:
               
chr11:65431549-65431717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1126-1261
               

               
Cow position:
               
chr11:85986018-85985882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 54
               

               
Conread position:
               
1130-1277
               

               
Cow position:
               
chr11:6784245-6784388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
1131-1277
               

               
Cow position:
               
chr11:12768435-12768579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1133-1288
               

               
Cow position:
               
chr11:81340502-81340348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
141, 64
               

               
Conread position:
               
1134-1296
               

               
Cow position:
               
chr11:70821084-70821248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
1135-1296
               

               
Cow position:
               
chr11:55911606-55911447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
1138-1288
               

               
Cow position:
               
chr11:63977101-63977249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1139-1294
               

               
Cow position:
               
chr11:32587079-32586927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1141-1293
               

               
Cow position:
               
chr11:38739060-38738910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1028-1276
               

               
Cow position:
               
chr12:24167032-24166789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 151
               

               
Conread position:
               
1031-1288
               

               
Cow position:
               
chr12:6480556-6480814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
1048-1283
               

               
Cow position:
               
chr12:33976132-33976370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
1051-1277
               

               
Cow position:
               
chr12:36261625-36261855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
1053-1285
               

               
Cow position:
               
chr12:24437698-24437464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
9, 225
               

               
Conread position:
               
1060-1283
               

               
Cow position:
               
chr12:36118909-36119136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
1061-1283
               

               
Cow position:
               
chr12:26356767-26356540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 107
               

               
Conread position:
               
1061-1288
               

               
Cow position:
               
chr12:29057335-29057562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
135, 125
               

               
Conread position:
               
1061-1296
               

               
Cow position:
               
chr12:7110143-7110391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
114, 124
               

               
Conread position:
               
1063-1268
               

               
Cow position:
               
chr12:48415571-48415368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 115
               

               
Conread position:
               
1063-1296
               

               
Cow position:
               
chr12:29675197-29674957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
1066-1296
               

               
Cow position:
               
chr12:23714626-23714853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
210, 112
               

               
Conread position:
               
1067-1248
               

               
Cow position:
               
chr12:37770829-37770998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1067-1266
               

               
Cow position:
               
chr12:42879646-42879849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1067-1273
               

               
Cow position:
               
chr12:24181101-24181299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1067-1283
               

               
Cow position:
               
chr12:9710256-9710038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 100
               

               
Conread position:
               
1067-1284
               

               
Cow position:
               
chr12:5554382-5554168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
208, 112
               

               
Conread position:
               
1067-1289
               

               
Cow position:
               
chr12:19502476-19502239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1067-1296
               

               
Cow position:
               
chr12:9766925-9766702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1067-1296
               

               
Cow position:
               
chr12:12232835-12233062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
1067-1296
               

               
Cow position:
               
chr12:35368594-35368826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 107
               

               
Conread position:
               
1068-1265
               

               
Cow position:
               
chr12:15122277-15122474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
1068-1273
               

               
Cow position:
               
chr12:26575849-26576049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1068-1276
               

               
Cow position:
               
chr12:18513975-18513766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
77, 12
               

               
Conread position:
               
1068-1276
               

               
Cow position:
               
chr12:45039060-45039267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 114
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr12:5459202-5459411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr12:6410782-6410575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
62, 162
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr12:17879348-17879144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1068-1277
               

               
Cow position:
               
chr12:45092399-45092601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
174, 110
               

               
Conread position:
               
1068-1278
               

               
Cow position:
               
chr12:11525641-11525429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
86, 128
               

               
Conread position:
               
1068-1279
               

               
Cow position:
               
chr12:15089469-15089679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1068-1280
               

               
Cow position:
               
chr12:42160606-42160392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
106, 98
               

               
Conread position:
               
1068-1282
               

               
Cow position:
               
chr12:29895359-29895577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
85, 118
               

               
Conread position:
               
1068-1282
               

               
Cow position:
               
chr12:30745674-30745882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
1068-1282
               

               
Cow position:
               
chr12:30946696-30946913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 120
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr12:9065508-9065727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 125
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr12:11860653-11860870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr12:19508606-19508396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
208, 98
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr12:31925805-31926023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
106, 98
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr12:34029174-34028957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
118, 98
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr12:42181176-42180960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
132, 110
               

               
Conread position:
               
1068-1283
               

               
Cow position:
               
chr12:42631085-42630867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
106, 98
               

               
Conread position:
               
1068-1286
               

               
Cow position:
               
chr12:15429643-15429426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 175
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr12:1998848-1998623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr12:4719900-4720118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
208, 97
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr12:12637230-12637011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 97
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr12:17031569-17031780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
195, 29
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr12:25805178-25804974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr12:37169993-37169777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
1068-1288
               

               
Cow position:
               
chr12:43974246-43974465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
102, 44
               

               
Conread position:
               
1068-1289
               

               
Cow position:
               
chr12:17252245-17252028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
211, 32
               

               
Conread position:
               
1068-1289
               

               
Cow position:
               
chr12:19261148-19261370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
140, 106
               

               
Conread position:
               
1068-1289
               

               
Cow position:
               
chr12:24663067-24663291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 197
               

               
Conread position:
               
1068-1292
               

               
Cow position:
               
chr12:9143340-9143562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
132, 118
               

               
Conread position:
               
1068-1295
               

               
Cow position:
               
chr12:16605720-16605490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 101
               

               
Conread position:
               
1068-1295
               

               
Cow position:
               
chr12:18123622-18123844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr12:6241272-6241507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr12:11659881-11660106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
150, 62
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr12:17269755-17269983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
194, 110
               

               
Conread position:
               
1068-1296
               

               
Cow position:
               
chr12:39746359-39746594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
120, 94
               

               
Conread position:
               
1069-1211
               

               
Cow position:
               
chr12:27037496-27037356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1069-1268
               

               
Cow position:
               
chr12:15703543-15703343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
105, 48
               

               
Conread position:
               
1069-1272
               

               
Cow position:
               
chr12:26777235-26777037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
201, 51
               

               
Conread position:
               
1069-1277
               

               
Cow position:
               
chr12:2734955-2734750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
1069-1277
               

               
Cow position:
               
chr12:18583038-18582838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1069-1283
               

               
Cow position:
               
chr12:20776967-20776762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
112, 46
               

               
Conread position:
               
1069-1283
               

               
Cow position:
               
chr12:34333064-34333283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 93
               

               
Conread position:
               
1069-1283
               

               
Cow position:
               
chr12:43474714-43474926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
207, 91
               

               
Conread position:
               
1069-1286
               

               
Cow position:
               
chr12:36544689-36544477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
1069-1288
               

               
Cow position:
               
chr12:6188160-6187937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1069-1288
               

               
Cow position:
               
chr12:7884727-7884507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
142, 110
               

               
Conread position:
               
1069-1296
               

               
Cow position:
               
chr12:10942241-10942474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1070-1274
               

               
Cow position:
               
chr12:33948859-33949058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
1070-1278
               

               
Cow position:
               
chr12:17080215-17080428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1070-1284
               

               
Cow position:
               
chr12:14986704-14986914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1070-1285
               

               
Cow position:
               
chr12:18518628-18518842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
199, 108
               
1070-1288UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr12:16670222-16670438 (view  custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
104, 95
               
1070-1288UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr12:42784264-42784479 (view  custom track)

               
               
               
Alignm length:
222

               
               
               
Alignm identity:
154

               
               
               
Alignm E-value:
9e-25

               
               
               
Alignm gaps (pig, cow):
50, 111
1070-1295UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr12:37514326-37514103 (view  custom track)

               
               
               
Alignm length:
230

               
               
               
Alignm identity:
157

               
               
               
Alignm E-value:
7e-23

               
               
               
Alignm gaps (pig, cow):
165, 108

               
               
               Conread position:1070-1296
               
               
               Cow position:chr12:25561325-25561544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1071-1210
               
               
               Cow position:chr12:27572284-27572147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1071-1283
               
               
               Cow position:chr12:33298137-33298352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:1071-1288
               
               
               Cow position:chr12:19061550-19061336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1074-1296
               
               
               Cow position:chr12:20356847-20356633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:1075-1273
               
               
               Cow position:chr12:5635493-5635295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 103

               
               
               Conread position:1075-1296
               
               
               Cow position:chr12:40881950-40881745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1079-1254
               
               
               Cow position:chr12:28748906-28749082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:1079-1296
               
               
               Cow position:chr12:33129218-33129434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1080-1273
               
               
               Cow position:chr12:32169506-32169703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:1080-1277
               
               
               Cow position:chr12:29731279-29731472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr12:24032461-24032655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1080-1288
               
               
               Cow position:chr12:41159555-41159755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):195, 39

               
               
               Conread position:1080-1294
               
               
               Cow position:chr12:22285157-22284944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:1082-1283
               
               
               Cow position:chr12:42924146-42923943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1284
               
               
               Cow position:chr12:43788993-43789195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:1083-1288
               
               
               Cow position:chr12:39150084-39149875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1083-1289
               
               
               Cow position:chr12:38774275-38774070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):197, 105

               
               
               Conread position:1083-1296
               
               
               Cow position:chr12:1889610-1889400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):185, 111

               
               
               Conread position:1083-1296
               
               
               Cow position:chr12:31547565-31547781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):75, 70

               
               
               Conread position:1084-1277
               
               
               Cow position:chr12:26217855-26217666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1084-1283
               
               
               Cow position:chr12:11587743-11587936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 88

               
               
               Conread position:1084-1283
               
               
               Cow position:chr12:21780131-21780330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 187

               
               
               Conread position:1084-1285
               
               
               Cow position:chr12:48578812-48579003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1084-1295
               
               
               Cow position:chr12:25456377-25456598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 212

               
               
               Conread position:1084-1296
               
               
               Cow position:chr12:6206300-6206514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:1085-1264
               
               
               Cow position:chr12:44861290-44861109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1085-1281
               
               
               Cow position:chr12:29316492-29316297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):71, 142

               
               
               Conread position:1085-1282
               
               
               Cow position:chr12:3371572-3371384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1085-1282
               
               
               Cow position:chr12:29180643-29180839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:1085-1283
               
               
               Cow position:chr12:5135203-5135400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:1085-1283
               
               
               Cow position:chr12:43854864-43855055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1085-1285
               
               
               Cow position:chr12:2964020-2964214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1085-1296
               
               
               Cow position:chr12:40910319-40910108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:1088-1296
               
               
               Cow position:chr12:41989712-41989501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:1090-1268
               
               
               Cow position:chr12:4512475-4512299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1090-1296
               
               
               Cow position:chr12:7902824-7902626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1091-1286
               
               
               Cow position:chr12:1952826-1952635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1093-1288
               
               
               Cow position:chr12:9866786-9866588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1096-1291
               
               
               Cow position:chr12:22047905-22048099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:1096-1296
               
               
               Cow position:chr12:6958200-6958401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):187, 84

               
               
               Conread position:1099-1277
               
               
               Cow position:chr12:19272705-19272529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1099-1288
               
               
               Cow position:chr12:25528576-25528390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1099-1295
               
               
               Cow position:chr12:38679033-38679226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1099-1295
               
               
               Cow position:chr12:43551238-43551036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1099-1296
               
               
               Cow position:chr12:45782210-45782405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:1103-1293
               
               
               Cow position:chr12:17490203-17490390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 44

               
               
               Conread position:1103-1295
               
               
               Cow position:chr12:583522-583326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 189

               
               
               Conread position:1107-1273
               
               
               Cow position:chr12:33851349-33851513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1108-1288
               
               
               Cow position:chr12:1089400-1089218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:1109-1295
               
               
               Cow position:chr12:17254135-17254320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:1110-1283
               
               
               Cow position:chr12:8842303-8842127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:1111-1295
               
               
               Cow position:chr12:41684503-41684683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 53

               
               
               Conread position:1117-1295
               
               
               Cow position:chr12:46106792-46106968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:1119-1294
               
               
               Cow position:chr12:2835407-2835582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 152

               
               
               Conread position:1123-1283
               
               
               Cow position:chr12:20637528-20637371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1126-1296
               
               
               Cow position:chr12:8710994-8711161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1133-1296
               
               
               Cow position:chr12:44892225-44892388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:1134-1283
               
               
               Cow position:chr12:38165522-38165374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1140-1282
               
               
               Cow position:chr12:10611684-10611823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1144-1292
               
               
               Cow position:chr12:3579513-3579660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1019-1285
               
               
               Cow position:chr13:37554834-37555091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:1039-1296
               
               
               Cow position:chr13:18098525-18098262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:1050-1296
               
               
               Cow position:chr13:151975-151737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):229, 136

               
               
               Conread position:1051-1265
               
               
               Cow position:chr13:6926528-6926311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:1055-1278
               
               
               Cow position:chr13:12670444-12670666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:1056-1283
               
               
               Cow position:chr13:35526195-35526413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):145, 78

               
               
               Conread position:1061-1266
               
               
               Cow position:chr13:18340534-18340328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:1061-1278
               
               
               Cow position:chr13:42200620-42200406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1066-1273
               
               
               Cow position:chr13:13320793-13320588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1067-1266
               
               
               Cow position:chr13:4404527-4404332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:1067-1268
               
               
               Cow position:chr13:46329611-46329807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1277
               
               
               Cow position:chr13:26698505-26698710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1067-1279
               
               
               Cow position:chr13:55674213-55674425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1067-1285
               
               
               Cow position:chr13:42114014-42113793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1067-1288
               
               
               Cow position:chr13:52477654-52477868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1067-1294
               
               
               Cow position:chr13:55494531-55494748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1294
               
               
               Cow position:chr13:57985943-57986160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1295
               
               
               Cow position:chr13:21275854-21275625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):125, 167

               
               
               Conread position:1067-1296
               
               
               Cow position:chr13:38329611-38329386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1187
               
               
               Cow position:chr13:15233920-15233801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 103

               
               
               Conread position:1068-1215
               
               
               Cow position:chr13:20706211-20706356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr13:20288329-20288136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr13:35557117-35557315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr13:19022264-19022055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 5

               
               
               Conread position:1068-1275
               
               
               Cow position:chr13:15257375-15257578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 62

               
               
               Conread position:1068-1275
               
               
               Cow position:chr13:19279088-19278884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:1068-1275
               
               
               Cow position:chr13:19598671-19598876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr13:20784584-20784383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr13:19883043-19883248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr13:21107133-21106929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):150, 28

               
               
               Conread position:1068-1278
               
               
               Cow position:chr13:34281669-34281467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):126, 47

               
               
               Conread position:1068-1278
               
               
               Cow position:chr13:46525435-46525643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:1068-1278
               
               
               Cow position:chr13:47007725-47007927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr13:17114385-17114598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):107, 91

               
               
               Conread position:1068-1280
               
               
               Cow position:chr13:15083652-15083445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):124, 5

               
               
               Conread position:1068-1281
               
               
               Cow position:chr13:17292142-17292345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr13:18058256-18058464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr13:34261228-34261016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:1068-1282
               
               
               Cow position:chr13:41806766-41806558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr13:8450324-8450114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr13:31581742-31581958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 97

               
               
               Conread position:1068-1283
               
               
               Cow position:chr13:45130508-45130296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):208, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr13:62008101-62007888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1284
               
               
               Cow position:chr13:6974155-6973942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr13:7059456-7059236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):108, 99

               
               
               Conread position:1068-1285
               
               
               Cow position:chr13:28440544-28440754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):143, 47

               
               
               Conread position:1068-1285
               
               
               Cow position:chr13:37614196-37614418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:1068-1285
               
               
               Cow position:chr13:54582866-54582654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr13:15659273-15659051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):111, 98

               
               
               Conread position:1068-1288
               
               
               Cow position:chr13:84572-84364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):206, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr13:3209326-3209547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 119

               
               
               Conread position:1068-1288
               
               
               Cow position:chr13:11933609-11933829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:1068-1288
               
               
               Cow position:chr13:20473688-20473897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr13:37621366-37621599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:1068-1294
               
               
               Cow position:chr13:15288931-15289149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr13:5671592-5671817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr13:10924927-10925154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):124, 111

               
               
               Conread position:1068-1295
               
               
               Cow position:chr13:13260994-13260760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:1068-1295
               
               
               Cow position:chr13:28536328-28536554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:1068-1295
               
               
               Cow position:chr13:36877054-36876835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 5

               
               
               Conread position:1068-1295
               
               
               Cow position:chr13:45439516-45439298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):200, 62

               
               
               Conread position:1068-1295
               
               
               Cow position:chr13:49022874-49023097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr13:54389027-54389247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr13:14878957-14879188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 120

               
               
               Conread position:1068-1296
               
               
               Cow position:chr13:15997028-15996803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 91

               
               
               Conread position:1068-1296
               
               
               Cow position:chr13:17569108-17569329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr13:20154993-20154768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:1068-1296
               
               
               Cow position:chr13:21170522-21170296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:1068-1296
               
               
               Cow position:chr13:21980982-21981202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr13:27550733-27550499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr13:38283984-38284202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:1068-1296
               
               
               Cow position:chr13:60509126-60509356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 97

               
               
               Conread position:1069-1241
               
               
               Cow position:chr13:23479023-23478851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1069-1261
               
               
               Cow position:chr13:11808567-11808384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1069-1275
               
               
               Cow position:chr13:2776281-2776073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):130, 102

               
               
               Conread position:1069-1278
               
               
               Cow position:chr13:18166725-18166518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:1069-1278
               
               
               Cow position:chr13:26261795-26262006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):86, 98

               
               
               Conread position:1069-1279
               
               
               Cow position:chr13:14645044-14644838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:1069-1283
               
               
               Cow position:chr13:8374780-8374979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr13:14576206-14575995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):86, 93

               
               
               Conread position:1069-1283
               
               
               Cow position:chr13:20820836-20821056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:1069-1283
               
               
               Cow position:chr13:38035828-38035620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr13:47675942-47676156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:1069-1288
               
               
               Cow position:chr13:14063528-14063744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr13:17089526-17089736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 110

               
               
               Conread position:1069-1288
               
               
               Cow position:chr13:25504525-25504312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):174, 109

               
               
               Conread position:1069-1290
               
               
               Cow position:chr13:49503539-49503764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1069-1293
               
               
               Cow position:chr13:19007923-19007712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):210, 40

               
               
               Conread position:1069-1296
               
               
               Cow position:chr13:15993379-15993152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):95, 73

               
               
               Conread position:1069-1296
               
               
               Cow position:chr13:17611559-17611785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):199, 109

               
               
               Conread position:1069-1296
               
               
               Cow position:chr13:21288092-21288316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr13:43480051-43479828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:1070-1241
               
               
               Cow position:chr13:20666397-20666563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1264
               
               
               Cow position:chr13:24369573-24369385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1070-1273
               
               
               Cow position:chr13:15757112-15756907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 73

               
               
               Conread position:1070-1277
               
               
               Cow position:chr13:58763626-58763822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1281
               
               
               Cow position:chr13:25817518-25817312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1070-1283
               
               
               Cow position:chr13:18852070-18851869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:1070-1289
               
               
               Cow position:chr13:20314630-20314850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):117, 108

               
               
               Conread position:1070-1290
               
               
               Cow position:chr13:19610575-19610791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):199, 46

               
               
               Conread position:1070-1295
               
               
               Cow position:chr13:19393283-19393064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):199, 53

               
               
               Conread position:1070-1295
               
               
               Cow position:chr13:21135909-21136140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):58, 218

               
               
               Conread position:1070-1295
               
               
               Cow position:chr13:54702178-54701951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 172

               
               
               Conread position:1071-1276
               
               
               Cow position:chr13:21242093-21242288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1071-1284
               
               
               Cow position:chr13:16714276-16714489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:1072-1288
               
               
               Cow position:chr13:24094327-24094542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:1073-1268
               
               
               Cow position:chr13:971909-972101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1073-1296
               
               
               Cow position:chr13:57770000-57770215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1074-1295
               
               
               Cow position:chr13:13283335-13283108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:1075-1276
               
               
               Cow position:chr13:52057544-52057347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1075-1283
               
               
               Cow position:chr13:22122700-22122488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:1075-1285
               
               
               Cow position:chr13:49283793-49283999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1075-1288
               
               
               Cow position:chr13:13196226-13196014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):193, 111

               
               
               Conread position:1075-1290
               
               
               Cow position:chr13:24160440-24160222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:1075-1294
               
               
               Cow position:chr13:12974801-12974587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):166, 102

               
               
               Conread position:1075-1296
               
               
               Cow position:chr13:14927247-14927023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:1075-1296
               
               
               Cow position:chr13:15239527-15239742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):181, 46

               
               
               Conread position:1075-1296
               
               
               Cow position:chr13:53850811-53850588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):121, 112

               
               
               Conread position:1076-1295
               
               
               Cow position:chr13:17223310-17223090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:1078-1283
               
               
               Cow position:chr13:12045356-12045566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:1078-1288
               
               
               Cow position:chr13:11103215-11103434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1078-1295
               
               
               Cow position:chr13:33854700-33854911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1080-1208
               
               
               Cow position:chr13:21188350-21188224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1267
               
               
               Cow position:chr13:20217416-20217601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1080-1273
               
               
               Cow position:chr13:24586025-24585839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1080-1281
               
               
               Cow position:chr13:52055610-52055810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):117, 98

               
               
               Conread position:1080-1283
               
               
               Cow position:chr13:22601713-22601905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1080-1284
               
               
               Cow position:chr13:11565819-11565617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):198, 98

               
               
               Conread position:1080-1287
               
               
               Cow position:chr13:21277485-21277682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):199, 98

               
               
               Conread position:1080-1288
               
               
               Cow position:chr13:21235689-21235890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1295
               
               
               Cow position:chr13:23667235-23667026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chr13:4417091-4416888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 74

               
               
               Conread position:1082-1283
               
               
               Cow position:chr13:17451076-17450872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):91, 84

               
               
               Conread position:1082-1283
               
               
               Cow position:chr13:41190085-41189881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):98, 85

               
               
               Conread position:1082-1288
               
               
               Cow position:chr13:37775227-37775431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):194, 83

               
               
               Conread position:1082-1295
               
               
               Cow position:chr13:45499209-45499000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1082-1296
               
               
               Cow position:chr13:773336-773121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):194, 111

               
               
               Conread position:1082-1296
               
               
               Cow position:chr13:10220941-10220726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):85, 100

               
               
               Conread position:1082-1296
               
               
               Cow position:chr13:17845468-17845254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1296
               
               
               Cow position:chr13:43183229-43183009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:1083-1282
               
               
               Cow position:chr13:17813450-17813253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr13:9707770-9707966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):158, 67

               
               
               Conread position:1083-1283
               
               
               Cow position:chr13:34532953-34533148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 81

               
               
               Conread position:1083-1285
               
               
               Cow position:chr13:55765199-55765397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:1083-1285
               
               
               Cow position:chr13:55775338-55775143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):180, 9

               
               
               Conread position:1083-1287
               
               
               Cow position:chr13:18197629-18197830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr13:20879845-20880051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:1083-1288
               
               
               Cow position:chr13:30315486-30315276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr13:45353010-45352801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):115, 88

               
               
               Conread position:1083-1289
               
               
               Cow position:chr13:16038307-16038509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):72, 91

               
               
               Conread position:1083-1289
               
               
               Cow position:chr13:49356070-49356274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 81

               
               
               Conread position:1083-1290
               
               
               Cow position:chr13:16908196-16907989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):109, 194

               
               
               Conread position:1084-1278
               
               
               Cow position:chr13:46516039-46515845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 160

               
               
               Conread position:1084-1279
               
               
               Cow position:chr13:3153728-3153532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):83, 91

               
               
               Conread position:1084-1287
               
               
               Cow position:chr13:10522912-10522715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):195, 28

               
               
               Conread position:1084-1288
               
               
               Cow position:chr13:30148585-30148778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1084-1288
               
               
               Cow position:chr13:40491193-40490991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):195, 81

               
               
               Conread position:1084-1295
               
               
               Cow position:chr13:9124902-9124695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):192, 56

               
               
               Conread position:1084-1295
               
               
               Cow position:chr13:37592968-37593177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:1084-1295
               
               
               Cow position:chr13:37985766-37985978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 203

               
               
               Conread position:1084-1296
               
               
               Cow position:chr13:13796833-13797052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:1084-1296
               
               
               Cow position:chr13:50646653-50646862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):201, 88

               
               
               Conread position:1085-1243
               
               
               Cow position:chr13:16790186-16790035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1085-1276
               
               
               Cow position:chr13:21171593-21171784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:1085-1277
               
               
               Cow position:chr13:17021749-17021939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):170, 55

               
               
               Conread position:1085-1277
               
               
               Cow position:chr13:52913850-52913663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1085-1278
               
               
               Cow position:chr13:10711438-10711627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1085-1280
               
               
               Cow position:chr13:369146-369342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1085-1288
               
               
               Cow position:chr13:31507467-31507667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):158, 93

               
               
               Conread position:1085-1294
               
               
               Cow position:chr13:35659736-35659525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:1085-1296
               
               
               Cow position:chr13:26423028-26422805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1087-1273
               
               
               Cow position:chr13:20534871-20534691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1087-1277
               
               
               Cow position:chr13:22345302-22345488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):147, 28

               
               
               Conread position:1087-1296
               
               
               Cow position:chr13:51249405-51249609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1088-1283
               
               
               Cow position:chr13:6113552-6113750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 191

               
               
               Conread position:1088-1287
               
               
               Cow position:chr13:20137794-20137594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 6

               
               
               Conread position:1088-1288
               
               
               Cow position:chr13:16099147-16099353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1088-1288
               
               
               Cow position:chr13:21246735-21246937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:1088-1295
               
               
               Cow position:chr13:11147031-11146820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1088-1296
               
               
               Cow position:chr13:23975193-23975399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:1090-1268
               
               
               Cow position:chr13:48597881-48597705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 74

               
               
               Conread position:1091-1277
               
               
               Cow position:chr13:13089000-13088819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1092-1288
               
               
               Cow position:chr13:17994403-17994597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):63, 71

               
               
               Conread position:1093-1294
               
               
               Cow position:chr13:32017543-32017748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:1093-1295
               
               
               Cow position:chr13:37344767-37344563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:1094-1266
               
               
               Cow position:chr13:16525255-16525430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:1096-1281
               
               
               Cow position:chr13:5092428-5092612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:1096-1294
               
               
               Cow position:chr13:6189634-6189829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1096-1295
               
               
               Cow position:chr13:24107582-24107778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 68

               
               
               Conread position:1097-1283
               
               
               Cow position:chr13:39376486-39376298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):84, 5

               
               
               Conread position:1097-1296
               
               
               Cow position:chr13:10511736-10511941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 71

               
               
               Conread position:1099-1283
               
               
               Cow position:chr13:13265524-13265346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1100-1288
               
               
               Cow position:chr13:6865703-6865887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1103-1283
               
               
               Cow position:chr13:5930349-5930530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:1104-1285
               
               
               Cow position:chr13:28081680-28081496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 74

               
               
               Conread position:1106-1275
               
               
               Cow position:chr13:26395417-26395248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1108-1290
               
               
               Cow position:chr13:23399720-23399540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1108-1296
               
               
               Cow position:chr13:28605437-28605629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1109-1287
               
               
               Cow position:chr13:15162679-15162860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 56

               
               
               Conread position:1117-1277
               
               
               Cow position:chr13:27198853-27198701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1117-1277
               
               
               Cow position:chr13:53619949-53619787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:1117-1279
               
               
               Cow position:chr13:23823089-23823245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr13:5659822-5659991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:1117-1288
               
               
               Cow position:chr13:6951524-6951356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr13:23478847-23478678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr13:43342513-43342343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1117-1296
               
               
               Cow position:chr13:23795443-23795610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:1120-1296
               
               
               Cow position:chr13:14782284-14782118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1123-1296
               
               
               Cow position:chr13:25313210-25313381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1130-1288
               
               
               Cow position:chr13:17815170-17815019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):139, 41

               
               
               Conread position:1130-1296
               
               
               Cow position:chr13:55327373-55327207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:1133-1295
               
               
               Cow position:chr13:25924293-25924456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:1134-1268
               
               
               Cow position:chr13:58157129-58157261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1136-1296
               
               
               Cow position:chr13:62304497-62304339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:1149-1280
               
               
               Cow position:chr13:30809460-30809591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:983-1283
               
               
               Cow position:chr14:15212056-15211770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):291, 11

               
               
               Conread position:1033-1277
               
               
               Cow position:chr14:21529990-21530240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):184, 82

               
               
               Conread position:1061-1282
               
               
               Cow position:chr14:28115129-28115351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):77, 91

               
               
               Conread position:1061-1296
               
               
               Cow position:chr14:24922157-24921919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:1063-1291
               
               
               Cow position:chr14:49941071-49940843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 103

               
               
               Conread position:1065-1296
               
               
               Cow position:chr14:24732292-24732058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:1067-1263
               
               
               Cow position:chr14:19487347-19487159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):174, 111

               
               
               Conread position:1067-1273
               
               
               Cow position:chr14:43868361-43868153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:1067-1278
               
               
               Cow position:chr14:42330407-42330188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1067-1282
               
               
               Cow position:chr14:21357607-21357394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):208, 45

               
               
               Conread position:1067-1288
               
               
               Cow position:chr14:12634830-12635045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1067-1294
               
               
               Cow position:chr14:4203046-4203266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1295
               
               
               Cow position:chr14:20826542-20826316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1067-1295
               
               
               Cow position:chr14:42154920-42155143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:1067-1296
               
               
               Cow position:chr14:4877179-4877407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:1067-1296
               
               
               Cow position:chr14:19827428-19827648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 116

               
               
               Conread position:1068-1210
               
               
               Cow position:chr14:45577041-45577181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr14:26433191-26433394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr14:24945440-24945647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 111

               
               
               Conread position:1068-1273
               
               
               Cow position:chr14:25903582-25903379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr14:33714627-33714827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr14:10078319-10078097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 120

               
               
               Conread position:1068-1277
               
               
               Cow position:chr14:11729059-11729264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr14:20110671-20110879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):193, 120

               
               
               Conread position:1068-1278
               
               
               Cow position:chr14:33791239-33791035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr14:21933292-21933506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr14:23443071-23442864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):200, 48

               
               
               Conread position:1068-1281
               
               
               Cow position:chr14:36775700-36775502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr14:15469931-15470148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):128, 49

               
               
               Conread position:1068-1282
               
               
               Cow position:chr14:21224689-21224480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:1068-1283
               
               
               Cow position:chr14:6490648-6490867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr14:6865051-6864834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr14:11043440-11043658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr14:11508183-11508402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr14:19850975-19851192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:1068-1283
               
               
               Cow position:chr14:44713470-44713252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:1068-1284
               
               
               Cow position:chr14:36166987-36166776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 37

               
               
               Conread position:1068-1285
               
               
               Cow position:chr14:15313612-15313392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:1068-1285
               
               
               Cow position:chr14:48838646-48838424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:7636444-7636671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:12033190-12033412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 58

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:14949162-14949382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:18345681-18345893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):210, 41

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:23424310-23424096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):200, 48

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:29734313-29734529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):207, 120

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:33546305-33546530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:35420713-35420932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):206, 97

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:36559175-36559395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 96

               
               
               Conread position:1068-1288
               
               
               Cow position:chr14:40191636-40191426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1068-1289
               
               
               Cow position:chr14:13846036-13845824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):206, 103

               
               
               Conread position:1068-1290
               
               
               Cow position:chr14:12954334-12954545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr14:5025333-5025103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 130

               
               
               Conread position:1068-1291
               
               
               Cow position:chr14:16524524-16524295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:1068-1292
               
               
               Cow position:chr14:49824571-49824784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):154, 47

               
               
               Conread position:1068-1294
               
               
               Cow position:chr14:4848398-4848177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):139, 28

               
               
               Conread position:1068-1294
               
               
               Cow position:chr14:11577119-11576896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):145, 79

               
               
               Conread position:1068-1294
               
               
               Cow position:chr14:15931927-15931700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1295
               
               
               Cow position:chr14:20640579-20640806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 36

               
               
               Conread position:1068-1295
               
               
               Cow position:chr14:20984389-20984158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 117

               
               
               Conread position:1068-1295
               
               
               Cow position:chr14:23682315-23682092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 116

               
               
               Conread position:1068-1296
               
               
               Cow position:chr14:11470100-11470328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 28

               
               
               Conread position:1068-1296
               
               
               Cow position:chr14:12146429-12146656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 126

               
               
               Conread position:1068-1296
               
               
               Cow position:chr14:20245118-20245345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):208, 97

               
               
               Conread position:1068-1296
               
               
               Cow position:chr14:24527111-24527343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr14:25225779-25225557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:1069-1265
               
               
               Cow position:chr14:16760450-16760254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):74, 129

               
               
               Conread position:1069-1272
               
               
               Cow position:chr14:48427121-48426920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:1069-1276
               
               
               Cow position:chr14:34775696-34775905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 113

               
               
               Conread position:1069-1277
               
               
               Cow position:chr14:10609730-10609522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 94

               
               
               Conread position:1069-1278
               
               
               Cow position:chr14:10852080-10851869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:1069-1278
               
               
               Cow position:chr14:36442968-36443175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1069-1279
               
               
               Cow position:chr14:39434209-39434413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):98, 76

               
               
               Conread position:1069-1283
               
               
               Cow position:chr14:41210905-41210701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 57

               
               
               Conread position:1069-1288
               
               
               Cow position:chr14:47170304-47170517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1069-1292
               
               
               Cow position:chr14:26655084-26655309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 101

               
               
               Conread position:1069-1294
               
               
               Cow position:chr14:29965069-29964843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 74

               
               
               Conread position:1069-1295
               
               
               Cow position:chr14:23103951-23104171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):106, 57

               
               
               Conread position:1069-1296
               
               
               Cow position:chr14:44615098-44615326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:1070-1278
               
               
               Cow position:chr14:15492643-15492433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):56, 176

               
               
               Conread position:1070-1295
               
               
               Cow position:chr14:36254647-36254862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1296
               
               
               Cow position:chr14:28304733-28304964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):6, 114

               
               
               Conread position:1070-1296
               
               
               Cow position:chr14:33751584-33751360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):153, 55

               
               
               Conread position:1071-1279
               
               
               Cow position:chr14:11643202-11643405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1073-1196
               
               
               Cow position:chr14:19372385-19372264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1073-1268
               
               
               Cow position:chr14:25228187-25227999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1073-1277
               
               
               Cow position:chr14:36151372-36151167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:1073-1280
               
               
               Cow position:chr14:10706921-10706719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1073-1288
               
               
               Cow position:chr14:13042801-13042591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1075-1283
               
               
               Cow position:chr14:13385412-13385202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):117, 90

               
               
               Conread position:1075-1287
               
               
               Cow position:chr14:21535262-21535471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):195, 100

               
               
               Conread position:1075-1294
               
               
               Cow position:chr14:9030318-9030108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):202, 27

               
               
               Conread position:1075-1295
               
               
               Cow position:chr14:7198542-7198320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1075-1296
               
               
               Cow position:chr14:38747715-38747504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1078-1293
               
               
               Cow position:chr14:41749718-41749928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1079-1288
               
               
               Cow position:chr14:41082418-41082634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:1080-1262
               
               
               Cow position:chr14:12763669-12763849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:1080-1282
               
               
               Cow position:chr14:8707588-8707394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1080-1296
               
               
               Cow position:chr14:21556987-21557199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1080-1296
               
               
               Cow position:chr14:24785697-24785482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):201, 132

               
               
               Conread position:1080-1296
               
               
               Cow position:chr14:26442304-26442521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:1082-1284
               
               
               Cow position:chr14:437435-437637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):99, 88

               
               
               Conread position:1082-1288
               
               
               Cow position:chr14:6234183-6234393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 90

               
               
               Conread position:1082-1288
               
               
               Cow position:chr14:37103247-37103037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1295
               
               
               Cow position:chr14:18412554-18412771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1082-1296
               
               
               Cow position:chr14:13515955-13516169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:1082-1296
               
               
               Cow position:chr14:24597739-24597954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1082-1296
               
               
               Cow position:chr14:26859697-26859916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):72, 115

               
               
               Conread position:1083-1276
               
               
               Cow position:chr14:27733638-27733452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1083-1277
               
               
               Cow position:chr14:35651749-35651937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):89, 66

               
               
               Conread position:1083-1282
               
               
               Cow position:chr14:50519143-50519339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr14:18941250-18941456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:1083-1288
               
               
               Cow position:chr14:27364613-27364409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:1083-1296
               
               
               Cow position:chr14:48829703-48829912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 81

               
               
               Conread position:1084-1279
               
               
               Cow position:chr14:40754212-40754403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1084-1282
               
               
               Cow position:chr14:28924203-28924002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):114, 87

               
               
               Conread position:1084-1283
               
               
               Cow position:chr14:18270396-18270196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 71

               
               
               Conread position:1084-1283
               
               
               Cow position:chr14:22202095-22202294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):192, 82

               
               
               Conread position:1084-1288
               
               
               Cow position:chr14:12244349-12244551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:1084-1288
               
               
               Cow position:chr14:15428513-15428310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):138, 81

               
               
               Conread position:1084-1288
               
               
               Cow position:chr14:31130340-31130547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 81

               
               
               Conread position:1085-1288
               
               
               Cow position:chr14:13731064-13731266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:1085-1296
               
               
               Cow position:chr14:47224332-47224547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:1086-1276
               
               
               Cow position:chr14:20736644-20736458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1086-1278
               
               
               Cow position:chr14:45677263-45677073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:1086-1282
               
               
               Cow position:chr14:41156691-41156881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1088-1283
               
               
               Cow position:chr14:23078761-23078955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):108, 119

               
               
               Conread position:1088-1285
               
               
               Cow position:chr14:6541693-6541892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 99

               
               
               Conread position:1088-1288
               
               
               Cow position:chr14:2975058-2975254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:1089-1280
               
               
               Cow position:chr14:20914947-20915141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1089-1295
               
               
               Cow position:chr14:28465185-28465393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 85

               
               
               Conread position:1090-1283
               
               
               Cow position:chr14:37243366-37243561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:1090-1287
               
               
               Cow position:chr14:12072927-12073123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 74

               
               
               Conread position:1093-1278
               
               
               Cow position:chr14:22989060-22988877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1093-1283
               
               
               Cow position:chr14:24744963-24744770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 72

               
               
               Conread position:1096-1285
               
               
               Cow position:chr14:11079475-11079290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1096-1285
               
               
               Cow position:chr14:20466958-20466771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):116, 23

               
               
               Conread position:1099-1264
               
               
               Cow position:chr14:27848205-27848035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):76, 150

               
               
               Conread position:1099-1283
               
               
               Cow position:chr14:10937693-10937507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:1100-1265
               
               
               Cow position:chr14:11280094-11280258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1100-1266
               
               
               Cow position:chr14:2759117-2759279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1104-1283
               
               
               Cow position:chr14:32784100-32784282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1105-1296
               
               
               Cow position:chr14:33618317-33618129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:1109-1295
               
               
               Cow position:chr14:8949660-8949476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):87, 69

               
               
               Conread position:1117-1277
               
               
               Cow position:chr14:15228542-15228388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1117-1286
               
               
               Cow position:chr14:31342214-31342043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:1120-1293
               
               
               Cow position:chr14:24746465-24746283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1124-1296
               
               
               Cow position:chr14:20667013-20667181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1049-1292
               
               
               Cow position:chr15:2931449-2931697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:1053-1196
               
               
               Cow position:chr15:16908546-16908405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1055-1288
               
               
               Cow position:chr15:5158485-5158251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:1061-1283
               
               
               Cow position:chr15:26529995-26529780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1063-1296
               
               
               Cow position:chr15:20370351-20370581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:1067-1258
               
               
               Cow position:chr15:13701670-13701863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):107, 99

               
               
               Conread position:1067-1265
               
               
               Cow position:chr15:33306208-33306022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1067-1273
               
               
               Cow position:chr15:24994414-24994617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:1067-1274
               
               
               Cow position:chr15:24967894-24967694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:1067-1277
               
               
               Cow position:chr15:30316468-30316670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:1067-1278
               
               
               Cow position:chr15:14870839-14870643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):150, 48

               
               
               Conread position:1067-1279
               
               
               Cow position:chr15:20391176-20391389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):107, 118

               
               
               Conread position:1067-1281
               
               
               Cow position:chr15:11995928-11996142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr15:14474442-14474223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):119, 100

               
               
               Conread position:1067-1283
               
               
               Cow position:chr15:22930251-22930467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 99

               
               
               Conread position:1067-1285
               
               
               Cow position:chr15:23275641-23275417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):140, 207

               
               
               Conread position:1067-1293
               
               
               Cow position:chr15:30470872-30471104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:1067-1294
               
               
               Cow position:chr15:33643189-33642962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:1067-1296
               
               
               Cow position:chr15:21821825-21822057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 111

               
               
               Conread position:1067-1296
               
               
               Cow position:chr15:22939226-22939451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1199
               
               
               Cow position:chr15:16307520-16307390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chr15:42789050-42789190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr15:1330005-1330210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr15:26851128-26851332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 115

               
               
               Conread position:1068-1277
               
               
               Cow position:chr15:12304736-12304529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr15:13432583-13432372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):107, 137

               
               
               Conread position:1068-1277
               
               
               Cow position:chr15:47843995-47844198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr15:36259506-36259708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr15:4861806-4862022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):113, 97

               
               
               Conread position:1068-1282
               
               
               Cow position:chr15:225706-225919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):106, 119

               
               
               Conread position:1068-1283
               
               
               Cow position:chr15:11560417-11560632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 124

               
               
               Conread position:1068-1283
               
               
               Cow position:chr15:25208659-25208875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr15:25571711-25571929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr15:31416071-31416288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:1068-1283
               
               
               Cow position:chr15:36952106-36952315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr15:38827226-38827431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr15:39299217-39299434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:1068-1283
               
               
               Cow position:chr15:49784187-49784396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1284
               
               
               Cow position:chr15:4676900-4677116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1284
               
               
               Cow position:chr15:49132156-49131940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):201, 133

               
               
               Conread position:1068-1287
               
               
               Cow position:chr15:3695730-3695517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr15:34273899-34273679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1288
               
               
               Cow position:chr15:21893876-21893656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):206, 44

               
               
               Conread position:1068-1291
               
               
               Cow position:chr15:17870184-17870414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 226

               
               
               Conread position:1068-1293
               
               
               Cow position:chr15:18671358-18671574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1068-1294
               
               
               Cow position:chr15:9879279-9879505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 179

               
               
               Conread position:1068-1294
               
               
               Cow position:chr15:45479100-45478871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):114, 99

               
               
               Conread position:1068-1295
               
               
               Cow position:chr15:608244-608015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):107, 96

               
               
               Conread position:1068-1295
               
               
               Cow position:chr15:21941748-21941978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:1068-1296
               
               
               Cow position:chr15:16112498-16112264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr15:19002178-19002411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 213

               
               
               Conread position:1068-1296
               
               
               Cow position:chr15:31283483-31283246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1296
               
               
               Cow position:chr15:36353766-36353542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr15:36388389-36388168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):207, 110

               
               
               Conread position:1069-1211
               
               
               Cow position:chr15:26718825-26718965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1069-1258
               
               
               Cow position:chr15:24982081-24982270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:1069-1261
               
               
               Cow position:chr15:8354138-8353947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1069-1267
               
               
               Cow position:chr15:2953037-2953233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1069-1268
               
               
               Cow position:chr15:244878-244681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 119

               
               
               Conread position:1069-1277
               
               
               Cow position:chr15:20534353-20534563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 106

               
               
               Conread position:1069-1282
               
               
               Cow position:chr15:41056107-41056324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 180

               
               
               Conread position:1069-1283
               
               
               Cow position:chr15:26896597-26896815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr15:50333077-50332859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):105, 51

               
               
               Conread position:1069-1287
               
               
               Cow position:chr15:22938665-22938886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 215

               
               
               Conread position:1069-1288
               
               
               Cow position:chr15:38806404-38806626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:1069-1292
               
               
               Cow position:chr15:17763001-17762787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1069-1294
               
               
               Cow position:chr15:11613995-11614222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):112, 101

               
               
               Conread position:1069-1296
               
               
               Cow position:chr15:26442312-26442085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):213, 222

               
               
               Conread position:1069-1296
               
               
               Cow position:chr15:36435302-36435070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):107, 95

               
               
               Conread position:1070-1265
               
               
               Cow position:chr15:5420788-5420980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 110

               
               
               Conread position:1070-1281
               
               
               Cow position:chr15:26158503-26158713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:1070-1283
               
               
               Cow position:chr15:53716530-53716319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):142, 108

               
               
               Conread position:1070-1288
               
               
               Cow position:chr15:38652505-38652724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 85

               
               
               Conread position:1070-1290
               
               
               Cow position:chr15:14988085-14987873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1070-1294
               
               
               Cow position:chr15:11908855-11909073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1071-1296
               
               
               Cow position:chr15:22532349-22532126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 123

               
               
               Conread position:1072-1288
               
               
               Cow position:chr15:34223960-34223747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):141, 107

               
               
               Conread position:1073-1283
               
               
               Cow position:chr15:1722757-1722957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1073-1284
               
               
               Cow position:chr15:36887928-36887722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1075-1281
               
               
               Cow position:chr15:13395638-13395434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):117, 40

               
               
               Conread position:1076-1296
               
               
               Cow position:chr15:17853632-17853849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):200, 91

               
               
               Conread position:1077-1283
               
               
               Cow position:chr15:41534739-41534538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):174, 101

               
               
               Conread position:1078-1295
               
               
               Cow position:chr15:26079266-26079474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1078-1296
               
               
               Cow position:chr15:24616659-24616439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:1078-1296
               
               
               Cow position:chr15:40835201-40834986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1079-1278
               
               
               Cow position:chr15:48326144-48326339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):177, 99

               
               
               Conread position:1079-1281
               
               
               Cow position:chr15:36422699-36422509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1079-1282
               
               
               Cow position:chr15:17124381-17124586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 13

               
               
               Conread position:1080-1264
               
               
               Cow position:chr15:27063435-27063614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1275
               
               
               Cow position:chr15:51307596-51307778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1080-1277
               
               
               Cow position:chr15:15992557-15992751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):137, 53

               
               
               Conread position:1080-1278
               
               
               Cow position:chr15:46563398-46563588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1285
               
               
               Cow position:chr15:794935-795136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):196, 98

               
               
               Conread position:1080-1288
               
               
               Cow position:chr15:25452096-25451880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1080-1295
               
               
               Cow position:chr15:15154386-15154169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 164

               
               
               Conread position:1082-1277
               
               
               Cow position:chr15:31928814-31929008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:1082-1283
               
               
               Cow position:chr15:6082513-6082717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr15:42704883-42704680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 102

               
               
               Conread position:1082-1294
               
               
               Cow position:chr15:44450019-44449804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 80

               
               
               Conread position:1083-1280
               
               
               Cow position:chr15:14576411-14576217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1083-1282
               
               
               Cow position:chr15:30001777-30001581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr15:22531746-22531557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr15:31495140-31495334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr15:34552806-34553008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:1083-1287
               
               
               Cow position:chr15:20459225-20459431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 102

               
               
               Conread position:1083-1292
               
               
               Cow position:chr15:43626552-43626339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 201

               
               
               Conread position:1083-1295
               
               
               Cow position:chr15:36621479-36621271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):201, 29

               
               
               Conread position:1083-1296
               
               
               Cow position:chr15:8679673-8679889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:1083-1296
               
               
               Cow position:chr15:16246679-16246463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 83

               
               
               Conread position:1083-1296
               
               
               Cow position:chr15:25595445-25595657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 88

               
               
               Conread position:1084-1283
               
               
               Cow position:chr15:44119389-44119585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:1084-1295
               
               
               Cow position:chr15:16018118-16017904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:1084-1296
               
               
               Cow position:chr15:2968418-2968205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:1084-1296
               
               
               Cow position:chr15:6227100-6227305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 91

               
               
               Conread position:1084-1296
               
               
               Cow position:chr15:12045455-12045671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1085-1273
               
               
               Cow position:chr15:14964086-14964266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1085-1277
               
               
               Cow position:chr15:41475749-41475937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1085-1288
               
               
               Cow position:chr15:43715408-43715210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 95

               
               
               Conread position:1085-1289
               
               
               Cow position:chr15:30047465-30047676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1085-1295
               
               
               Cow position:chr15:848728-848518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 96

               
               
               Conread position:1085-1296
               
               
               Cow position:chr15:275734-275514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:1086-1282
               
               
               Cow position:chr15:28099192-28098996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):183, 162

               
               
               Conread position:1087-1296
               
               
               Cow position:chr15:7916483-7916697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):87, 79

               
               
               Conread position:1088-1277
               
               
               Cow position:chr15:23572608-23572799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:1088-1278
               
               
               Cow position:chr15:44658438-44658255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1088-1283
               
               
               Cow position:chr15:4500781-4500582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 91

               
               
               Conread position:1088-1288
               
               
               Cow position:chr15:52317133-52316940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1088-1289
               
               
               Cow position:chr15:19553846-19554048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1088-1295
               
               
               Cow position:chr15:20566990-20566789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1091-1283
               
               
               Cow position:chr15:46283842-46284034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):184, 104

               
               
               Conread position:1095-1288
               
               
               Cow position:chr15:46059433-46059233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1096-1273
               
               
               Cow position:chr15:12913428-12913605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:1099-1282
               
               
               Cow position:chr15:35642081-35641897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:1099-1286
               
               
               Cow position:chr15:11320730-11320921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 65

               
               
               Conread position:1100-1293
               
               
               Cow position:chr15:47773426-47773608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):174, 79

               
               
               Conread position:1101-1295
               
               
               Cow position:chr15:40844554-40844750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 65

               
               
               Conread position:1102-1285
               
               
               Cow position:chr15:8331138-8331314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1106-1279
               
               
               Cow position:chr15:48819105-48818941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:1106-1283
               
               
               Cow position:chr15:33897884-33897705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):101, 72

               
               
               Conread position:1106-1286
               
               
               Cow position:chr15:44089103-44089284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1107-1279
               
               
               Cow position:chr15:29810182-29810013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1107-1284
               
               
               Cow position:chr15:49483687-49483509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1108-1287
               
               
               Cow position:chr15:40000979-40000805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):135, 80

               
               
               Conread position:1108-1288
               
               
               Cow position:chr15:26849479-26849653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1109-1283
               
               
               Cow position:chr15:18703878-18704050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:1109-1289
               
               
               Cow position:chr15:5710459-5710290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1117-1281
               
               
               Cow position:chr15:49230268-49230427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:1117-1283
               
               
               Cow position:chr15:24124782-24124607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr15:840099-840269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):152, 62

               
               
               Conread position:1117-1288
               
               
               Cow position:chr15:36643800-36643967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1119-1294
               
               
               Cow position:chr15:27975824-27976000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 149

               
               
               Conread position:1120-1296
               
               
               Cow position:chr15:53005893-53006064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1126-1278
               
               
               Cow position:chr15:14883713-14883564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 53

               
               
               Conread position:1131-1296
               
               
               Cow position:chr15:47920115-47920276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1136-1278
               
               
               Cow position:chr15:1508384-1508245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1023-1296
               
               
               Cow position:chr16:29527776-29528058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):190, 150

               
               
               Conread position:1051-1282
               
               
               Cow position:chr16:14685418-14685184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 134

               
               
               Conread position:1051-1285
               
               
               Cow position:chr16:10032614-10032849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):104, 141

               
               
               Conread position:1057-1283
               
               
               Cow position:chr16:31484681-31484460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 123

               
               
               Conread position:1061-1284
               
               
               Cow position:chr16:17027513-17027735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:1061-1287
               
               
               Cow position:chr16:42734026-42733810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 102

               
               
               Conread position:1063-1289
               
               
               Cow position:chr16:29095907-29096130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 121

               
               
               Conread position:1064-1275
               
               
               Cow position:chr16:40029896-40029687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1067-1204
               
               
               Cow position:chr16:33235170-33235036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1067-1261
               
               
               Cow position:chr16:25386968-25387153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1067-1264
               
               
               Cow position:chr16:47964828-47964636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):164, 111

               
               
               Conread position:1067-1265
               
               
               Cow position:chr16:9958820-9959017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:1067-1273
               
               
               Cow position:chr16:7546835-7546640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1067-1275
               
               
               Cow position:chr16:238259-238464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):106, 53

               
               
               Conread position:1067-1276
               
               
               Cow position:chr16:34753969-34753754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:1067-1277
               
               
               Cow position:chr16:9905081-9905296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr16:31117623-31117413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1067-1285
               
               
               Cow position:chr16:17135069-17134853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1285
               
               
               Cow position:chr16:42444147-42444368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):125, 115

               
               
               Conread position:1067-1288
               
               
               Cow position:chr16:24142967-24142743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):107, 53

               
               
               Conread position:1067-1296
               
               
               Cow position:chr16:50289143-50289369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):190, 112

               
               
               Conread position:1068-1205
               
               
               Cow position:chr16:21040019-21040157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 128

               
               
               Conread position:1068-1206
               
               
               Cow position:chr16:19003541-19003404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1264
               
               
               Cow position:chr16:10504819-10505001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr16:33646007-33646203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):130, 110

               
               
               Conread position:1068-1265
               
               
               Cow position:chr16:42864745-42864547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):101, 120

               
               
               Conread position:1068-1266
               
               
               Cow position:chr16:12010087-12010287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr16:7812682-7812884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):99, 129

               
               
               Conread position:1068-1268
               
               
               Cow position:chr16:32893620-32893810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 97

               
               
               Conread position:1068-1268
               
               
               Cow position:chr16:38708845-38708645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:1068-1273
               
               
               Cow position:chr16:17460159-17460373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr16:31561747-31561950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr16:48095773-48095573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1276
               
               
               Cow position:chr16:7626151-7626352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1276
               
               
               Cow position:chr16:21370195-21369991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 47

               
               
               Conread position:1068-1276
               
               
               Cow position:chr16:33704800-33705001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr16:9553051-9553249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr16:12324447-12324654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr16:16597550-16597759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):142, 5

               
               
               Conread position:1068-1277
               
               
               Cow position:chr16:27728252-27728449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr16:31079099-31078903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr16:7418371-7418574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr16:13689658-13689864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr16:14242363-14242569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:1068-1278
               
               
               Cow position:chr16:45122027-45122243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr16:9985401-9985200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr16:46433335-46433122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 122

               
               
               Conread position:1068-1282
               
               
               Cow position:chr16:45677970-45678183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):200, 118

               
               
               Conread position:1068-1282
               
               
               Cow position:chr16:52275137-52274930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr16:3047347-3047136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):173, 49

               
               
               Conread position:1068-1283
               
               
               Cow position:chr16:4275747-4275536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):173, 49

               
               
               Conread position:1068-1283
               
               
               Cow position:chr16:11628957-11629175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 80

               
               
               Conread position:1068-1283
               
               
               Cow position:chr16:29557638-29557418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:1068-1283
               
               
               Cow position:chr16:40514490-40514287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr16:46548277-46548055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr16:55233676-55233883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr16:55613512-55613294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1284
               
               
               Cow position:chr16:1582934-1582721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):212, 117

               
               
               Conread position:1068-1284
               
               
               Cow position:chr16:30369339-30369557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 102

               
               
               Conread position:1068-1285
               
               
               Cow position:chr16:11584412-11584200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):33, 5

               
               
               Conread position:1068-1286
               
               
               Cow position:chr16:19047442-19047223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1286
               
               
               Cow position:chr16:25839612-25839822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):207, 110

               
               
               Conread position:1068-1287
               
               
               Cow position:chr16:11957586-11957368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):128, 107

               
               
               Conread position:1068-1288
               
               
               Cow position:chr16:19052627-19052842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr16:20824469-20824686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr16:25170385-25170601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr16:31575136-31575358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):99, 107

               
               
               Conread position:1068-1288
               
               
               Cow position:chr16:50286505-50286725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:1068-1288
               
               
               Cow position:chr16:56243893-56243673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):184, 62

               
               
               Conread position:1068-1288
               
               
               Cow position:chr16:56626929-56627141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1068-1294
               
               
               Cow position:chr16:10171530-10171756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):107, 99

               
               
               Conread position:1068-1295
               
               
               Cow position:chr16:11134989-11134767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr16:19643880-19644103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 111

               
               
               Conread position:1068-1295
               
               
               Cow position:chr16:42078855-42078629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):210, 49

               
               
               Conread position:1068-1295
               
               
               Cow position:chr16:45294536-45294764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:1068-1296
               
               
               Cow position:chr16:4970877-4971106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr16:8738057-8738286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr16:9596362-9596584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr16:11094835-11094603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 99

               
               
               Conread position:1068-1296
               
               
               Cow position:chr16:21450839-21451069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):98, 88

               
               
               Conread position:1068-1296
               
               
               Cow position:chr16:23483274-23483500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1296
               
               
               Cow position:chr16:30935851-30936084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):108, 99

               
               
               Conread position:1068-1296
               
               
               Cow position:chr16:39474160-39473940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr16:44744141-44743913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:1069-1241
               
               
               Cow position:chr16:11615252-11615079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1069-1273
               
               
               Cow position:chr16:35195620-35195415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):117, 97

               
               
               Conread position:1069-1275
               
               
               Cow position:chr16:54579160-54579363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1069-1277
               
               
               Cow position:chr16:30305820-30305617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:1069-1277
               
               
               Cow position:chr16:56082372-56082162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:1069-1280
               
               
               Cow position:chr16:51598619-51598409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):160, 26

               
               
               Conread position:1069-1282
               
               
               Cow position:chr16:4857106-4856892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:1069-1283
               
               
               Cow position:chr16:24855535-24855741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:1069-1284
               
               
               Cow position:chr16:51500925-51501135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1069-1287
               
               
               Cow position:chr16:39030107-39029883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1069-1287
               
               
               Cow position:chr16:40446255-40446477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):105, 48

               
               
               Conread position:1069-1288
               
               
               Cow position:chr16:22984749-22984963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):211, 30

               
               
               Conread position:1069-1288
               
               
               Cow position:chr16:55683293-55683510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:1069-1290
               
               
               Cow position:chr16:15945263-15945039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1069-1291
               
               
               Cow position:chr16:12320214-12320437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1069-1294
               
               
               Cow position:chr16:15407564-15407339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):149, 33

               
               
               Conread position:1069-1296
               
               
               Cow position:chr16:15927227-15927459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 98

               
               
               Conread position:1069-1296
               
               
               Cow position:chr16:16842536-16842308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:1069-1296
               
               
               Cow position:chr16:23058443-23058215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 101

               
               
               Conread position:1069-1296
               
               
               Cow position:chr16:47820561-47820795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:1070-1265
               
               
               Cow position:chr16:34205070-34204877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1070-1277
               
               
               Cow position:chr16:32142084-32142292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):126, 94

               
               
               Conread position:1070-1277
               
               
               Cow position:chr16:33198443-33198233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:1070-1281
               
               
               Cow position:chr16:7723695-7723903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1282
               
               
               Cow position:chr16:28444496-28444282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):106, 94

               
               
               Conread position:1070-1283
               
               
               Cow position:chr16:935463-935251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 46

               
               
               Conread position:1070-1283
               
               
               Cow position:chr16:24895280-24895497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:1070-1283
               
               
               Cow position:chr16:45554435-45554640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:1070-1285
               
               
               Cow position:chr16:1548884-1548673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr16:14376776-14376992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:1070-1288
               
               
               Cow position:chr16:35758196-35758411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 95

               
               
               Conread position:1070-1288
               
               
               Cow position:chr16:45813702-45813488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):144, 45

               
               
               Conread position:1071-1285
               
               
               Cow position:chr16:16552556-16552775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1072-1271
               
               
               Cow position:chr16:16025432-16025638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1073-1273
               
               
               Cow position:chr16:48613480-48613282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1073-1288
               
               
               Cow position:chr16:8068822-8068605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:1074-1265
               
               
               Cow position:chr16:23729926-23729730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:1074-1288
               
               
               Cow position:chr16:23681365-23681572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1075-1209
               
               
               Cow position:chr16:17292023-17291890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1075-1279
               
               
               Cow position:chr16:13306873-13306669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1075-1284
               
               
               Cow position:chr16:52170054-52170260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1075-1285
               
               
               Cow position:chr16:42977464-42977682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:1079-1258
               
               
               Cow position:chr16:39385494-39385670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1079-1278
               
               
               Cow position:chr16:48956801-48957000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):175, 109

               
               
               Conread position:1079-1295
               
               
               Cow position:chr16:45193806-45193589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):113, 146

               
               
               Conread position:1080-1276
               
               
               Cow position:chr16:15905246-15905044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):95, 174

               
               
               Conread position:1080-1282
               
               
               Cow position:chr16:29076910-29077111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 86

               
               
               Conread position:1080-1288
               
               
               Cow position:chr16:26649625-26649425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1290
               
               
               Cow position:chr16:19402758-19402549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):131, 85

               
               
               Conread position:1080-1292
               
               
               Cow position:chr16:48398250-48398044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1294
               
               
               Cow position:chr16:19478761-19478550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):91, 99

               
               
               Conread position:1080-1295
               
               
               Cow position:chr16:7136341-7136125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):201, 100

               
               
               Conread position:1082-1283
               
               
               Cow position:chr16:42038067-42038271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):7, 181

               
               
               Conread position:1082-1288
               
               
               Cow position:chr16:52357533-52357324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 85

               
               
               Conread position:1082-1295
               
               
               Cow position:chr16:50442554-50442773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):92, 73

               
               
               Conread position:1082-1296
               
               
               Cow position:chr16:9729201-9729418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 85

               
               
               Conread position:1082-1296
               
               
               Cow position:chr16:51241534-51241321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1083-1279
               
               
               Cow position:chr16:6609497-6609307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr16:15714116-15714318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:1083-1284
               
               
               Cow position:chr16:19670346-19670150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):195, 105

               
               
               Conread position:1083-1288
               
               
               Cow position:chr16:56595384-56595176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 8

               
               
               Conread position:1083-1288
               
               
               Cow position:chr16:56615496-56615291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:1083-1289
               
               
               Cow position:chr16:820257-820464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:1083-1294
               
               
               Cow position:chr16:35297415-35297618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):115, 66

               
               
               Conread position:1083-1296
               
               
               Cow position:chr16:2223390-2223174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr16:7583404-7583615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 90

               
               
               Conread position:1083-1296
               
               
               Cow position:chr16:10011842-10011630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:1083-1296
               
               
               Cow position:chr16:18048148-18047935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 133

               
               
               Conread position:1083-1296
               
               
               Cow position:chr16:33236276-33236065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:1084-1284
               
               
               Cow position:chr16:8242911-8242720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1084-1284
               
               
               Cow position:chr16:22318943-22318743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:1084-1293
               
               
               Cow position:chr16:11083006-11083210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1084-1295
               
               
               Cow position:chr16:7665645-7665860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 101

               
               
               Conread position:1084-1296
               
               
               Cow position:chr16:4972019-4971803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):83, 75

               
               
               Conread position:1085-1281
               
               
               Cow position:chr16:24674669-24674468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):86, 188

               
               
               Conread position:1085-1288
               
               
               Cow position:chr16:7912138-7912341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):195, 41

               
               
               Conread position:1085-1288
               
               
               Cow position:chr16:8953670-8953462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:1085-1288
               
               
               Cow position:chr16:22972764-22972556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:1085-1288
               
               
               Cow position:chr16:31149387-31149585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1085-1295
               
               
               Cow position:chr16:7928376-7928164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 86

               
               
               Conread position:1085-1296
               
               
               Cow position:chr16:11660452-11660252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1086-1248
               
               
               Cow position:chr16:41578236-41578397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1087-1283
               
               
               Cow position:chr16:33290395-33290593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1088-1283
               
               
               Cow position:chr16:10249807-10249610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:1088-1288
               
               
               Cow position:chr16:8810079-8809886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 6

               
               
               Conread position:1088-1288
               
               
               Cow position:chr16:12091651-12091441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1088-1295
               
               
               Cow position:chr16:45278548-45278757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:1088-1296
               
               
               Cow position:chr16:8288935-8288734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1089-1296
               
               
               Cow position:chr16:53451718-53451924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):168, 118

               
               
               Conread position:1090-1283
               
               
               Cow position:chr16:16178046-16178231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1090-1291
               
               
               Cow position:chr16:21044310-21044515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 74

               
               
               Conread position:1091-1288
               
               
               Cow position:chr16:45826703-45826509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:1094-1288
               
               
               Cow position:chr16:29311541-29311739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1096-1285
               
               
               Cow position:chr16:28233285-28233096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 69

               
               
               Conread position:1096-1287
               
               
               Cow position:chr16:21442591-21442400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:1097-1279
               
               
               Cow position:chr16:24672842-24672658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 84

               
               
               Conread position:1099-1268
               
               
               Cow position:chr16:51143822-51143990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1099-1282
               
               
               Cow position:chr16:4616660-4616479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1099-1289
               
               
               Cow position:chr16:12493092-12492899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):73, 66

               
               
               Conread position:1099-1296
               
               
               Cow position:chr16:52325576-52325375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 72

               
               
               Conread position:1100-1277
               
               
               Cow position:chr16:32970056-32969882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1100-1288
               
               
               Cow position:chr16:12111939-12111758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1102-1283
               
               
               Cow position:chr16:23395335-23395152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:1103-1296
               
               
               Cow position:chr16:9097050-9097242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 62

               
               
               Conread position:1104-1288
               
               
               Cow position:chr16:15252024-15251849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1106-1283
               
               
               Cow position:chr16:49734115-49733939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:1106-1290
               
               
               Cow position:chr16:34506381-34506556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1106-1295
               
               
               Cow position:chr16:17617333-17617143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 58

               
               
               Conread position:1107-1276
               
               
               Cow position:chr16:41696039-41696206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):162, 72

               
               
               Conread position:1107-1296
               
               
               Cow position:chr16:13906415-13906236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1108-1273
               
               
               Cow position:chr16:31011359-31011524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 75

               
               
               Conread position:1115-1296
               
               
               Cow position:chr16:16542888-16543071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1116-1274
               
               
               Cow position:chr16:3938971-3938815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1117-1277
               
               
               Cow position:chr16:48130354-48130196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1282
               
               
               Cow position:chr16:23515725-23515560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):161, 71

               
               
               Conread position:1117-1284
               
               
               Cow position:chr16:44138452-44138283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:1117-1288
               
               
               Cow position:chr16:5396776-5396605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:1119-1295
               
               
               Cow position:chr16:51393348-51393169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:1121-1288
               
               
               Cow position:chr16:47274682-47274513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:1122-1296
               
               
               Cow position:chr16:27117350-27117525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:1133-1266
               
               
               Cow position:chr16:41653030-41653161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1135-1295
               
               
               Cow position:chr16:23033886-23034047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1037-1283
               
               
               Cow position:chr17:44798937-44798695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1040-1296
               
               
               Cow position:chr17:25466984-25467240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:1053-1295
               
               
               Cow position:chr17:8663523-8663765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:1063-1279
               
               
               Cow position:chr17:10508407-10508192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 138

               
               
               Conread position:1063-1283
               
               
               Cow position:chr17:17180069-17180292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):14, 102

               
               
               Conread position:1063-1294
               
               
               Cow position:chr17:36179016-36178790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:1067-1254
               
               
               Cow position:chr17:18473195-18473380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):108, 40

               
               
               Conread position:1067-1281
               
               
               Cow position:chr17:8948933-8948723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:1067-1281
               
               
               Cow position:chr17:26575198-26574978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr17:21466232-21466012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:1067-1284
               
               
               Cow position:chr17:31563651-31563437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:1067-1285
               
               
               Cow position:chr17:25514092-25513871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 205

               
               
               Conread position:1067-1285
               
               
               Cow position:chr17:32333060-32332845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):127, 177

               
               
               Conread position:1067-1287
               
               
               Cow position:chr17:17044301-17044084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):206, 104

               
               
               Conread position:1067-1288
               
               
               Cow position:chr17:3577570-3577778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1067-1288
               
               
               Cow position:chr17:11397698-11397918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 50

               
               
               Conread position:1067-1288
               
               
               Cow position:chr17:30501784-30501562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 141

               
               
               Conread position:1067-1289
               
               
               Cow position:chr17:29995405-29995182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:1067-1294
               
               
               Cow position:chr17:36431927-36432159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):14, 6

               
               
               Conread position:1068-1205
               
               
               Cow position:chr17:18848126-18847989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chr17:24554028-24554171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1068-1237
               
               
               Cow position:chr17:18109052-18108886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):136, 47

               
               
               Conread position:1068-1261
               
               
               Cow position:chr17:45296447-45296630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1068-1264
               
               
               Cow position:chr17:23101187-23100995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1068-1264
               
               
               Cow position:chr17:36330924-36330740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):170, 5

               
               
               Conread position:1068-1266
               
               
               Cow position:chr17:12510942-12510756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr17:5767939-5768130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr17:11912471-11912269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr17:25901232-25901444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr17:31037345-31037141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):128, 120

               
               
               Conread position:1068-1274
               
               
               Cow position:chr17:21114922-21114718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr17:11664553-11664337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:1068-1277
               
               
               Cow position:chr17:18934292-18934496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr17:32471749-32471550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr17:1562748-1562550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr17:28465456-28465668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:1068-1278
               
               
               Cow position:chr17:42150423-42150629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr17:10458904-10458692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:1068-1280
               
               
               Cow position:chr17:24587656-24587866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr17:946389-946600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr17:36275365-36275581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 177

               
               
               Conread position:1068-1282
               
               
               Cow position:chr17:21325364-21325589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr17:24928507-24928724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):108, 98

               
               
               Conread position:1068-1282
               
               
               Cow position:chr17:25800850-25800638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:1068-1283
               
               
               Cow position:chr17:1256468-1256251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):121, 97

               
               
               Conread position:1068-1283
               
               
               Cow position:chr17:1634460-1634248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr17:11832083-11831872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr17:25126382-25126590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr17:25584274-25584491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:1068-1283
               
               
               Cow position:chr17:25875428-25875642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:1068-1283
               
               
               Cow position:chr17:25885861-25886079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 77

               
               
               Conread position:1068-1283
               
               
               Cow position:chr17:38614992-38615208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1284
               
               
               Cow position:chr17:33288625-33288411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr17:20884555-20884775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 176

               
               
               Conread position:1068-1286
               
               
               Cow position:chr17:3153542-3153319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):139, 72

               
               
               Conread position:1068-1286
               
               
               Cow position:chr17:25128320-25128105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr17:21039589-21039805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr17:37341005-37340781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:7959212-7959428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:9824701-9824917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:17034981-17035197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:20157639-20157859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:24824274-24824498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):110, 180

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:25616282-25616495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):181, 50

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:32419084-32418866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:33793198-33793403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:34791033-34790814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:39606462-39606675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):210, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr17:40276772-40276987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:1068-1289
               
               
               Cow position:chr17:25612122-25612339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr17:4105962-4105741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):139, 181

               
               
               Conread position:1068-1290
               
               
               Cow position:chr17:4121698-4121476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):126, 176

               
               
               Conread position:1068-1293
               
               
               Cow position:chr17:12536433-12536215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):197, 107

               
               
               Conread position:1068-1294
               
               
               Cow position:chr17:5372495-5372272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):207, 107

               
               
               Conread position:1068-1295
               
               
               Cow position:chr17:8815224-8815444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr17:36864662-36864878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr17:40638979-40639207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:1068-1295
               
               
               Cow position:chr17:40673402-40673632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:1068-1296
               
               
               Cow position:chr17:12325733-12325509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):200, 118

               
               
               Conread position:1068-1296
               
               
               Cow position:chr17:17059456-17059677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr17:26637827-26637597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:1068-1296
               
               
               Cow position:chr17:32138392-32138160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 209

               
               
               Conread position:1069-1261
               
               
               Cow position:chr17:20848556-20848748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:1069-1277
               
               
               Cow position:chr17:4817561-4817770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:1069-1277
               
               
               Cow position:chr17:30728537-30728747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 146

               
               
               Conread position:1069-1278
               
               
               Cow position:chr17:25342708-25342499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1069-1279
               
               
               Cow position:chr17:24559323-24559535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):95, 113

               
               
               Conread position:1069-1279
               
               
               Cow position:chr17:36814394-36814607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1069-1281
               
               
               Cow position:chr17:21003793-21003587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1069-1282
               
               
               Cow position:chr17:40331800-40332023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):128, 46

               
               
               Conread position:1069-1283
               
               
               Cow position:chr17:32989509-32989720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):203, 109

               
               
               Conread position:1069-1288
               
               
               Cow position:chr17:3388859-3389085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):144, 46

               
               
               Conread position:1069-1288
               
               
               Cow position:chr17:6318834-6318616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):213, 109

               
               
               Conread position:1069-1288
               
               
               Cow position:chr17:6423797-6424004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr17:29084207-29084418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):120, 129

               
               
               Conread position:1069-1288
               
               
               Cow position:chr17:30713378-30713597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:1069-1288
               
               
               Cow position:chr17:32993591-32993375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):203, 109

               
               
               Conread position:1069-1289
               
               
               Cow position:chr17:24973974-24974195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:1069-1290
               
               
               Cow position:chr17:7810722-7810493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1069-1290
               
               
               Cow position:chr17:20022481-20022260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):121, 134

               
               
               Conread position:1069-1291
               
               
               Cow position:chr17:20032879-20032654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1069-1294
               
               
               Cow position:chr17:21599650-21599421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):106, 95

               
               
               Conread position:1069-1295
               
               
               Cow position:chr17:1463298-1463070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:1069-1296
               
               
               Cow position:chr17:20905066-20904849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr17:9932266-9932070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1280
               
               
               Cow position:chr17:24004406-24004617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:1070-1282
               
               
               Cow position:chr17:29026105-29026320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:1070-1288
               
               
               Cow position:chr17:3467786-3468004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):209, 113

               
               
               Conread position:1070-1288
               
               
               Cow position:chr17:15102860-15102638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr17:25117918-25118138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):108, 94

               
               
               Conread position:1070-1291
               
               
               Cow position:chr17:21973096-21972875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 202

               
               
               Conread position:1070-1294
               
               
               Cow position:chr17:16868234-16868018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1070-1294
               
               
               Cow position:chr17:18201791-18202018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 101

               
               
               Conread position:1071-1280
               
               
               Cow position:chr17:20072065-20071860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 153

               
               
               Conread position:1071-1296
               
               
               Cow position:chr17:35149498-35149268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):20, 113

               
               
               Conread position:1073-1278
               
               
               Cow position:chr17:33933708-33933507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:1073-1288
               
               
               Cow position:chr17:15354968-15355185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:1073-1295
               
               
               Cow position:chr17:21472142-21471928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):121, 57

               
               
               Conread position:1074-1283
               
               
               Cow position:chr17:43315248-43315044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1075-1296
               
               
               Cow position:chr17:12959145-12959357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):168, 100

               
               
               Conread position:1076-1283
               
               
               Cow position:chr17:908780-908985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1078-1283
               
               
               Cow position:chr17:6268836-6268630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):103, 10

               
               
               Conread position:1079-1283
               
               
               Cow position:chr17:16438678-16438472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 87

               
               
               Conread position:1080-1278
               
               
               Cow position:chr17:24883527-24883329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):118, 99

               
               
               Conread position:1080-1282
               
               
               Cow position:chr17:25511289-25511487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr17:40412627-40412826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):189, 98

               
               
               Conread position:1080-1286
               
               
               Cow position:chr17:21676934-21677140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1080-1288
               
               
               Cow position:chr17:24895117-24895327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 167

               
               
               Conread position:1080-1296
               
               
               Cow position:chr17:5423025-5422820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1081-1283
               
               
               Cow position:chr17:22051546-22051345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):5, 99

               
               
               Conread position:1082-1266
               
               
               Cow position:chr17:5027414-5027235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chr17:32027407-32027201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chr17:36523001-36522797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 84

               
               
               Conread position:1082-1284
               
               
               Cow position:chr17:5421724-5421929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1083-1273
               
               
               Cow position:chr17:40741695-40741890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 89

               
               
               Conread position:1083-1279
               
               
               Cow position:chr17:15883718-15883917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1083-1279
               
               
               Cow position:chr17:39963924-39964120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 81

               
               
               Conread position:1083-1283
               
               
               Cow position:chr17:12215211-12215007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1083-1294
               
               
               Cow position:chr17:17222387-17222601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr17:20929288-20929500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):109, 194

               
               
               Conread position:1084-1283
               
               
               Cow position:chr17:27730591-27730793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:1084-1296
               
               
               Cow position:chr17:6786984-6787198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):115, 96

               
               
               Conread position:1085-1278
               
               
               Cow position:chr17:15728522-15728710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):184, 86

               
               
               Conread position:1085-1284
               
               
               Cow position:chr17:18720398-18720205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1085-1285
               
               
               Cow position:chr17:35043875-35043688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1085-1287
               
               
               Cow position:chr17:44234299-44234495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1085-1288
               
               
               Cow position:chr17:10016328-10016527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):112, 67

               
               
               Conread position:1085-1288
               
               
               Cow position:chr17:26225076-26225280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:1086-1272
               
               
               Cow position:chr17:20359162-20359351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1086-1283
               
               
               Cow position:chr17:1025775-1025588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:1086-1285
               
               
               Cow position:chr17:25473230-25473033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1086-1289
               
               
               Cow position:chr17:12963557-12963362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1086-1296
               
               
               Cow position:chr17:21718947-21718739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1087-1241
               
               
               Cow position:chr17:25348419-25348571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:1087-1296
               
               
               Cow position:chr17:9078170-9077953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1088-1285
               
               
               Cow position:chr17:14025859-14025659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 183

               
               
               Conread position:1088-1289
               
               
               Cow position:chr17:6761796-6761600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 95

               
               
               Conread position:1088-1296
               
               
               Cow position:chr17:37522995-37523209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 78

               
               
               Conread position:1089-1273
               
               
               Cow position:chr17:7711490-7711672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:1089-1279
               
               
               Cow position:chr17:22081463-22081281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):179, 60

               
               
               Conread position:1089-1283
               
               
               Cow position:chr17:33164763-33164574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:1089-1296
               
               
               Cow position:chr17:33155102-33154900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1090-1258
               
               
               Cow position:chr17:40852024-40852189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:1090-1265
               
               
               Cow position:chr17:24767234-24767060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1090-1296
               
               
               Cow position:chr17:3387771-3387980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 69

               
               
               Conread position:1092-1296
               
               
               Cow position:chr17:2729856-2729658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1093-1296
               
               
               Cow position:chr17:27795711-27795914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:1094-1283
               
               
               Cow position:chr17:11080795-11080599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1094-1288
               
               
               Cow position:chr17:20881751-20881568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):181, 84

               
               
               Conread position:1096-1281
               
               
               Cow position:chr17:20913170-20913352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1096-1296
               
               
               Cow position:chr17:11839782-11839983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):109, 75

               
               
               Conread position:1098-1296
               
               
               Cow position:chr17:21236584-21236786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:1099-1262
               
               
               Cow position:chr17:41429524-41429363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):114, 80

               
               
               Conread position:1099-1296
               
               
               Cow position:chr17:11921102-11920904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 188

               
               
               Conread position:1100-1285
               
               
               Cow position:chr17:20836155-20836338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1102-1274
               
               
               Cow position:chr17:19544167-19543995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 52

               
               
               Conread position:1107-1265
               
               
               Cow position:chr17:24773750-24773904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1108-1288
               
               
               Cow position:chr17:31480966-31480779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1108-1296
               
               
               Cow position:chr17:6767189-6766999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):57, 67

               
               
               Conread position:1108-1296
               
               
               Cow position:chr17:34772578-34772768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):73, 59

               
               
               Conread position:1112-1281
               
               
               Cow position:chr17:13297456-13297629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 59

               
               
               Conread position:1117-1276
               
               
               Cow position:chr17:9260531-9260372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1117-1291
               
               
               Cow position:chr17:38169664-38169489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 50

               
               
               Conread position:1117-1295
               
               
               Cow position:chr17:30977101-30977274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1117-1296
               
               
               Cow position:chr17:17782136-17782310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1119-1281
               
               
               Cow position:chr17:15103657-15103498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1119-1296
               
               
               Cow position:chr17:27606600-27606771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1123-1286
               
               
               Cow position:chr17:35051701-35051869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1126-1293
               
               
               Cow position:chr17:22241094-22241264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):68, 57

               
               
               Conread position:1132-1285
               
               
               Cow position:chr17:24612746-24612893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1133-1283
               
               
               Cow position:chr17:8809408-8809262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1134-1293
               
               
               Cow position:chr17:20783096-20782939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):145, 58

               
               
               Conread position:1137-1282
               
               
               Cow position:chr17:22223816-22223959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1154-1288
               
               
               Cow position:chr17:20930420-20930553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:1049-1278
               
               
               Cow position:chr18:2108187-2108415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):149, 34

               
               
               Conread position:1055-1296
               
               
               Cow position:chr18:18843959-18844194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:1060-1295
               
               
               Cow position:chr18:50004750-50004521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):215, 15

               
               
               Conread position:1063-1283
               
               
               Cow position:chr18:51178774-51178540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 12

               
               
               Conread position:1065-1278
               
               
               Cow position:chr18:4489953-4489733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:1067-1273
               
               
               Cow position:chr18:33158900-33159105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1067-1279
               
               
               Cow position:chr18:15809843-15809643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr18:11779610-11779826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):209, 119

               
               
               Conread position:1068-1255
               
               
               Cow position:chr18:34834454-34834640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:1068-1258
               
               
               Cow position:chr18:29356666-29356486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1259
               
               
               Cow position:chr18:11183900-11184087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr18:49841240-49841438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1068-1273
               
               
               Cow position:chr18:6310042-6310242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:1068-1273
               
               
               Cow position:chr18:9365877-9366084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr18:9089658-9089857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 49

               
               
               Conread position:1068-1277
               
               
               Cow position:chr18:28930678-28930475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr18:49038420-49038620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr18:2146621-2146424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr18:50359290-50359493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr18:19143551-19143333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:1068-1281
               
               
               Cow position:chr18:30341222-30341012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:1068-1281
               
               
               Cow position:chr18:31082390-31082173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr18:44262589-44262793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:1068-1281
               
               
               Cow position:chr18:47511964-47512165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):154, 110

               
               
               Conread position:1068-1282
               
               
               Cow position:chr18:4884559-4884348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:1068-1282
               
               
               Cow position:chr18:32252210-32251994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):106, 174

               
               
               Conread position:1068-1283
               
               
               Cow position:chr18:346539-346322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:1068-1283
               
               
               Cow position:chr18:9974370-9974158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr18:12775826-12775608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr18:24719271-24719482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):195, 110

               
               
               Conread position:1068-1283
               
               
               Cow position:chr18:45898850-45899068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr18:52413923-52414140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):8, 183

               
               
               Conread position:1068-1283
               
               
               Cow position:chr18:55692774-55692991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):105, 92

               
               
               Conread position:1068-1284
               
               
               Cow position:chr18:25106903-25107121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:1068-1284
               
               
               Cow position:chr18:51643407-51643196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr18:50095440-50095235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:1068-1288
               
               
               Cow position:chr18:11867295-11867515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:1068-1288
               
               
               Cow position:chr18:12117890-12117676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:1068-1288
               
               
               Cow position:chr18:20641538-20641324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr18:23630646-23630438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr18:43796997-43796781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):201, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr18:44917715-44917932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):201, 149

               
               
               Conread position:1068-1288
               
               
               Cow position:chr18:55000783-55000559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 50

               
               
               Conread position:1068-1291
               
               
               Cow position:chr18:2773434-2773205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr18:2776937-2776708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr18:6470053-6470275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):211, 119

               
               
               Conread position:1068-1291
               
               
               Cow position:chr18:15517213-15516993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):200, 79

               
               
               Conread position:1068-1292
               
               
               Cow position:chr18:22569108-22568886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):211, 120

               
               
               Conread position:1068-1294
               
               
               Cow position:chr18:38601927-38601701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:1068-1295
               
               
               Cow position:chr18:44909011-44909237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):86, 94

               
               
               Conread position:1068-1295
               
               
               Cow position:chr18:45558105-45558328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):45, 112

               
               
               Conread position:1068-1295
               
               
               Cow position:chr18:50632484-50632262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr18:9029568-9029801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:1068-1296
               
               
               Cow position:chr18:12584881-12584657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):201, 119

               
               
               Conread position:1068-1296
               
               
               Cow position:chr18:17391035-17390804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):125, 63

               
               
               Conread position:1068-1296
               
               
               Cow position:chr18:18592431-18592648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr18:23648880-23649114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):99, 132

               
               
               Conread position:1068-1296
               
               
               Cow position:chr18:42212403-42212628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1296
               
               
               Cow position:chr18:52637571-52637341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr18:55505365-55505590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):205, 47

               
               
               Conread position:1069-1268
               
               
               Cow position:chr18:3085558-3085350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1069-1276
               
               
               Cow position:chr18:11672002-11672218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1069-1276
               
               
               Cow position:chr18:52649389-52649174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1069-1277
               
               
               Cow position:chr18:42479628-42479414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):7, 107

               
               
               Conread position:1069-1285
               
               
               Cow position:chr18:12023677-12023466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1069-1285
               
               
               Cow position:chr18:39662738-39662955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 113

               
               
               Conread position:1069-1288
               
               
               Cow position:chr18:7965191-7965410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 90

               
               
               Conread position:1069-1288
               
               
               Cow position:chr18:55119831-55120043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 128

               
               
               Conread position:1069-1289
               
               
               Cow position:chr18:10904809-10905025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1069-1289
               
               
               Cow position:chr18:51757053-51757272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:1069-1289
               
               
               Cow position:chr18:52251898-52251675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):130, 102

               
               
               Conread position:1069-1290
               
               
               Cow position:chr18:19640931-19641152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 102

               
               
               Conread position:1069-1295
               
               
               Cow position:chr18:4495927-4495704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 93

               
               
               Conread position:1069-1295
               
               
               Cow position:chr18:10954427-10954647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):147, 60

               
               
               Conread position:1069-1295
               
               
               Cow position:chr18:20126266-20126474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1069-1295
               
               
               Cow position:chr18:47824810-47824592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr18:17649780-17649554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 124

               
               
               Conread position:1069-1296
               
               
               Cow position:chr18:30225571-30225341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):117, 97

               
               
               Conread position:1070-1261
               
               
               Cow position:chr18:15613900-15613714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1070-1269
               
               
               Cow position:chr18:55499032-55499228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr18:42293095-42292894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):198, 85

               
               
               Conread position:1070-1278
               
               
               Cow position:chr18:47802130-47801929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1070-1280
               
               
               Cow position:chr18:28657951-28657747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1281
               
               
               Cow position:chr18:4626825-4626619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):199, 11

               
               
               Conread position:1070-1283
               
               
               Cow position:chr18:9040748-9040529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1070-1283
               
               
               Cow position:chr18:10977250-10977043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr18:11691448-11691229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):119, 61

               
               
               Conread position:1070-1288
               
               
               Cow position:chr18:37189334-37189112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1070-1291
               
               
               Cow position:chr18:3180371-3180590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1070-1296
               
               
               Cow position:chr18:1571275-1571052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):168, 29

               
               
               Conread position:1071-1282
               
               
               Cow position:chr18:9010669-9010875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1071-1283
               
               
               Cow position:chr18:4152593-4152381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 109

               
               
               Conread position:1072-1284
               
               
               Cow position:chr18:8171123-8170918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1073-1265
               
               
               Cow position:chr18:22516572-22516382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1073-1281
               
               
               Cow position:chr18:38937784-38937990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1073-1284
               
               
               Cow position:chr18:35535183-35534977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1073-1287
               
               
               Cow position:chr18:6881390-6881184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:1074-1278
               
               
               Cow position:chr18:12242241-12242444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):101, 38

               
               
               Conread position:1075-1277
               
               
               Cow position:chr18:45903929-45903730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1075-1289
               
               
               Cow position:chr18:25598267-25598056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1076-1287
               
               
               Cow position:chr18:7952170-7952386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:1079-1275
               
               
               Cow position:chr18:28322626-28322816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1079-1278
               
               
               Cow position:chr18:6829163-6828954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 120

               
               
               Conread position:1080-1268
               
               
               Cow position:chr18:7945168-7945354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:1080-1275
               
               
               Cow position:chr18:11790895-11791082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1080-1281
               
               
               Cow position:chr18:48407709-48407902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr18:35786026-35786226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):195, 98

               
               
               Conread position:1080-1286
               
               
               Cow position:chr18:51383427-51383224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1080-1296
               
               
               Cow position:chr18:2794001-2793789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):195, 98

               
               
               Conread position:1082-1283
               
               
               Cow position:chr18:19687996-19688201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 109

               
               
               Conread position:1082-1283
               
               
               Cow position:chr18:43472173-43472377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1082-1296
               
               
               Cow position:chr18:23169550-23169765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1082-1296
               
               
               Cow position:chr18:23623661-23623445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):111, 84

               
               
               Conread position:1082-1296
               
               
               Cow position:chr18:53795457-53795671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:1083-1283
               
               
               Cow position:chr18:22180795-22180608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):196, 18

               
               
               Conread position:1083-1288
               
               
               Cow position:chr18:22790115-22789912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):192, 96

               
               
               Conread position:1083-1289
               
               
               Cow position:chr18:16659459-16659250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1084-1280
               
               
               Cow position:chr18:31159299-31159103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):87, 91

               
               
               Conread position:1084-1288
               
               
               Cow position:chr18:37188023-37187817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 134

               
               
               Conread position:1084-1288
               
               
               Cow position:chr18:41702811-41703011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1084-1291
               
               
               Cow position:chr18:5632242-5632445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1084-1292
               
               
               Cow position:chr18:8208451-8208240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):105, 87

               
               
               Conread position:1084-1295
               
               
               Cow position:chr18:10214217-10214007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:1084-1296
               
               
               Cow position:chr18:47416976-47417183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1084-1296
               
               
               Cow position:chr18:49970679-49970466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):104, 164

               
               
               Conread position:1085-1283
               
               
               Cow position:chr18:11856876-11857068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1085-1283
               
               
               Cow position:chr18:14225369-14225560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1085-1283
               
               
               Cow position:chr18:34444758-34444565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1085-1283
               
               
               Cow position:chr18:49603068-49602870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1085-1285
               
               
               Cow position:chr18:1954614-1954406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):118, 94

               
               
               Conread position:1085-1288
               
               
               Cow position:chr18:31557185-31556980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 97

               
               
               Conread position:1086-1261
               
               
               Cow position:chr18:43125062-43125227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1086-1268
               
               
               Cow position:chr18:29065407-29065235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1086-1277
               
               
               Cow position:chr18:4485583-4485762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1086-1282
               
               
               Cow position:chr18:48713527-48713713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:1087-1288
               
               
               Cow position:chr18:8949818-8949622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1088-1288
               
               
               Cow position:chr18:29188364-29188572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1089-1288
               
               
               Cow position:chr18:41724839-41724638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):85, 159

               
               
               Conread position:1090-1275
               
               
               Cow position:chr18:24022598-24022779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1090-1276
               
               
               Cow position:chr18:10576090-10576268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):5, 86

               
               
               Conread position:1090-1278
               
               
               Cow position:chr18:38985679-38985858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):153, 75

               
               
               Conread position:1090-1283
               
               
               Cow position:chr18:33896437-33896242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):123, 6

               
               
               Conread position:1091-1273
               
               
               Cow position:chr18:42432105-42431930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1092-1288
               
               
               Cow position:chr18:46276320-46276120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:1096-1293
               
               
               Cow position:chr18:5189707-5189509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 86

               
               
               Conread position:1099-1261
               
               
               Cow position:chr18:81961-82119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1103-1264
               
               
               Cow position:chr18:306726-306563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1104-1274
               
               
               Cow position:chr18:21143970-21143805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:1105-1279
               
               
               Cow position:chr18:9596178-9596345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1106-1281
               
               
               Cow position:chr18:49440837-49441013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1106-1283
               
               
               Cow position:chr18:21528643-21528821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:1106-1285
               
               
               Cow position:chr18:1399359-1399178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1106-1296
               
               
               Cow position:chr18:22045417-22045227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 25

               
               
               Conread position:1108-1280
               
               
               Cow position:chr18:55722499-55722670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):161, 67

               
               
               Conread position:1112-1270
               
               
               Cow position:chr18:44548744-44548587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1115-1279
               
               
               Cow position:chr18:17007475-17007316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:1117-1284
               
               
               Cow position:chr18:17974637-17974797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1117-1284
               
               
               Cow position:chr18:47096436-47096596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr18:50263916-50263753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr18:50276236-50276065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 71

               
               
               Conread position:1117-1296
               
               
               Cow position:chr18:41025122-41024932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1124-1283
               
               
               Cow position:chr18:4907161-4907316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:1130-1275
               
               
               Cow position:chr18:6102943-6102801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1134-1288
               
               
               Cow position:chr18:2553893-2553740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):148, 45

               
               
               Conread position:1136-1288
               
               
               Cow position:chr18:41257895-41257739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1141-1277
               
               
               Cow position:chr18:18520770-18520635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:1141-1284
               
               
               Cow position:chr18:30247973-30247832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1045-1276
               
               
               Cow position:chr19:46159980-46160204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):125, 134

               
               
               Conread position:1055-1264
               
               
               Cow position:chr19:41584936-41585147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1055-1288
               
               
               Cow position:chr19:28924724-28924959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):114, 109

               
               
               Conread position:1056-1278
               
               
               Cow position:chr19:33988036-33988259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):48, 79

               
               
               Conread position:1060-1283
               
               
               Cow position:chr19:11110760-11110534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:1061-1296
               
               
               Cow position:chr19:41024197-41024427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1067-1265
               
               
               Cow position:chr19:21378490-21378290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):106, 112

               
               
               Conread position:1067-1266
               
               
               Cow position:chr19:23394766-23394962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1067-1277
               
               
               Cow position:chr19:11646546-11646752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1067-1278
               
               
               Cow position:chr19:34654631-34654420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):202, 50

               
               
               Conread position:1067-1281
               
               
               Cow position:chr19:15887341-15887124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):134, 111

               
               
               Conread position:1067-1283
               
               
               Cow position:chr19:24005634-24005846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1067-1288
               
               
               Cow position:chr19:39385062-39384849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):142, 112

               
               
               Conread position:1067-1290
               
               
               Cow position:chr19:51307125-51307350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 130

               
               
               Conread position:1067-1291
               
               
               Cow position:chr19:12052867-12052645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):148, 59

               
               
               Conread position:1067-1291
               
               
               Cow position:chr19:12067724-12067946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):148, 59

               
               
               Conread position:1067-1296
               
               
               Cow position:chr19:4297666-4297895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):209, 100

               
               
               Conread position:1068-1258
               
               
               Cow position:chr19:39057222-39057417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr19:33913507-33913702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr19:13488522-13488330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:1068-1267
               
               
               Cow position:chr19:3497970-3497769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):139, 46

               
               
               Conread position:1068-1272
               
               
               Cow position:chr19:34608217-34608016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):135, 47

               
               
               Conread position:1068-1273
               
               
               Cow position:chr19:10538571-10538374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr19:18129536-18129744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):107, 55

               
               
               Conread position:1068-1275
               
               
               Cow position:chr19:35762271-35762069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:1068-1276
               
               
               Cow position:chr19:10930436-10930239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1068-1276
               
               
               Cow position:chr19:19549565-19549368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr19:10735178-10734974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):128, 40

               
               
               Conread position:1068-1277
               
               
               Cow position:chr19:24144998-24145209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 93

               
               
               Conread position:1068-1278
               
               
               Cow position:chr19:42768118-42767914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:1068-1278
               
               
               Cow position:chr19:48960378-48960582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr19:16105100-16104893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr19:24692988-24693194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr19:17972279-17972077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr19:22043372-22043164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):201, 80

               
               
               Conread position:1068-1282
               
               
               Cow position:chr19:18316970-18317186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr19:16032698-16032915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr19:23889507-23889293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr19:37467080-37466867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):136, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr19:38500147-38500350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):175, 47

               
               
               Conread position:1068-1283
               
               
               Cow position:chr19:39751448-39751665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 119

               
               
               Conread position:1068-1283
               
               
               Cow position:chr19:41497664-41497449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:1068-1283
               
               
               Cow position:chr19:41946163-41946376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):106, 150

               
               
               Conread position:1068-1284
               
               
               Cow position:chr19:15719637-15719433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1284
               
               
               Cow position:chr19:34955718-34955519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr19:23087964-23088177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1286
               
               
               Cow position:chr19:7637255-7637038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1068-1286
               
               
               Cow position:chr19:14632056-14631844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1068-1286
               
               
               Cow position:chr19:25763094-25763302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1286
               
               
               Cow position:chr19:49221641-49221426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr19:5115899-5115693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr19:21199119-21199349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr19:23756762-23756552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr19:47453412-47453628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1289
               
               
               Cow position:chr19:10213652-10213866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr19:52750778-52750558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):148, 110

               
               
               Conread position:1068-1291
               
               
               Cow position:chr19:7668682-7668897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1294
               
               
               Cow position:chr19:28447421-28447644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):181, 40

               
               
               Conread position:1068-1295
               
               
               Cow position:chr19:2577546-2577769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):207, 34

               
               
               Conread position:1068-1295
               
               
               Cow position:chr19:11984625-11984849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):208, 97

               
               
               Conread position:1068-1295
               
               
               Cow position:chr19:23378656-23378882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr19:34758022-34757786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:6601730-6601507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:7158740-7158507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:11191636-11191416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):186, 34

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:15092152-15091939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:22992412-22992180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:24062257-24062479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:26167932-26167708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):125, 97

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:31760074-31760302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:33747830-33748060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:38732119-38732346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):212, 111

               
               
               Conread position:1068-1296
               
               
               Cow position:chr19:38842579-38842347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):118, 158

               
               
               Conread position:1069-1268
               
               
               Cow position:chr19:46454828-46455020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1276
               
               
               Cow position:chr19:25832218-25832013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):174, 109

               
               
               Conread position:1069-1277
               
               
               Cow position:chr19:25726901-25726697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 103

               
               
               Conread position:1069-1277
               
               
               Cow position:chr19:52728593-52728799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1278
               
               
               Cow position:chr19:14253613-14253824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1069-1282
               
               
               Cow position:chr19:18054275-18054066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr19:21836257-21836041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):112, 101

               
               
               Conread position:1069-1283
               
               
               Cow position:chr19:33575504-33575713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:1069-1288
               
               
               Cow position:chr19:11560060-11559836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr19:52187468-52187682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1069-1289
               
               
               Cow position:chr19:47185100-47184880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:1069-1290
               
               
               Cow position:chr19:39981717-39981941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:1069-1296
               
               
               Cow position:chr19:23084836-23085065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 219

               
               
               Conread position:1070-1265
               
               
               Cow position:chr19:42517273-42517078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1070-1266
               
               
               Cow position:chr19:26976085-26975894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1070-1268
               
               
               Cow position:chr19:33903441-33903247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr19:268336-268537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1070-1283
               
               
               Cow position:chr19:3621412-3621623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):166, 87

               
               
               Conread position:1070-1283
               
               
               Cow position:chr19:24759900-24759693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:1070-1283
               
               
               Cow position:chr19:40127184-40126971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):138, 109

               
               
               Conread position:1070-1288
               
               
               Cow position:chr19:55358029-55358238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1293
               
               
               Cow position:chr19:10238719-10238938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1070-1295
               
               
               Cow position:chr19:7148081-7147851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):124, 85

               
               
               Conread position:1070-1295
               
               
               Cow position:chr19:38410848-38411078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:1071-1283
               
               
               Cow position:chr19:33044135-33043923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:1073-1286
               
               
               Cow position:chr19:39576583-39576378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1073-1295
               
               
               Cow position:chr19:33033450-33033239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1074-1288
               
               
               Cow position:chr19:16096568-16096354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:1074-1296
               
               
               Cow position:chr19:44572069-44572295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):132, 34

               
               
               Conread position:1075-1278
               
               
               Cow position:chr19:25835340-25835148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1075-1288
               
               
               Cow position:chr19:10186492-10186706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 40

               
               
               Conread position:1076-1283
               
               
               Cow position:chr19:12761115-12760905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):122, 89

               
               
               Conread position:1079-1265
               
               
               Cow position:chr19:19916429-19916247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1079-1281
               
               
               Cow position:chr19:35107520-35107709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):190, 76

               
               
               Conread position:1079-1287
               
               
               Cow position:chr19:4586555-4586351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1079-1295
               
               
               Cow position:chr19:46094645-46094421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1080-1247
               
               
               Cow position:chr19:10545711-10545548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1080-1278
               
               
               Cow position:chr19:37067132-37067322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr19:28810325-28810122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):58, 133

               
               
               Conread position:1080-1283
               
               
               Cow position:chr19:42694988-42695183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):94, 79

               
               
               Conread position:1080-1285
               
               
               Cow position:chr19:52356244-52356448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1080-1285
               
               
               Cow position:chr19:53189866-53189654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1080-1288
               
               
               Cow position:chr19:11816731-11816524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):94, 135

               
               
               Conread position:1080-1296
               
               
               Cow position:chr19:6417605-6417818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):188, 16

               
               
               Conread position:1082-1275
               
               
               Cow position:chr19:25854888-25854693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1278
               
               
               Cow position:chr19:5522161-5521969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chr19:6278179-6278383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:1082-1283
               
               
               Cow position:chr19:20666076-20665872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):99, 81

               
               
               Conread position:1082-1283
               
               
               Cow position:chr19:22959879-22959675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr19:55160782-55160985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):104, 84

               
               
               Conread position:1082-1288
               
               
               Cow position:chr19:15988003-15987792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1082-1288
               
               
               Cow position:chr19:51905537-51905748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1083-1265
               
               
               Cow position:chr19:36777030-36777215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 83

               
               
               Conread position:1083-1288
               
               
               Cow position:chr19:20379037-20378836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1083-1295
               
               
               Cow position:chr19:14581358-14581565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:1083-1296
               
               
               Cow position:chr19:31763486-31763704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:1083-1296
               
               
               Cow position:chr19:33912629-33912419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 84

               
               
               Conread position:1084-1283
               
               
               Cow position:chr19:17354854-17355053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 87

               
               
               Conread position:1084-1283
               
               
               Cow position:chr19:20700428-20700630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 103

               
               
               Conread position:1084-1288
               
               
               Cow position:chr19:42776429-42776632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:1084-1289
               
               
               Cow position:chr19:8185199-8185405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):115, 87

               
               
               Conread position:1084-1290
               
               
               Cow position:chr19:2221079-2220872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 101

               
               
               Conread position:1084-1296
               
               
               Cow position:chr19:2068263-2068473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):193, 87

               
               
               Conread position:1084-1296
               
               
               Cow position:chr19:30227516-30227727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 98

               
               
               Conread position:1084-1296
               
               
               Cow position:chr19:36845246-36845452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1085-1279
               
               
               Cow position:chr19:36978264-36978461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:1085-1282
               
               
               Cow position:chr19:26269237-26269033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 93

               
               
               Conread position:1085-1285
               
               
               Cow position:chr19:29368397-29368591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1085-1285
               
               
               Cow position:chr19:29625902-29626096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1085-1289
               
               
               Cow position:chr19:43413778-43413979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:1085-1292
               
               
               Cow position:chr19:35920849-35921054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):110, 82

               
               
               Conread position:1086-1263
               
               
               Cow position:chr19:23832595-23832413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1086-1273
               
               
               Cow position:chr19:34288020-34288199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):170, 79

               
               
               Conread position:1086-1283
               
               
               Cow position:chr19:52694310-52694498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:1086-1288
               
               
               Cow position:chr19:55438702-55438909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):89, 21

               
               
               Conread position:1086-1291
               
               
               Cow position:chr19:6914738-6914945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:1086-1291
               
               
               Cow position:chr19:13996431-13996221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1086-1296
               
               
               Cow position:chr19:36177014-36177211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1088-1288
               
               
               Cow position:chr19:34420409-34420609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):181, 108

               
               
               Conread position:1088-1295
               
               
               Cow position:chr19:31127353-31127142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:1089-1270
               
               
               Cow position:chr19:25526285-25526460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1089-1277
               
               
               Cow position:chr19:4100564-4100380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:1089-1288
               
               
               Cow position:chr19:26057549-26057352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:1089-1294
               
               
               Cow position:chr19:41946717-41946928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:1089-1296
               
               
               Cow position:chr19:5261334-5261548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1090-1288
               
               
               Cow position:chr19:6854923-6855116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1091-1294
               
               
               Cow position:chr19:23559385-23559591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):133, 117

               
               
               Conread position:1096-1273
               
               
               Cow position:chr19:33233591-33233766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1096-1283
               
               
               Cow position:chr19:7876219-7876408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:1096-1290
               
               
               Cow position:chr19:7558554-7558746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1097-1283
               
               
               Cow position:chr19:26176199-26176010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 70

               
               
               Conread position:1097-1296
               
               
               Cow position:chr19:22871248-22871050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 84

               
               
               Conread position:1098-1296
               
               
               Cow position:chr19:16621347-16621150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):175, 90

               
               
               Conread position:1099-1281
               
               
               Cow position:chr19:50162011-50162187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1099-1283
               
               
               Cow position:chr19:7864068-7864250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):169, 95

               
               
               Conread position:1099-1296
               
               
               Cow position:chr19:20661404-20661203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1100-1277
               
               
               Cow position:chr19:21790746-21790920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1100-1287
               
               
               Cow position:chr19:55583540-55583734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1100-1296
               
               
               Cow position:chr19:5185243-5185052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1102-1288
               
               
               Cow position:chr19:46822723-46822908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1102-1296
               
               
               Cow position:chr19:52146869-52146672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:1103-1285
               
               
               Cow position:chr19:15852942-15853121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1103-1293
               
               
               Cow position:chr19:28137169-28137351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1104-1295
               
               
               Cow position:chr19:14823272-14823459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):127, 74

               
               
               Conread position:1112-1296
               
               
               Cow position:chr19:4602670-4602492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1117-1283
               
               
               Cow position:chr19:12263992-12264150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1117-1283
               
               
               Cow position:chr19:14596718-14596890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:1117-1294
               
               
               Cow position:chr19:27968667-27968489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:1121-1292
               
               
               Cow position:chr19:49290424-49290255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1125-1287
               
               
               Cow position:chr19:53086645-53086809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 40

               
               
               Conread position:1133-1276
               
               
               Cow position:chr19:18051118-18050976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:1133-1288
               
               
               Cow position:chr19:20693914-20694061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1134-1277
               
               
               Cow position:chr19:41388808-41388948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1144-1296
               
               
               Cow position:chr19:49958926-49959075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):144, 50

               
               
               Conread position:1034-1283
               
               
               Cow position:chr2:28420448-28420701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 135

               
               
               Conread position:1037-1296
               
               
               Cow position:chr2:36178728-36178475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):152, 16

               
               
               Conread position:1039-1296
               
               
               Cow position:chr2:29395045-29394784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):166, 16

               
               
               Conread position:1051-1264
               
               
               Cow position:chr2:10439815-10440015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:1055-1278
               
               
               Cow position:chr2:80177608-80177397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1055-1296
               
               
               Cow position:chr2:56828589-56828340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 140

               
               
               Conread position:1056-1240
               
               
               Cow position:chr2:43790080-43790263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:1061-1281
               
               
               Cow position:chr2:70908340-70908129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1061-1283
               
               
               Cow position:chr2:992140-992358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1061-1296
               
               
               Cow position:chr2:55662318-55662080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:1063-1278
               
               
               Cow position:chr2:827623-827418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):206, 10

               
               
               Conread position:1065-1282
               
               
               Cow position:chr2:13684688-13684894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 111

               
               
               Conread position:1066-1296
               
               
               Cow position:chr2:42608055-42608282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:1067-1194
               
               
               Cow position:chr2:15694197-15694322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1067-1210
               
               
               Cow position:chr2:39798233-39798376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):108, 122

               
               
               Conread position:1067-1261
               
               
               Cow position:chr2:35948688-35948497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1067-1268
               
               
               Cow position:chr2:51099984-51099783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1067-1272
               
               
               Cow position:chr2:1422342-1422547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):125, 48

               
               
               Conread position:1067-1273
               
               
               Cow position:chr2:24007415-24007612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):140, 50

               
               
               Conread position:1067-1276
               
               
               Cow position:chr2:39334882-39334675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:1067-1278
               
               
               Cow position:chr2:77941677-77941472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1067-1279
               
               
               Cow position:chr2:21049336-21049133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1067-1282
               
               
               Cow position:chr2:50914021-50913810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 45

               
               
               Conread position:1067-1284
               
               
               Cow position:chr2:57733425-57733633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1285
               
               
               Cow position:chr2:46968198-46967992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1067-1286
               
               
               Cow position:chr2:13001790-13002006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):164, 48

               
               
               Conread position:1067-1287
               
               
               Cow position:chr2:44065568-44065773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1067-1287
               
               
               Cow position:chr2:50449919-50449702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1067-1288
               
               
               Cow position:chr2:19137899-19137680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1290
               
               
               Cow position:chr2:9543305-9543524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):133, 44

               
               
               Conread position:1067-1294
               
               
               Cow position:chr2:21382859-21382628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 38

               
               
               Conread position:1067-1296
               
               
               Cow position:chr2:46033326-46033551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:1067-1296
               
               
               Cow position:chr2:71622056-71621828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):202, 53

               
               
               Conread position:1068-1200
               
               
               Cow position:chr2:40466627-40466757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1206
               
               
               Cow position:chr2:72183500-72183363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1211
               
               
               Cow position:chr2:44222816-44222957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1242
               
               
               Cow position:chr2:54971168-54971341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:1068-1249
               
               
               Cow position:chr2:45535458-45535637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr2:63074860-63074680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1263
               
               
               Cow position:chr2:1762787-1762976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr2:39750107-39750304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:1068-1266
               
               
               Cow position:chr2:17492524-17492330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr2:45542407-45542213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr2:69350573-69350379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr2:77467456-77467270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr2:44170551-44170748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr2:70847270-70847072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1272
               
               
               Cow position:chr2:17841995-17841796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):175, 5

               
               
               Conread position:1068-1274
               
               
               Cow position:chr2:49717096-49716889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 112

               
               
               Conread position:1068-1275
               
               
               Cow position:chr2:38640315-38640516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1276
               
               
               Cow position:chr2:21410211-21410429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr2:31783922-31784128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr2:46351790-46351583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr2:24530360-24530564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr2:44197867-44198081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):98, 22

               
               
               Conread position:1068-1279
               
               
               Cow position:chr2:53491459-53491259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr2:971816-972021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 116

               
               
               Conread position:1068-1281
               
               
               Cow position:chr2:37619922-37619706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr2:1476402-1476613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):178, 47

               
               
               Conread position:1068-1282
               
               
               Cow position:chr2:14634176-14634388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr2:38965612-38965813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:994373-994166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:7573512-7573303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):138, 46

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:9063266-9063473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:19494206-19494420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:21074135-21073917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:33531957-33531738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:40373406-40373201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):175, 47

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:42978988-42978770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:44168060-44168269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:44714688-44714471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:46227452-46227670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:51181786-51181568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):101, 129

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:73637180-73636963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr2:81480842-81481051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1284
               
               
               Cow position:chr2:77212187-77211979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):162, 48

               
               
               Conread position:1068-1286
               
               
               Cow position:chr2:46316864-46317082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:14826268-14826492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 103

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:22677184-22677409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 97

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:29121875-29122096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):124, 55

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:33554178-33553967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:38837525-38837302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:44051303-44051517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:45642493-45642282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:46343152-46342940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:58074352-58074136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:65830345-65830124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):208, 97

               
               
               Conread position:1068-1288
               
               
               Cow position:chr2:80275301-80275081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:1068-1289
               
               
               Cow position:chr2:18621402-18621625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:1068-1289
               
               
               Cow position:chr2:28301198-28301416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):206, 7

               
               
               Conread position:1068-1289
               
               
               Cow position:chr2:82116082-82116297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr2:37009402-37009619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr2:42801032-42801248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr2:59397061-59396836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):124, 63

               
               
               Conread position:1068-1291
               
               
               Cow position:chr2:46189104-46188883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1292
               
               
               Cow position:chr2:75600714-75600925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1293
               
               
               Cow position:chr2:11656884-11657107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:1068-1294
               
               
               Cow position:chr2:41248563-41248782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1294
               
               
               Cow position:chr2:42183364-42183585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):208, 97

               
               
               Conread position:1068-1294
               
               
               Cow position:chr2:45499210-45498987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr2:40257420-40257198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):204, 111

               
               
               Conread position:1068-1295
               
               
               Cow position:chr2:41452226-41452451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr2:47090754-47090981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):104, 97

               
               
               Conread position:1068-1295
               
               
               Cow position:chr2:47879233-47879455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):207, 110

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:2485837-2486062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:13672516-13672733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:19500092-19499862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):121, 220

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:31529483-31529702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:33497212-33496980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):111, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:41147860-41148090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:43591381-43591155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 69

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:44506002-44505771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:46161949-46162170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:52345972-52345742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:58993115-58993358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:61562035-61561813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):150, 61

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:62744016-62743794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:63250414-63250196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 74

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:65269698-65269474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:69579687-69579456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 106

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:75227193-75227421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:1068-1296
               
               
               Cow position:chr2:84480509-84480282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:1069-1268
               
               
               Cow position:chr2:46202255-46202458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):86, 103

               
               
               Conread position:1069-1275
               
               
               Cow position:chr2:45575011-45574811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:1069-1278
               
               
               Cow position:chr2:79965-79760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1279
               
               
               Cow position:chr2:32660170-32660383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1069-1281
               
               
               Cow position:chr2:28330754-28330547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr2:37791504-37791286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:1069-1283
               
               
               Cow position:chr2:39334668-39334451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 98

               
               
               Conread position:1069-1283
               
               
               Cow position:chr2:71437385-71437169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):162, 119

               
               
               Conread position:1069-1283
               
               
               Cow position:chr2:82580935-82580730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1069-1285
               
               
               Cow position:chr2:46164507-46164295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr2:6160350-6160140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr2:19058146-19058363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:1069-1288
               
               
               Cow position:chr2:36124424-36124644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:1069-1289
               
               
               Cow position:chr2:12682669-12682445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 95

               
               
               Conread position:1069-1290
               
               
               Cow position:chr2:43624542-43624328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 31

               
               
               Conread position:1069-1290
               
               
               Cow position:chr2:45596975-45597191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:1069-1293
               
               
               Cow position:chr2:50905718-50905483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1069-1295
               
               
               Cow position:chr2:7194204-7194425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):126, 50

               
               
               Conread position:1069-1295
               
               
               Cow position:chr2:32264399-32264176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 148

               
               
               Conread position:1069-1295
               
               
               Cow position:chr2:56350924-56350696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):87, 215

               
               
               Conread position:1069-1296
               
               
               Cow position:chr2:18589538-18589317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:1069-1296
               
               
               Cow position:chr2:40484516-40484285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr2:72315819-72315594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):95, 112

               
               
               Conread position:1070-1210
               
               
               Cow position:chr2:24434286-24434148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1070-1264
               
               
               Cow position:chr2:77157351-77157160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1265
               
               
               Cow position:chr2:59819813-59819624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1277
               
               
               Cow position:chr2:78249733-78249939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:1070-1281
               
               
               Cow position:chr2:53652845-53653057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):128, 91

               
               
               Conread position:1070-1283
               
               
               Cow position:chr2:12950171-12949958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1070-1287
               
               
               Cow position:chr2:20947366-20947578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr2:49428375-49428595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 82

               
               
               Conread position:1070-1293
               
               
               Cow position:chr2:17805768-17805553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1070-1295
               
               
               Cow position:chr2:53650018-53650232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):140, 89

               
               
               Conread position:1070-1296
               
               
               Cow position:chr2:11599419-11599642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):199, 45

               
               
               Conread position:1070-1296
               
               
               Cow position:chr2:41462430-41462203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):207, 109

               
               
               Conread position:1070-1296
               
               
               Cow position:chr2:60091439-60091218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1071-1277
               
               
               Cow position:chr2:73094798-73094605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1071-1278
               
               
               Cow position:chr2:39068283-39068480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1071-1279
               
               
               Cow position:chr2:66959664-66959880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:1071-1296
               
               
               Cow position:chr2:51855745-51855517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:1072-1289
               
               
               Cow position:chr2:36963517-36963733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:1073-1296
               
               
               Cow position:chr2:85794972-85794750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):115, 74

               
               
               Conread position:1074-1277
               
               
               Cow position:chr2:46130155-46129966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1075-1241
               
               
               Cow position:chr2:35207913-35208073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:1075-1275
               
               
               Cow position:chr2:37614940-37615142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):102, 89

               
               
               Conread position:1075-1279
               
               
               Cow position:chr2:14884240-14884442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):126, 168

               
               
               Conread position:1075-1282
               
               
               Cow position:chr2:46052499-46052705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):146, 25

               
               
               Conread position:1075-1285
               
               
               Cow position:chr2:46120641-46120437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1079-1295
               
               
               Cow position:chr2:16847189-16847402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 10

               
               
               Conread position:1080-1277
               
               
               Cow position:chr2:40703662-40703471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1277
               
               
               Cow position:chr2:46057998-46057812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr2:16890049-16889851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:1080-1283
               
               
               Cow position:chr2:43136441-43136235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 87

               
               
               Conread position:1080-1283
               
               
               Cow position:chr2:64323242-64323443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:1080-1288
               
               
               Cow position:chr2:6952472-6952677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):188, 80

               
               
               Conread position:1080-1294
               
               
               Cow position:chr2:21003178-21003385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):136, 98

               
               
               Conread position:1080-1296
               
               
               Cow position:chr2:5604529-5604739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1080-1296
               
               
               Cow position:chr2:22371948-22371738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1081-1281
               
               
               Cow position:chr2:64306781-64306972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 26

               
               
               Conread position:1082-1283
               
               
               Cow position:chr2:66237202-66237406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):94, 85

               
               
               Conread position:1082-1294
               
               
               Cow position:chr2:9062683-9062899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 100

               
               
               Conread position:1082-1296
               
               
               Cow position:chr2:11001064-11000848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 105

               
               
               Conread position:1082-1296
               
               
               Cow position:chr2:29779532-29779315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 111

               
               
               Conread position:1082-1296
               
               
               Cow position:chr2:37097891-37097680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:1082-1296
               
               
               Cow position:chr2:41145321-41145537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 206

               
               
               Conread position:1082-1296
               
               
               Cow position:chr2:67927789-67927575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 105

               
               
               Conread position:1083-1268
               
               
               Cow position:chr2:47065115-47065303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 29

               
               
               Conread position:1083-1278
               
               
               Cow position:chr2:16481854-16481657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 87

               
               
               Conread position:1083-1282
               
               
               Cow position:chr2:45478590-45478397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr2:68292775-68292978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):98, 84

               
               
               Conread position:1083-1287
               
               
               Cow position:chr2:64465769-64465570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr2:19212048-19211849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):193, 90

               
               
               Conread position:1083-1288
               
               
               Cow position:chr2:44007426-44007637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):72, 184

               
               
               Conread position:1083-1288
               
               
               Cow position:chr2:46312447-46312646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1083-1292
               
               
               Cow position:chr2:46053477-46053691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1083-1293
               
               
               Cow position:chr2:23712880-23713092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:1083-1296
               
               
               Cow position:chr2:13468222-13468434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):109, 96

               
               
               Conread position:1083-1296
               
               
               Cow position:chr2:15348400-15348618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):86, 81

               
               
               Conread position:1083-1296
               
               
               Cow position:chr2:26361761-26361976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 98

               
               
               Conread position:1084-1273
               
               
               Cow position:chr2:30351698-30351508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):116, 94

               
               
               Conread position:1084-1277
               
               
               Cow position:chr2:15871946-15872129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1084-1281
               
               
               Cow position:chr2:2673539-2673734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1084-1282
               
               
               Cow position:chr2:58153713-58153907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:1084-1284
               
               
               Cow position:chr2:5300604-5300805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):86, 90

               
               
               Conread position:1084-1288
               
               
               Cow position:chr2:75462337-75462533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1084-1296
               
               
               Cow position:chr2:2035817-2036032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 82

               
               
               Conread position:1084-1296
               
               
               Cow position:chr2:30954589-30954374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 170

               
               
               Conread position:1084-1296
               
               
               Cow position:chr2:71486786-71486995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):185, 94

               
               
               Conread position:1085-1273
               
               
               Cow position:chr2:13695232-13695042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 135

               
               
               Conread position:1085-1288
               
               
               Cow position:chr2:37891482-37891273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):107, 190

               
               
               Conread position:1085-1294
               
               
               Cow position:chr2:18997728-18997932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1085-1295
               
               
               Cow position:chr2:4207559-4207350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):194, 116

               
               
               Conread position:1085-1296
               
               
               Cow position:chr2:78379410-78379202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 86

               
               
               Conread position:1086-1261
               
               
               Cow position:chr2:56339021-56338852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1086-1275
               
               
               Cow position:chr2:19164957-19164771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1086-1278
               
               
               Cow position:chr2:54931829-54931640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 145

               
               
               Conread position:1086-1283
               
               
               Cow position:chr2:41088089-41087899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):182, 29

               
               
               Conread position:1086-1287
               
               
               Cow position:chr2:47753598-47753385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1086-1293
               
               
               Cow position:chr2:39590268-39590469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1086-1295
               
               
               Cow position:chr2:16686558-16686755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1087-1281
               
               
               Cow position:chr2:54654604-54654410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:1087-1294
               
               
               Cow position:chr2:9476425-9476221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:1087-1296
               
               
               Cow position:chr2:44313707-44313496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:1088-1295
               
               
               Cow position:chr2:6039025-6039235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 93

               
               
               Conread position:1088-1296
               
               
               Cow position:chr2:12866361-12866146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:1089-1288
               
               
               Cow position:chr2:67596007-67595804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:1090-1282
               
               
               Cow position:chr2:68239227-68239406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1090-1295
               
               
               Cow position:chr2:59992238-59992031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 74

               
               
               Conread position:1090-1296
               
               
               Cow position:chr2:81913012-81913220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):72, 91

               
               
               Conread position:1091-1295
               
               
               Cow position:chr2:47018860-47019063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:1092-1285
               
               
               Cow position:chr2:44022788-44022595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 8

               
               
               Conread position:1094-1283
               
               
               Cow position:chr2:26574778-26574963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:1096-1282
               
               
               Cow position:chr2:12873431-12873612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1096-1294
               
               
               Cow position:chr2:81243931-81244130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 68

               
               
               Conread position:1096-1296
               
               
               Cow position:chr2:66562021-66561816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1096-1296
               
               
               Cow position:chr2:70449046-70449239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:1098-1295
               
               
               Cow position:chr2:40488828-40489021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):102, 80

               
               
               Conread position:1099-1241
               
               
               Cow position:chr2:39501062-39501200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1099-1276
               
               
               Cow position:chr2:46378770-46378593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1099-1295
               
               
               Cow position:chr2:9936633-9936437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:1099-1296
               
               
               Cow position:chr2:3128055-3127854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1099-1296
               
               
               Cow position:chr2:8083619-8083817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 65

               
               
               Conread position:1099-1296
               
               
               Cow position:chr2:42897688-42897887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 72

               
               
               Conread position:1099-1296
               
               
               Cow position:chr2:48785042-48784841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:1100-1261
               
               
               Cow position:chr2:13328980-13328823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1100-1277
               
               
               Cow position:chr2:21327238-21327409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):143, 71

               
               
               Conread position:1100-1281
               
               
               Cow position:chr2:24393676-24393488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):73, 91

               
               
               Conread position:1100-1287
               
               
               Cow position:chr2:11435310-11435493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1100-1291
               
               
               Cow position:chr2:63568734-63568923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1101-1282
               
               
               Cow position:chr2:78256315-78256495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):116, 77

               
               
               Conread position:1102-1277
               
               
               Cow position:chr2:46015945-46015774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1103-1275
               
               
               Cow position:chr2:81293854-81294027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 145

               
               
               Conread position:1103-1277
               
               
               Cow position:chr2:45619369-45619197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):94, 76

               
               
               Conread position:1106-1283
               
               
               Cow position:chr2:7908847-7909021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 69

               
               
               Conread position:1107-1283
               
               
               Cow position:chr2:1888637-1888469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):172, 71

               
               
               Conread position:1107-1283
               
               
               Cow position:chr2:16481182-16481009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1108-1296
               
               
               Cow position:chr2:38913516-38913698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:1115-1295
               
               
               Cow position:chr2:16751840-16751657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 48

               
               
               Conread position:1117-1284
               
               
               Cow position:chr2:38884382-38884218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr2:19842829-19842997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 54

               
               
               Conread position:1117-1288
               
               
               Cow position:chr2:55526733-55526562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):165, 48

               
               
               Conread position:1117-1295
               
               
               Cow position:chr2:28872933-28873110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):158, 71

               
               
               Conread position:1117-1296
               
               
               Cow position:chr2:3773286-3773105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:1117-1296
               
               
               Cow position:chr2:74070373-74070548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):164, 65

               
               
               Conread position:1118-1278
               
               
               Cow position:chr2:64562897-64562736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1120-1292
               
               
               Cow position:chr2:16412568-16412402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1121-1277
               
               
               Cow position:chr2:73981677-73981829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1122-1281
               
               
               Cow position:chr2:37920714-37920559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1123-1283
               
               
               Cow position:chr2:43139610-43139449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 65

               
               
               Conread position:1123-1285
               
               
               Cow position:chr2:84750756-84750916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):156, 29

               
               
               Conread position:1123-1296
               
               
               Cow position:chr2:51024153-51023986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1132-1278
               
               
               Cow position:chr2:1777819-1777670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1133-1288
               
               
               Cow position:chr2:39187428-39187581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):136, 27

               
               
               Conread position:1135-1295
               
               
               Cow position:chr2:47230453-47230605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:1145-1290
               
               
               Cow position:chr2:39456180-39456322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1166-1277
               
               
               Cow position:chr2:23303-23194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1061-1288
               
               
               Cow position:chr20:3599368-3599150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:1061-1296
               
               
               Cow position:chr20:6054482-6054245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:1062-1278
               
               
               Cow position:chr20:22065093-22065304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:1063-1283
               
               
               Cow position:chr20:19328418-19328647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):93, 10

               
               
               Conread position:1067-1264
               
               
               Cow position:chr20:5702757-5702951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):154, 111

               
               
               Conread position:1067-1272
               
               
               Cow position:chr20:14879822-14880023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1067-1279
               
               
               Cow position:chr20:32847378-32847587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):205, 111

               
               
               Conread position:1067-1281
               
               
               Cow position:chr20:15766143-15766362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1067-1294
               
               
               Cow position:chr20:16935277-16935063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1067-1294
               
               
               Cow position:chr20:34202668-34202899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 218

               
               
               Conread position:1067-1295
               
               
               Cow position:chr20:31740186-31739957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):86, 121

               
               
               Conread position:1068-1202
               
               
               Cow position:chr20:9412522-9412654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1237
               
               
               Cow position:chr20:32463486-32463323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr20:25162092-25161898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 119

               
               
               Conread position:1068-1275
               
               
               Cow position:chr20:36312474-36312271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):175, 96

               
               
               Conread position:1068-1277
               
               
               Cow position:chr20:398272-398070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr20:15529895-15530102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):122, 56

               
               
               Conread position:1068-1278
               
               
               Cow position:chr20:10208843-10209050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:1068-1279
               
               
               Cow position:chr20:29845085-29845299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr20:6248567-6248352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):106, 93

               
               
               Conread position:1068-1281
               
               
               Cow position:chr20:12581920-12581709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):200, 110

               
               
               Conread position:1068-1282
               
               
               Cow position:chr20:3255071-3255279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:1068-1282
               
               
               Cow position:chr20:12420584-12420373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr20:28605244-28605454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):200, 43

               
               
               Conread position:1068-1283
               
               
               Cow position:chr20:2298752-2298549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr20:7738197-7737986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr20:8578283-8578500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 199

               
               
               Conread position:1068-1283
               
               
               Cow position:chr20:14980475-14980259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):57, 114

               
               
               Conread position:1068-1283
               
               
               Cow position:chr20:20158170-20158378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr20:30755314-30755532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr20:36239281-36239499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):98, 106

               
               
               Conread position:1068-1286
               
               
               Cow position:chr20:23792638-23792846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):189, 107

               
               
               Conread position:1068-1288
               
               
               Cow position:chr20:8547102-8547310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 58

               
               
               Conread position:1068-1288
               
               
               Cow position:chr20:12239647-12239438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 48

               
               
               Conread position:1068-1288
               
               
               Cow position:chr20:14433388-14433166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:1068-1288
               
               
               Cow position:chr20:14620269-14620053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:1068-1288
               
               
               Cow position:chr20:23846631-23846414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):59, 125

               
               
               Conread position:1068-1288
               
               
               Cow position:chr20:24097035-24097249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):201, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr20:26996564-26996787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):121, 90

               
               
               Conread position:1068-1288
               
               
               Cow position:chr20:38089947-38090170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 97

               
               
               Conread position:1068-1288
               
               
               Cow position:chr20:39325425-39325646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:1068-1289
               
               
               Cow position:chr20:5364964-5365183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:1068-1289
               
               
               Cow position:chr20:24314999-24314782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):107, 75

               
               
               Conread position:1068-1293
               
               
               Cow position:chr20:29990413-29990183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:1068-1294
               
               
               Cow position:chr20:3564194-3564415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):211, 47

               
               
               Conread position:1068-1296
               
               
               Cow position:chr20:3141608-3141838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):124, 110

               
               
               Conread position:1068-1296
               
               
               Cow position:chr20:8556235-8556009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr20:14806921-14807147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):207, 110

               
               
               Conread position:1068-1296
               
               
               Cow position:chr20:14897771-14898003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1296
               
               
               Cow position:chr20:15548862-15548633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 91

               
               
               Conread position:1068-1296
               
               
               Cow position:chr20:16818453-16818681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr20:17251752-17251981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:1068-1296
               
               
               Cow position:chr20:38514813-38515051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 93

               
               
               Conread position:1069-1268
               
               
               Cow position:chr20:26041063-26040864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1069-1273
               
               
               Cow position:chr20:3148718-3148919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 110

               
               
               Conread position:1069-1275
               
               
               Cow position:chr20:11751689-11751894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:1069-1275
               
               
               Cow position:chr20:25009597-25009393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1069-1276
               
               
               Cow position:chr20:19636141-19635937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):105, 116

               
               
               Conread position:1069-1278
               
               
               Cow position:chr20:5950608-5950397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:1069-1278
               
               
               Cow position:chr20:33623517-33623316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):174, 79

               
               
               Conread position:1069-1283
               
               
               Cow position:chr20:2819578-2819796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr20:13269656-13269862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr20:40177280-40177492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1069-1293
               
               
               Cow position:chr20:14556719-14556491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 127

               
               
               Conread position:1069-1294
               
               
               Cow position:chr20:25953299-25953526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):68, 130

               
               
               Conread position:1069-1295
               
               
               Cow position:chr20:28982737-28982958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr20:24069841-24070063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1070-1237
               
               
               Cow position:chr20:19060801-19060638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:1070-1277
               
               
               Cow position:chr20:38925815-38925607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):106, 85

               
               
               Conread position:1070-1281
               
               
               Cow position:chr20:18379415-18379623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1070-1283
               
               
               Cow position:chr20:39398517-39398729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 109

               
               
               Conread position:1072-1250
               
               
               Cow position:chr20:630563-630738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1072-1268
               
               
               Cow position:chr20:39269048-39268849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):7, 113

               
               
               Conread position:1075-1296
               
               
               Cow position:chr20:7426156-7425938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):98, 104

               
               
               Conread position:1080-1282
               
               
               Cow position:chr20:13805362-13805563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:1080-1282
               
               
               Cow position:chr20:19834784-19834584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1080-1289
               
               
               Cow position:chr20:21325372-21325578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):89, 79

               
               
               Conread position:1080-1294
               
               
               Cow position:chr20:382085-381875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1080-1295
               
               
               Cow position:chr20:2204639-2204428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 85

               
               
               Conread position:1080-1295
               
               
               Cow position:chr20:35445057-35444847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chr20:15118324-15118527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):99, 84

               
               
               Conread position:1082-1283
               
               
               Cow position:chr20:39417853-39417654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:1082-1287
               
               
               Cow position:chr20:33076775-33076571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:1082-1293
               
               
               Cow position:chr20:9034168-9033956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):116, 90

               
               
               Conread position:1082-1295
               
               
               Cow position:chr20:2316377-2316167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):148, 96

               
               
               Conread position:1083-1278
               
               
               Cow position:chr20:12126255-12126058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr20:4755785-4755586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:1083-1283
               
               
               Cow position:chr20:19201580-19201783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):113, 88

               
               
               Conread position:1083-1288
               
               
               Cow position:chr20:11359584-11359385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:1083-1293
               
               
               Cow position:chr20:39016823-39016609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):72, 92

               
               
               Conread position:1083-1296
               
               
               Cow position:chr20:10200395-10200612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):112, 214

               
               
               Conread position:1083-1296
               
               
               Cow position:chr20:27315031-27315237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1084-1277
               
               
               Cow position:chr20:21428212-21428400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1084-1290
               
               
               Cow position:chr20:4945201-4944993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):114, 39

               
               
               Conread position:1084-1296
               
               
               Cow position:chr20:11611729-11611944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:1085-1284
               
               
               Cow position:chr20:27407836-27407646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:1085-1295
               
               
               Cow position:chr20:20590250-20590046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1086-1293
               
               
               Cow position:chr20:1640401-1640206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):193, 54

               
               
               Conread position:1087-1288
               
               
               Cow position:chr20:14755787-14755590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1088-1277
               
               
               Cow position:chr20:4892065-4891876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1089-1283
               
               
               Cow position:chr20:6473788-6473983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 75

               
               
               Conread position:1096-1283
               
               
               Cow position:chr20:26850724-26850534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:1096-1296
               
               
               Cow position:chr20:1824566-1824370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1099-1288
               
               
               Cow position:chr20:27323331-27323522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1099-1295
               
               
               Cow position:chr20:37357921-37358122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1100-1288
               
               
               Cow position:chr20:24491962-24491773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:1101-1295
               
               
               Cow position:chr20:4931153-4931338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1102-1283
               
               
               Cow position:chr20:16977776-16977588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 91

               
               
               Conread position:1104-1276
               
               
               Cow position:chr20:26387531-26387697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1108-1289
               
               
               Cow position:chr20:22012470-22012642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1117-1289
               
               
               Cow position:chr20:38061683-38061520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1120-1272
               
               
               Cow position:chr20:12033535-12033389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1123-1284
               
               
               Cow position:chr20:34881308-34881154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1123-1288
               
               
               Cow position:chr20:11368273-11368110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):146, 63

               
               
               Conread position:1195-1293
               
               
               Cow position:chr20:18400097-18400195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1051-1296
               
               
               Cow position:chr21:37299500-37299742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1054-1288
               
               
               Cow position:chr21:28882220-28882457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:1056-1283
               
               
               Cow position:chr21:17842954-17842725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:1057-1284
               
               
               Cow position:chr21:13883525-13883748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):91, 126

               
               
               Conread position:1059-1291
               
               
               Cow position:chr21:28907499-28907272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:1059-1295
               
               
               Cow position:chr21:22194053-22193812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:1061-1265
               
               
               Cow position:chr21:24266518-24266310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1061-1277
               
               
               Cow position:chr21:20153004-20153220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:1063-1285
               
               
               Cow position:chr21:17183965-17184192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:1063-1296
               
               
               Cow position:chr21:27521289-27521059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:1067-1210
               
               
               Cow position:chr21:33350794-33350936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:1067-1266
               
               
               Cow position:chr21:22861056-22861244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1067-1280
               
               
               Cow position:chr21:22850975-22851182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):211, 37

               
               
               Conread position:1067-1282
               
               
               Cow position:chr21:11740065-11739854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):147, 73

               
               
               Conread position:1067-1283
               
               
               Cow position:chr21:13817446-13817667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:1067-1283
               
               
               Cow position:chr21:32339687-32339476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:1067-1283
               
               
               Cow position:chr21:44251789-44251571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:1067-1288
               
               
               Cow position:chr21:8431046-8430821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):131, 98

               
               
               Conread position:1067-1294
               
               
               Cow position:chr21:20163762-20163991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):141, 120

               
               
               Conread position:1067-1295
               
               
               Cow position:chr21:24343213-24342981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):119, 99

               
               
               Conread position:1068-1211
               
               
               Cow position:chr21:19360121-19359980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1257
               
               
               Cow position:chr21:829153-828967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 68

               
               
               Conread position:1068-1268
               
               
               Cow position:chr21:20160731-20160932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 110

               
               
               Conread position:1068-1268
               
               
               Cow position:chr21:47465063-47464865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1068-1274
               
               
               Cow position:chr21:24875407-24875612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:1068-1276
               
               
               Cow position:chr21:29069272-29069061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr21:7673178-7673376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr21:8426501-8426706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):92, 99

               
               
               Conread position:1068-1277
               
               
               Cow position:chr21:10264088-10264298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 113

               
               
               Conread position:1068-1277
               
               
               Cow position:chr21:19868900-19868699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr21:30592249-30592051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):150, 26

               
               
               Conread position:1068-1278
               
               
               Cow position:chr21:21615837-21616041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):201, 102

               
               
               Conread position:1068-1278
               
               
               Cow position:chr21:40820798-40820587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr21:802262-802055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):175, 110

               
               
               Conread position:1068-1283
               
               
               Cow position:chr21:643379-643589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr21:6051558-6051774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr21:10130199-10130417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr21:12322551-12322768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:1068-1283
               
               
               Cow position:chr21:13048138-13047920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):107, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr21:17155897-17155678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):98, 86

               
               
               Conread position:1068-1283
               
               
               Cow position:chr21:33982752-33982545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr21:17519076-17519300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1068-1286
               
               
               Cow position:chr21:37480010-37480236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):63, 57

               
               
               Conread position:1068-1287
               
               
               Cow position:chr21:15012494-15012702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr21:71642-71858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr21:16604262-16604040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1288
               
               
               Cow position:chr21:28919468-28919255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):208, 97

               
               
               Conread position:1068-1289
               
               
               Cow position:chr21:3415709-3415933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):118, 102

               
               
               Conread position:1068-1289
               
               
               Cow position:chr21:11182608-11182824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr21:641642-641862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):207, 107

               
               
               Conread position:1068-1290
               
               
               Cow position:chr21:25012137-25012354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr21:27229736-27229527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr21:10004830-10004601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:1068-1296
               
               
               Cow position:chr21:18155511-18155284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr21:19561513-19561283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:1068-1296
               
               
               Cow position:chr21:32559310-32559090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):161, 110

               
               
               Conread position:1068-1296
               
               
               Cow position:chr21:36682380-36682606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):158, 110

               
               
               Conread position:1068-1296
               
               
               Cow position:chr21:37928704-37928937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:1068-1296
               
               
               Cow position:chr21:39393803-39394030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):95, 111

               
               
               Conread position:1068-1296
               
               
               Cow position:chr21:47719244-47719024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1069-1268
               
               
               Cow position:chr21:11644910-11644712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1069-1273
               
               
               Cow position:chr21:46599417-46599617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1069-1276
               
               
               Cow position:chr21:14126337-14126534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1069-1277
               
               
               Cow position:chr21:17875137-17874927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:1069-1278
               
               
               Cow position:chr21:17252922-17252713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):125, 38

               
               
               Conread position:1069-1279
               
               
               Cow position:chr21:30222401-30222607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr21:16569957-16570158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1069-1285
               
               
               Cow position:chr21:41522356-41522142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:1069-1288
               
               
               Cow position:chr21:14452290-14452507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:1069-1289
               
               
               Cow position:chr21:41621181-41621403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):89, 85

               
               
               Conread position:1069-1293
               
               
               Cow position:chr21:13580469-13580693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:1069-1293
               
               
               Cow position:chr21:44825833-44825597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 219

               
               
               Conread position:1069-1295
               
               
               Cow position:chr21:42328609-42328379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):106, 95

               
               
               Conread position:1069-1296
               
               
               Cow position:chr21:12354639-12354421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):7, 57

               
               
               Conread position:1069-1296
               
               
               Cow position:chr21:18568583-18568357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:1070-1265
               
               
               Cow position:chr21:41287736-41287545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1070-1268
               
               
               Cow position:chr21:19240816-19240624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1070-1282
               
               
               Cow position:chr21:7169745-7169955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1070-1285
               
               
               Cow position:chr21:16498576-16498785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1287
               
               
               Cow position:chr21:29214103-29213887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):104, 177

               
               
               Conread position:1070-1288
               
               
               Cow position:chr21:34654131-34654342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1070-1291
               
               
               Cow position:chr21:6851229-6851445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):211, 108

               
               
               Conread position:1070-1293
               
               
               Cow position:chr21:39403468-39403249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1070-1296
               
               
               Cow position:chr21:18059904-18059675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:1070-1296
               
               
               Cow position:chr21:32297462-32297225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:1071-1277
               
               
               Cow position:chr21:30657928-30658124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1073-1283
               
               
               Cow position:chr21:8506486-8506279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1073-1283
               
               
               Cow position:chr21:8509374-8509167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1075-1273
               
               
               Cow position:chr21:42135554-42135360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 109

               
               
               Conread position:1077-1295
               
               
               Cow position:chr21:11006706-11006484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:1079-1288
               
               
               Cow position:chr21:700726-700512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):97, 87

               
               
               Conread position:1080-1275
               
               
               Cow position:chr21:8349398-8349583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1080-1285
               
               
               Cow position:chr21:38449378-38449181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1080-1288
               
               
               Cow position:chr21:20174385-20174585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1080-1291
               
               
               Cow position:chr21:41590498-41590289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1080-1292
               
               
               Cow position:chr21:22014257-22014468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):106, 137

               
               
               Conread position:1080-1293
               
               
               Cow position:chr21:31279323-31279532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1080-1296
               
               
               Cow position:chr21:8986089-8986310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:1081-1283
               
               
               Cow position:chr21:14247203-14247406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 31

               
               
               Conread position:1082-1283
               
               
               Cow position:chr21:17637961-17638165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr21:47760837-47761041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1082-1285
               
               
               Cow position:chr21:27409663-27409466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):194, 79

               
               
               Conread position:1082-1296
               
               
               Cow position:chr21:22211322-22211541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1083-1275
               
               
               Cow position:chr21:24797727-24797916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr21:36763131-36763331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1083-1294
               
               
               Cow position:chr21:23535779-23535992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):104, 81

               
               
               Conread position:1083-1295
               
               
               Cow position:chr21:938089-938300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 79

               
               
               Conread position:1083-1296
               
               
               Cow position:chr21:6834119-6834331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 99

               
               
               Conread position:1083-1296
               
               
               Cow position:chr21:9301293-9301506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:1083-1296
               
               
               Cow position:chr21:12348835-12349050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:1083-1296
               
               
               Cow position:chr21:13656566-13656354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 87

               
               
               Conread position:1083-1296
               
               
               Cow position:chr21:38482453-38482666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:1084-1277
               
               
               Cow position:chr21:82138-82322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1084-1279
               
               
               Cow position:chr21:745246-745435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:1084-1283
               
               
               Cow position:chr21:41043248-41043047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):105, 83

               
               
               Conread position:1084-1289
               
               
               Cow position:chr21:27810461-27810667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:1084-1291
               
               
               Cow position:chr21:4108846-4109053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):90, 130

               
               
               Conread position:1084-1293
               
               
               Cow position:chr21:5214419-5214634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 131

               
               
               Conread position:1084-1295
               
               
               Cow position:chr21:27677555-27677764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:1085-1239
               
               
               Cow position:chr21:30243609-30243460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1085-1283
               
               
               Cow position:chr21:868852-868651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 100

               
               
               Conread position:1087-1283
               
               
               Cow position:chr21:20193044-20193243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 83

               
               
               Conread position:1088-1296
               
               
               Cow position:chr21:4585081-4584870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 83

               
               
               Conread position:1088-1296
               
               
               Cow position:chr21:48334716-48334503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 6

               
               
               Conread position:1090-1296
               
               
               Cow position:chr21:16793872-16794078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):58, 75

               
               
               Conread position:1093-1284
               
               
               Cow position:chr21:6713443-6713254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):32, 27

               
               
               Conread position:1093-1288
               
               
               Cow position:chr21:27744105-27744304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 91

               
               
               Conread position:1096-1270
               
               
               Cow position:chr21:7825109-7824934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:1096-1288
               
               
               Cow position:chr21:42501133-42501326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 89

               
               
               Conread position:1099-1295
               
               
               Cow position:chr21:18449839-18450036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:1102-1283
               
               
               Cow position:chr21:10657014-10656832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 63

               
               
               Conread position:1102-1288
               
               
               Cow position:chr21:19083498-19083311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 62

               
               
               Conread position:1102-1288
               
               
               Cow position:chr21:45376040-45376220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1102-1289
               
               
               Cow position:chr21:1464432-1464618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 62

               
               
               Conread position:1102-1296
               
               
               Cow position:chr21:30938577-30938386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:1103-1274
               
               
               Cow position:chr21:7460697-7460865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1104-1296
               
               
               Cow position:chr21:11678221-11678042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1106-1292
               
               
               Cow position:chr21:40930382-40930200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1106-1296
               
               
               Cow position:chr21:19220705-19220513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 65

               
               
               Conread position:1107-1268
               
               
               Cow position:chr21:37495852-37495690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:1109-1295
               
               
               Cow position:chr21:31462658-31462838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1117-1265
               
               
               Cow position:chr21:8351189-8351043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1117-1283
               
               
               Cow position:chr21:6041888-6042058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1117-1286
               
               
               Cow position:chr21:16120057-16119891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr21:742381-742546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr21:44732940-44732768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:1117-1292
               
               
               Cow position:chr21:36398459-36398293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1295
               
               
               Cow position:chr21:18056025-18055851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 55

               
               
               Conread position:1119-1288
               
               
               Cow position:chr21:39845699-39845877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1130-1296
               
               
               Cow position:chr21:12339740-12339898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1133-1296
               
               
               Cow position:chr21:29011852-29011694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1134-1285
               
               
               Cow position:chr21:11761684-11761832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1134-1295
               
               
               Cow position:chr21:42341817-42341658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):145, 60

               
               
               Conread position:1137-1282
               
               
               Cow position:chr21:37479469-37479322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 48

               
               
               Conread position:1051-1289
               
               
               Cow position:chr22:7362006-7361767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):172, 98

               
               
               Conread position:1052-1277
               
               
               Cow position:chr22:23780597-23780377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:1052-1283
               
               
               Cow position:chr22:15024680-15024913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:1054-1289
               
               
               Cow position:chr22:24890195-24890428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:1060-1275
               
               
               Cow position:chr22:6202927-6203145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 105

               
               
               Conread position:1062-1276
               
               
               Cow position:chr22:11189014-11189225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:1066-1295
               
               
               Cow position:chr22:243099-243315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1067-1241
               
               
               Cow position:chr22:4119575-4119403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1067-1265
               
               
               Cow position:chr22:10631373-10631572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):77, 151

               
               
               Conread position:1067-1269
               
               
               Cow position:chr22:10532487-10532681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):112, 97

               
               
               Conread position:1067-1278
               
               
               Cow position:chr22:18021045-18020834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:1067-1278
               
               
               Cow position:chr22:43131571-43131357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 98

               
               
               Conread position:1067-1280
               
               
               Cow position:chr22:43237421-43237200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr22:12315798-12316010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):202, 73

               
               
               Conread position:1067-1284
               
               
               Cow position:chr22:1983835-1984060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1067-1286
               
               
               Cow position:chr22:44717703-44717923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:1067-1288
               
               
               Cow position:chr22:2470253-2470030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 81

               
               
               Conread position:1067-1288
               
               
               Cow position:chr22:17152664-17152895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1067-1289
               
               
               Cow position:chr22:2109639-2109422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:1067-1289
               
               
               Cow position:chr22:27171279-27171063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):63, 116

               
               
               Conread position:1067-1294
               
               
               Cow position:chr22:8446902-8447119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:1067-1296
               
               
               Cow position:chr22:24134336-24134108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):125, 48

               
               
               Conread position:1067-1296
               
               
               Cow position:chr22:27825827-27826065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 99

               
               
               Conread position:1068-1208
               
               
               Cow position:chr22:30253188-30253329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chr22:31510392-31510250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):65, 120

               
               
               Conread position:1068-1240
               
               
               Cow position:chr22:9171396-9171566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr22:28146664-28146862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr22:31646480-31646669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):195, 110

               
               
               Conread position:1068-1273
               
               
               Cow position:chr22:19827875-19827669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:1068-1275
               
               
               Cow position:chr22:34441645-34441439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:1068-1276
               
               
               Cow position:chr22:12902859-12902661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1068-1276
               
               
               Cow position:chr22:18838240-18838445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):59, 114

               
               
               Conread position:1068-1277
               
               
               Cow position:chr22:4563350-4563552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 112

               
               
               Conread position:1068-1277
               
               
               Cow position:chr22:6215568-6215361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr22:10295027-10295224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr22:43397990-43398195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr22:38439169-38438961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):134, 118

               
               
               Conread position:1068-1279
               
               
               Cow position:chr22:25742961-25742768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr22:16094915-16094706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):121, 86

               
               
               Conread position:1068-1281
               
               
               Cow position:chr22:41982730-41982520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):126, 49

               
               
               Conread position:1068-1283
               
               
               Cow position:chr22:9668564-9668782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr22:11813735-11813522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 116

               
               
               Conread position:1068-1283
               
               
               Cow position:chr22:23249741-23249535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:1068-1283
               
               
               Cow position:chr22:38313489-38313271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr22:43977572-43977359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):208, 61

               
               
               Conread position:1068-1284
               
               
               Cow position:chr22:41898459-41898244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 74

               
               
               Conread position:1068-1286
               
               
               Cow position:chr22:16813786-16813999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr22:5616290-5616501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr22:10557268-10557476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr22:18099607-18099827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):101, 57

               
               
               Conread position:1068-1287
               
               
               Cow position:chr22:30818201-30818415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr22:1865767-1865990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):113, 102

               
               
               Conread position:1068-1288
               
               
               Cow position:chr22:4060959-4060741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr22:12803397-12803181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr22:40789554-40789762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr22:41971166-41970952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1289
               
               
               Cow position:chr22:22613094-22613313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):212, 103

               
               
               Conread position:1068-1289
               
               
               Cow position:chr22:28370934-28371140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):201, 38

               
               
               Conread position:1068-1290
               
               
               Cow position:chr22:1776047-1776272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 112

               
               
               Conread position:1068-1290
               
               
               Cow position:chr22:19460058-19459834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:1068-1291
               
               
               Cow position:chr22:6176297-6176073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:1068-1291
               
               
               Cow position:chr22:13957656-13957435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr22:37201837-37202061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):136, 97

               
               
               Conread position:1068-1294
               
               
               Cow position:chr22:1659152-1659380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):107, 182

               
               
               Conread position:1068-1295
               
               
               Cow position:chr22:285372-285151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):208, 24

               
               
               Conread position:1068-1295
               
               
               Cow position:chr22:4163967-4164197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:1068-1295
               
               
               Cow position:chr22:17193380-17193608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):118, 62

               
               
               Conread position:1068-1295
               
               
               Cow position:chr22:36432982-36432760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):141, 47

               
               
               Conread position:1068-1296
               
               
               Cow position:chr22:4108742-4108510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr22:9372509-9372742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):97, 230

               
               
               Conread position:1068-1296
               
               
               Cow position:chr22:14487923-14488154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:1068-1296
               
               
               Cow position:chr22:21526908-21527124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):211, 56

               
               
               Conread position:1068-1296
               
               
               Cow position:chr22:23265664-23265433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):105, 91

               
               
               Conread position:1068-1296
               
               
               Cow position:chr22:30998874-30999105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1069-1273
               
               
               Cow position:chr22:12892377-12892169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1069-1275
               
               
               Cow position:chr22:25221907-25221709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:1069-1279
               
               
               Cow position:chr22:16533063-16533270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 86

               
               
               Conread position:1069-1279
               
               
               Cow position:chr22:25809287-25809083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1069-1281
               
               
               Cow position:chr22:8324228-8324448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr22:4657054-4656844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:1069-1283
               
               
               Cow position:chr22:15568027-15567819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):200, 109

               
               
               Conread position:1069-1283
               
               
               Cow position:chr22:40349332-40349544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):7, 45

               
               
               Conread position:1069-1283
               
               
               Cow position:chr22:42130162-42130377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:1069-1286
               
               
               Cow position:chr22:33948984-33948772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:1069-1288
               
               
               Cow position:chr22:27275451-27275674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):129, 96

               
               
               Conread position:1069-1291
               
               
               Cow position:chr22:16541663-16541440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):130, 95

               
               
               Conread position:1069-1295
               
               
               Cow position:chr22:12157856-12157634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 110

               
               
               Conread position:1069-1295
               
               
               Cow position:chr22:17652424-17652647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):207, 117

               
               
               Conread position:1069-1296
               
               
               Cow position:chr22:6721089-6720867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr22:10161956-10162184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):217, 161

               
               
               Conread position:1069-1296
               
               
               Cow position:chr22:14545936-14545707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 98

               
               
               Conread position:1069-1296
               
               
               Cow position:chr22:23115319-23115093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 165

               
               
               Conread position:1069-1296
               
               
               Cow position:chr22:30606845-30607074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 95

               
               
               Conread position:1070-1234
               
               
               Cow position:chr22:4315620-4315787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):139, 47

               
               
               Conread position:1070-1273
               
               
               Cow position:chr22:14141352-14141149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1070-1277
               
               
               Cow position:chr22:4357083-4357279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1281
               
               
               Cow position:chr22:42617990-42618195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1283
               
               
               Cow position:chr22:8138275-8138053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1070-1283
               
               
               Cow position:chr22:11613414-11613628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:1070-1283
               
               
               Cow position:chr22:12981731-12981523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):136, 45

               
               
               Conread position:1070-1283
               
               
               Cow position:chr22:17852644-17852436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr22:14214376-14214160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):177, 109

               
               
               Conread position:1070-1288
               
               
               Cow position:chr22:44741066-44741277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1289
               
               
               Cow position:chr22:17949982-17949768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):173, 112

               
               
               Conread position:1070-1292
               
               
               Cow position:chr22:1065095-1065319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:1070-1296
               
               
               Cow position:chr22:3251004-3250765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1072-1288
               
               
               Cow position:chr22:8327738-8327946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):156, 68

               
               
               Conread position:1072-1296
               
               
               Cow position:chr22:7882547-7882770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):191, 43

               
               
               Conread position:1073-1285
               
               
               Cow position:chr22:26233625-26233837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 130

               
               
               Conread position:1073-1289
               
               
               Cow position:chr22:2100953-2100742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1074-1275
               
               
               Cow position:chr22:6360190-6359999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1074-1280
               
               
               Cow position:chr22:18259216-18259416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):195, 41

               
               
               Conread position:1075-1259
               
               
               Cow position:chr22:15068422-15068607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:1075-1283
               
               
               Cow position:chr22:4628548-4628764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1075-1286
               
               
               Cow position:chr22:21905466-21905673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):157, 103

               
               
               Conread position:1078-1283
               
               
               Cow position:chr22:2632844-2633051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 88

               
               
               Conread position:1078-1283
               
               
               Cow position:chr22:7584238-7584041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1078-1283
               
               
               Cow position:chr22:39215617-39215410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):121, 94

               
               
               Conread position:1079-1288
               
               
               Cow position:chr22:7497109-7496900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:1079-1296
               
               
               Cow position:chr22:45012754-45012546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):198, 36

               
               
               Conread position:1080-1277
               
               
               Cow position:chr22:33985800-33985611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):149, 35

               
               
               Conread position:1080-1282
               
               
               Cow position:chr22:10567714-10567517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1080-1295
               
               
               Cow position:chr22:33485616-33485408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):199, 35

               
               
               Conread position:1080-1296
               
               
               Cow position:chr22:12188481-12188260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 206

               
               
               Conread position:1080-1296
               
               
               Cow position:chr22:12195568-12195346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):114, 207

               
               
               Conread position:1080-1296
               
               
               Cow position:chr22:26188870-26189087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):110, 99

               
               
               Conread position:1081-1280
               
               
               Cow position:chr22:2550939-2550736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 125

               
               
               Conread position:1082-1283
               
               
               Cow position:chr22:2123294-2123493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):194, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr22:16273642-16273844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:1082-1283
               
               
               Cow position:chr22:35403710-35403914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:1082-1285
               
               
               Cow position:chr22:8429889-8430095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1296
               
               
               Cow position:chr22:14091221-14091002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1296
               
               
               Cow position:chr22:37066800-37066589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):189, 88

               
               
               Conread position:1083-1275
               
               
               Cow position:chr22:1588297-1588489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr22:26417286-26417482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 79

               
               
               Conread position:1083-1283
               
               
               Cow position:chr22:39602285-39602488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1083-1285
               
               
               Cow position:chr22:2876795-2876592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 92

               
               
               Conread position:1083-1285
               
               
               Cow position:chr22:12929277-12929074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 79

               
               
               Conread position:1083-1287
               
               
               Cow position:chr22:6106373-6106164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):104, 90

               
               
               Conread position:1083-1287
               
               
               Cow position:chr22:22013753-22013954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr22:1484866-1485076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):91, 83

               
               
               Conread position:1083-1288
               
               
               Cow position:chr22:5375397-5375602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 81

               
               
               Conread position:1083-1288
               
               
               Cow position:chr22:6754264-6754056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr22:23630348-23630147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):193, 57

               
               
               Conread position:1083-1288
               
               
               Cow position:chr22:33448078-33447872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):125, 199

               
               
               Conread position:1083-1289
               
               
               Cow position:chr22:4736026-4736235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:1083-1293
               
               
               Cow position:chr22:35578774-35578564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 81

               
               
               Conread position:1084-1266
               
               
               Cow position:chr22:12389103-12389287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 98

               
               
               Conread position:1084-1276
               
               
               Cow position:chr22:12829608-12829414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:1084-1277
               
               
               Cow position:chr22:6289499-6289303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:1084-1277
               
               
               Cow position:chr22:11130874-11131065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1084-1283
               
               
               Cow position:chr22:2704302-2704502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):129, 87

               
               
               Conread position:1084-1288
               
               
               Cow position:chr22:4075883-4075677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):41, 129

               
               
               Conread position:1085-1276
               
               
               Cow position:chr22:2184707-2184521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1085-1277
               
               
               Cow position:chr22:33030803-33031005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1085-1288
               
               
               Cow position:chr22:6709786-6709583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):111, 94

               
               
               Conread position:1085-1288
               
               
               Cow position:chr22:24903594-24903798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 97

               
               
               Conread position:1085-1295
               
               
               Cow position:chr22:2403887-2404093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1085-1295
               
               
               Cow position:chr22:28071564-28071772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):142, 55

               
               
               Conread position:1085-1296
               
               
               Cow position:chr22:7518560-7518770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):206, 103

               
               
               Conread position:1085-1296
               
               
               Cow position:chr22:12678417-12678204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:1086-1268
               
               
               Cow position:chr22:28493273-28493094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 60

               
               
               Conread position:1086-1279
               
               
               Cow position:chr22:28357035-28357225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:1086-1283
               
               
               Cow position:chr22:39472152-39471952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:1086-1283
               
               
               Cow position:chr22:40048563-40048760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:1086-1288
               
               
               Cow position:chr22:39508034-39507832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):183, 76

               
               
               Conread position:1086-1295
               
               
               Cow position:chr22:26056859-26056652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):182, 102

               
               
               Conread position:1087-1286
               
               
               Cow position:chr22:45684032-45683829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 144

               
               
               Conread position:1088-1279
               
               
               Cow position:chr22:8412536-8412728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):99, 90

               
               
               Conread position:1089-1288
               
               
               Cow position:chr22:1289519-1289323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1090-1278
               
               
               Cow position:chr22:33399479-33399292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:1093-1268
               
               
               Cow position:chr22:530566-530391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:1093-1283
               
               
               Cow position:chr22:8570920-8571122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1093-1283
               
               
               Cow position:chr22:10350973-10351168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1093-1283
               
               
               Cow position:chr22:15490667-15490857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1093-1289
               
               
               Cow position:chr22:29949890-29950092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):79, 72

               
               
               Conread position:1095-1277
               
               
               Cow position:chr22:36193848-36194027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1095-1278
               
               
               Cow position:chr22:9735284-9735465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1096-1277
               
               
               Cow position:chr22:13951279-13951458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):120, 83

               
               
               Conread position:1096-1295
               
               
               Cow position:chr22:8883027-8883226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):180, 63

               
               
               Conread position:1098-1287
               
               
               Cow position:chr22:17745831-17746026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1099-1282
               
               
               Cow position:chr22:39493817-39493631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:1099-1296
               
               
               Cow position:chr22:3937079-3937277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 65

               
               
               Conread position:1100-1267
               
               
               Cow position:chr22:10936831-10936663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):74, 150

               
               
               Conread position:1100-1288
               
               
               Cow position:chr22:15950363-15950182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:1101-1281
               
               
               Cow position:chr22:1304532-1304355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1103-1277
               
               
               Cow position:chr22:2201763-2201930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1104-1262
               
               
               Cow position:chr22:16655714-16655559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1104-1278
               
               
               Cow position:chr22:12741248-12741085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):165, 74

               
               
               Conread position:1106-1292
               
               
               Cow position:chr22:8357612-8357789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1107-1290
               
               
               Cow position:chr22:1074291-1074476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1108-1281
               
               
               Cow position:chr22:13891608-13891775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1108-1288
               
               
               Cow position:chr22:3430220-3430404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1109-1277
               
               
               Cow position:chr22:10594637-10594806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1109-1282
               
               
               Cow position:chr22:12207677-12207505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):170, 77

               
               
               Conread position:1117-1264
               
               
               Cow position:chr22:33566057-33565912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1278
               
               
               Cow position:chr22:5595774-5595611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr22:3257625-3257460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr22:12573241-12573412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 58

               
               
               Conread position:1117-1288
               
               
               Cow position:chr22:30684765-30684932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):158, 61

               
               
               Conread position:1117-1294
               
               
               Cow position:chr22:11790020-11790199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1117-1295
               
               
               Cow position:chr22:1105587-1105415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1117-1295
               
               
               Cow position:chr22:26786398-26786571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1117-1296
               
               
               Cow position:chr22:5779046-5778869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:1122-1268
               
               
               Cow position:chr22:18145578-18145722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1132-1288
               
               
               Cow position:chr22:29546691-29546843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1169-1296
               
               
               Cow position:chr22:20945475-20945607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1007-1269
               
               
               Cow position:chr23:21423699-21423960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 31

               
               
               Conread position:1013-1282
               
               
               Cow position:chr23:23897129-23897402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 156

               
               
               Conread position:1051-1278
               
               
               Cow position:chr23:25864723-25864491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:1055-1242
               
               
               Cow position:chr23:4501733-4501911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1067-1280
               
               
               Cow position:chr23:24685236-24685445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:1067-1281
               
               
               Cow position:chr23:5732544-5732743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1067-1281
               
               
               Cow position:chr23:20093249-20093036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):196, 35

               
               
               Conread position:1067-1283
               
               
               Cow position:chr23:38264540-38264320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:1068-1210
               
               
               Cow position:chr23:17231143-17231282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr23:2160639-2160452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr23:14350819-14351015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):120, 98

               
               
               Conread position:1068-1265
               
               
               Cow position:chr23:22586874-22587068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:1068-1267
               
               
               Cow position:chr23:7845287-7845480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1276
               
               
               Cow position:chr23:1290291-1290507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):128, 119

               
               
               Conread position:1068-1276
               
               
               Cow position:chr23:5881524-5881320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr23:16961291-16961488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr23:16690074-16689862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):108, 97

               
               
               Conread position:1068-1278
               
               
               Cow position:chr23:24966469-24966258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr23:26825064-26825266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):182, 44

               
               
               Conread position:1068-1278
               
               
               Cow position:chr23:35656405-35656612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 44

               
               
               Conread position:1068-1279
               
               
               Cow position:chr23:1222243-1222036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):201, 110

               
               
               Conread position:1068-1279
               
               
               Cow position:chr23:24509688-24509888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr23:35965140-35965353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr23:39778395-39778601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1068-1280
               
               
               Cow position:chr23:40391470-40391680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr23:16881169-16880962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):201, 132

               
               
               Conread position:1068-1283
               
               
               Cow position:chr23:1885179-1884965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:1068-1283
               
               
               Cow position:chr23:4844600-4844820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 104

               
               
               Conread position:1068-1283
               
               
               Cow position:chr23:14394661-14394877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:1068-1283
               
               
               Cow position:chr23:20539379-20539586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:1068-1283
               
               
               Cow position:chr23:22414306-22414101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):157, 43

               
               
               Conread position:1068-1283
               
               
               Cow position:chr23:37660666-37660877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr23:40275550-40275349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr23:5426427-5426647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1286
               
               
               Cow position:chr23:1760852-1760623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 214

               
               
               Conread position:1068-1287
               
               
               Cow position:chr23:2282185-2281977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr23:1194498-1194282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr23:1877902-1877685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr23:2501860-2501644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):104, 97

               
               
               Conread position:1068-1288
               
               
               Cow position:chr23:7709784-7709994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr23:10416427-10416212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1068-1294
               
               
               Cow position:chr23:18822983-18823204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):201, 105

               
               
               Conread position:1068-1295
               
               
               Cow position:chr23:1883388-1883613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:1068-1295
               
               
               Cow position:chr23:3293689-3293913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):212, 103

               
               
               Conread position:1068-1295
               
               
               Cow position:chr23:10377362-10377130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1295
               
               
               Cow position:chr23:12363624-12363399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr23:18238533-18238302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):108, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr23:187172-187399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 96

               
               
               Conread position:1068-1296
               
               
               Cow position:chr23:8698414-8698646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr23:11212501-11212725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr23:18384713-18384942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):145, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr23:40738025-40737793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:1069-1232
               
               
               Cow position:chr23:5785839-5786001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:1069-1273
               
               
               Cow position:chr23:12405825-12405623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):131, 25

               
               
               Conread position:1069-1275
               
               
               Cow position:chr23:10497693-10497896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 49

               
               
               Conread position:1069-1279
               
               
               Cow position:chr23:1337309-1337103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1069-1281
               
               
               Cow position:chr23:16582915-16582701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:1069-1282
               
               
               Cow position:chr23:18286187-18286389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr23:17597420-17597630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):7, 97

               
               
               Conread position:1069-1283
               
               
               Cow position:chr23:20744599-20744374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1069-1284
               
               
               Cow position:chr23:40501103-40500888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr23:18739471-18739247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1069-1294
               
               
               Cow position:chr23:2358875-2359095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 46

               
               
               Conread position:1069-1295
               
               
               Cow position:chr23:22238827-22238599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 178

               
               
               Conread position:1069-1296
               
               
               Cow position:chr23:3244919-3244693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1069-1296
               
               
               Cow position:chr23:6244601-6244380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):195, 38

               
               
               Conread position:1069-1296
               
               
               Cow position:chr23:26986277-26986049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:1070-1275
               
               
               Cow position:chr23:5795475-5795676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr23:385313-385104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:1070-1278
               
               
               Cow position:chr23:5395480-5395280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:1070-1281
               
               
               Cow position:chr23:1981663-1981467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr23:14523982-14524210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr23:18902056-18901852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):209, 45

               
               
               Conread position:1070-1295
               
               
               Cow position:chr23:1583523-1583737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1070-1296
               
               
               Cow position:chr23:27848992-27849212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1071-1265
               
               
               Cow position:chr23:36022788-36022602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1071-1278
               
               
               Cow position:chr23:5451316-5451525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):139, 10

               
               
               Conread position:1071-1280
               
               
               Cow position:chr23:29786349-29786137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):110, 96

               
               
               Conread position:1071-1285
               
               
               Cow position:chr23:32173865-32173648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):110, 96

               
               
               Conread position:1073-1290
               
               
               Cow position:chr23:22668506-22668294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):196, 105

               
               
               Conread position:1073-1296
               
               
               Cow position:chr23:34611489-34611277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1075-1268
               
               
               Cow position:chr23:40637259-40637457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 60

               
               
               Conread position:1075-1283
               
               
               Cow position:chr23:40095186-40095390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):168, 32

               
               
               Conread position:1075-1285
               
               
               Cow position:chr23:39267785-39267995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:1075-1290
               
               
               Cow position:chr23:33628929-33629137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1076-1282
               
               
               Cow position:chr23:16744549-16744749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1078-1287
               
               
               Cow position:chr23:26841428-26841634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1079-1278
               
               
               Cow position:chr23:9131956-9131761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1079-1288
               
               
               Cow position:chr23:39049434-39049228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1080-1279
               
               
               Cow position:chr23:24809432-24809233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:1080-1285
               
               
               Cow position:chr23:25990431-25990228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):147, 45

               
               
               Conread position:1080-1294
               
               
               Cow position:chr23:39330287-39330078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 100

               
               
               Conread position:1080-1295
               
               
               Cow position:chr23:7155687-7155481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1082-1281
               
               
               Cow position:chr23:35929958-35930154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1082-1282
               
               
               Cow position:chr23:2395588-2395391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chr23:27859796-27860000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1082-1295
               
               
               Cow position:chr23:5436635-5436419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):91, 83

               
               
               Conread position:1082-1296
               
               
               Cow position:chr23:2471010-2471228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:1082-1296
               
               
               Cow position:chr23:30357291-30357075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1083-1278
               
               
               Cow position:chr23:34356651-34356844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:1083-1288
               
               
               Cow position:chr23:22530430-22530225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):137, 96

               
               
               Conread position:1083-1296
               
               
               Cow position:chr23:307464-307681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):116, 88

               
               
               Conread position:1083-1296
               
               
               Cow position:chr23:26794904-26794691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):193, 84

               
               
               Conread position:1084-1277
               
               
               Cow position:chr23:1490371-1490556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):171, 28

               
               
               Conread position:1084-1282
               
               
               Cow position:chr23:809515-809714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:1084-1288
               
               
               Cow position:chr23:534237-534439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1084-1288
               
               
               Cow position:chr23:3234772-3234563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 78

               
               
               Conread position:1084-1291
               
               
               Cow position:chr23:4003656-4003867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1085-1277
               
               
               Cow position:chr23:6179535-6179346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 98

               
               
               Conread position:1085-1283
               
               
               Cow position:chr23:18222046-18221845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 82

               
               
               Conread position:1086-1281
               
               
               Cow position:chr23:26100363-26100164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:1086-1287
               
               
               Cow position:chr23:17392634-17392820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):189, 29

               
               
               Conread position:1086-1296
               
               
               Cow position:chr23:1614646-1614433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:1087-1278
               
               
               Cow position:chr23:5686184-5685993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1087-1283
               
               
               Cow position:chr23:17486811-17486619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:1088-1278
               
               
               Cow position:chr23:13137922-13137736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1088-1288
               
               
               Cow position:chr23:11224869-11225067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1088-1296
               
               
               Cow position:chr23:39108946-39109159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):105, 76

               
               
               Conread position:1089-1281
               
               
               Cow position:chr23:26949211-26949397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1089-1287
               
               
               Cow position:chr23:24718787-24718591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 90

               
               
               Conread position:1091-1277
               
               
               Cow position:chr23:28814392-28814581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:1092-1296
               
               
               Cow position:chr23:4646529-4646728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1093-1276
               
               
               Cow position:chr23:33232683-33232499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 72

               
               
               Conread position:1093-1282
               
               
               Cow position:chr23:4979263-4979076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):157, 40

               
               
               Conread position:1093-1288
               
               
               Cow position:chr23:15056553-15056359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):181, 95

               
               
               Conread position:1097-1276
               
               
               Cow position:chr23:16664379-16664202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:1099-1282
               
               
               Cow position:chr23:1585374-1585192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1099-1284
               
               
               Cow position:chr23:1510902-1510719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 75

               
               
               Conread position:1099-1294
               
               
               Cow position:chr23:23104462-23104268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):169, 18

               
               
               Conread position:1099-1295
               
               
               Cow position:chr23:1429801-1429611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:1099-1295
               
               
               Cow position:chr23:4416263-4416063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):99, 66

               
               
               Conread position:1102-1287
               
               
               Cow position:chr23:21638404-21638584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1103-1284
               
               
               Cow position:chr23:18822404-18822223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:1105-1287
               
               
               Cow position:chr23:33702364-33702178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:1107-1295
               
               
               Cow position:chr23:15099897-15099704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:1109-1295
               
               
               Cow position:chr23:4338312-4338127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:1117-1273
               
               
               Cow position:chr23:5603703-5603549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 62

               
               
               Conread position:1117-1283
               
               
               Cow position:chr23:20725645-20725483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr23:32479975-32479804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1188-1295
               
               
               Cow position:chr23:5608940-5608832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1061-1294
               
               
               Cow position:chr24:29606073-29605841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):112, 164

               
               
               Conread position:1063-1296
               
               
               Cow position:chr24:18302675-18302911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:1066-1278
               
               
               Cow position:chr24:37252120-37252333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:1067-1277
               
               
               Cow position:chr24:17311251-17311054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1067-1279
               
               
               Cow position:chr24:15288793-15289005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 94

               
               
               Conread position:1067-1281
               
               
               Cow position:chr24:2402402-2402198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1067-1282
               
               
               Cow position:chr24:27844562-27844352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):212, 111

               
               
               Conread position:1067-1283
               
               
               Cow position:chr24:18357086-18356876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr24:40301126-40301341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):108, 56

               
               
               Conread position:1067-1286
               
               
               Cow position:chr24:30314060-30313845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1067-1288
               
               
               Cow position:chr24:18485028-18484805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:1067-1292
               
               
               Cow position:chr24:21834993-21834774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1067-1295
               
               
               Cow position:chr24:39523483-39523258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1296
               
               
               Cow position:chr24:13948089-13948315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 58

               
               
               Conread position:1068-1206
               
               
               Cow position:chr24:39791508-39791643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1209
               
               
               Cow position:chr24:14457754-14457618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1241
               
               
               Cow position:chr24:31359288-31359457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr24:29561606-29561415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr24:42175497-42175698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:1068-1277
               
               
               Cow position:chr24:24491050-24490851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr24:2992912-2992704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:1068-1278
               
               
               Cow position:chr24:15353409-15353620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):118, 92

               
               
               Conread position:1068-1279
               
               
               Cow position:chr24:35675506-35675708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1068-1280
               
               
               Cow position:chr24:33372522-33372724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1280
               
               
               Cow position:chr24:43371211-43371421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr24:43028361-43028146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:3656399-3656182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:7913973-7914190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:13587024-13586809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:19730746-19730964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:20364443-20364235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:22114693-22114911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:23575195-23574977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:23863662-23863444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:27284788-27285005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:27349207-27348995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):126, 47

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:34079372-34079156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:1068-1283
               
               
               Cow position:chr24:42364202-42364418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):126, 99

               
               
               Conread position:1068-1288
               
               
               Cow position:chr24:11887127-11887337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr24:17309170-17308953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 58

               
               
               Conread position:1068-1289
               
               
               Cow position:chr24:7757739-7757956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1289
               
               
               Cow position:chr24:42687815-42688028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1293
               
               
               Cow position:chr24:22133138-22133357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):150, 111

               
               
               Conread position:1068-1293
               
               
               Cow position:chr24:37975014-37974792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):175, 110

               
               
               Conread position:1068-1294
               
               
               Cow position:chr24:230245-230471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):32, 138

               
               
               Conread position:1068-1294
               
               
               Cow position:chr24:43365801-43366029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 99

               
               
               Conread position:1068-1295
               
               
               Cow position:chr24:17104603-17104378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):201, 175

               
               
               Conread position:1068-1295
               
               
               Cow position:chr24:27726045-27725816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):171, 210

               
               
               Conread position:1068-1295
               
               
               Cow position:chr24:28062916-28063144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:1068-1295
               
               
               Cow position:chr24:37823494-37823716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr24:28476519-28476291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):168, 119

               
               
               Conread position:1068-1296
               
               
               Cow position:chr24:28990528-28990761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):124, 110

               
               
               Conread position:1068-1296
               
               
               Cow position:chr24:31812156-31812381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):218, 110

               
               
               Conread position:1068-1296
               
               
               Cow position:chr24:37267629-37267861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:1068-1296
               
               
               Cow position:chr24:37651692-37651913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):175, 120

               
               
               Conread position:1069-1275
               
               
               Cow position:chr24:5360687-5360884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1069-1278
               
               
               Cow position:chr24:28496614-28496407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):92, 87

               
               
               Conread position:1069-1283
               
               
               Cow position:chr24:3165786-3166000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):125, 187

               
               
               Conread position:1069-1285
               
               
               Cow position:chr24:175525-175326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 72

               
               
               Conread position:1069-1288
               
               
               Cow position:chr24:19000015-19000230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):86, 109

               
               
               Conread position:1069-1290
               
               
               Cow position:chr24:28234013-28234230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):126, 46

               
               
               Conread position:1069-1290
               
               
               Cow position:chr24:29539961-29539740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):205, 48

               
               
               Conread position:1069-1293
               
               
               Cow position:chr24:26880721-26880945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:1069-1296
               
               
               Cow position:chr24:18750671-18750905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):30, 100

               
               
               Conread position:1069-1296
               
               
               Cow position:chr24:25122312-25122530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1070-1282
               
               
               Cow position:chr24:27713436-27713230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1283
               
               
               Cow position:chr24:24227711-24227510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1070-1284
               
               
               Cow position:chr24:18474760-18474547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1070-1286
               
               
               Cow position:chr24:1269755-1269963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):204, 45

               
               
               Conread position:1070-1288
               
               
               Cow position:chr24:19623825-19624052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:1070-1288
               
               
               Cow position:chr24:27608129-27607926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr24:28510766-28510976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1070-1289
               
               
               Cow position:chr24:2379921-2380141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):105, 202

               
               
               Conread position:1070-1289
               
               
               Cow position:chr24:39238740-39238948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):168, 95

               
               
               Conread position:1070-1294
               
               
               Cow position:chr24:42984360-42984588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):99, 94

               
               
               Conread position:1070-1295
               
               
               Cow position:chr24:19800816-19801032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1070-1295
               
               
               Cow position:chr24:30235842-30236065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):126, 45

               
               
               Conread position:1070-1295
               
               
               Cow position:chr24:33098504-33098276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):132, 108

               
               
               Conread position:1070-1296
               
               
               Cow position:chr24:29985015-29984797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1071-1296
               
               
               Cow position:chr24:18730314-18730543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):115, 96

               
               
               Conread position:1073-1241
               
               
               Cow position:chr24:20874654-20874819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1073-1273
               
               
               Cow position:chr24:37650646-37650846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:1073-1288
               
               
               Cow position:chr24:3412655-3412867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1073-1295
               
               
               Cow position:chr24:5141914-5142130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):143, 121

               
               
               Conread position:1075-1261
               
               
               Cow position:chr24:31816552-31816734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1075-1278
               
               
               Cow position:chr24:16640883-16641089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1075-1283
               
               
               Cow position:chr24:21715376-21715168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 5

               
               
               Conread position:1075-1283
               
               
               Cow position:chr24:42226247-42226445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1075-1296
               
               
               Cow position:chr24:10499188-10499411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:1079-1282
               
               
               Cow position:chr24:6886989-6887187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):199, 36

               
               
               Conread position:1080-1276
               
               
               Cow position:chr24:39849907-39849718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1080-1295
               
               
               Cow position:chr24:5447289-5447070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 86

               
               
               Conread position:1080-1296
               
               
               Cow position:chr24:34272788-34273012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 214

               
               
               Conread position:1082-1283
               
               
               Cow position:chr24:22511538-22511743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr24:29260171-29260368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):194, 75

               
               
               Conread position:1082-1283
               
               
               Cow position:chr24:39143593-39143794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 102

               
               
               Conread position:1082-1296
               
               
               Cow position:chr24:32979187-32978981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1083-1276
               
               
               Cow position:chr24:18874839-18874646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1083-1279
               
               
               Cow position:chr24:39304939-39304734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1083-1281
               
               
               Cow position:chr24:3493866-3494060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr24:32891062-32890864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):181, 95

               
               
               Conread position:1083-1295
               
               
               Cow position:chr24:390086-390293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr24:352624-352408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:1083-1296
               
               
               Cow position:chr24:39911052-39910835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:1084-1281
               
               
               Cow position:chr24:19179455-19179257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 111

               
               
               Conread position:1084-1283
               
               
               Cow position:chr24:25756317-25756116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 82

               
               
               Conread position:1084-1291
               
               
               Cow position:chr24:27906420-27906628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:1085-1275
               
               
               Cow position:chr24:13610295-13610474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1085-1296
               
               
               Cow position:chr24:29677932-29677713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1086-1278
               
               
               Cow position:chr24:36775792-36775595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:1086-1278
               
               
               Cow position:chr24:43499643-43499833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 123

               
               
               Conread position:1087-1285
               
               
               Cow position:chr24:27940635-27940446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:1088-1283
               
               
               Cow position:chr24:3542286-3542484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 79

               
               
               Conread position:1090-1288
               
               
               Cow position:chr24:22689587-22689387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 81

               
               
               Conread position:1090-1295
               
               
               Cow position:chr24:18137313-18137106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 74

               
               
               Conread position:1093-1275
               
               
               Cow position:chr24:10219393-10219213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1094-1288
               
               
               Cow position:chr24:20017435-20017240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 189

               
               
               Conread position:1096-1296
               
               
               Cow position:chr24:28775563-28775359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 71

               
               
               Conread position:1097-1295
               
               
               Cow position:chr24:24165537-24165741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 70

               
               
               Conread position:1099-1293
               
               
               Cow position:chr24:17284988-17284792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 65

               
               
               Conread position:1100-1279
               
               
               Cow position:chr24:27413111-27412938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1105-1296
               
               
               Cow position:chr24:24091336-24091141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 175

               
               
               Conread position:1106-1288
               
               
               Cow position:chr24:25947857-25947673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):105, 58

               
               
               Conread position:1110-1287
               
               
               Cow position:chr24:24136393-24136223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1112-1296
               
               
               Cow position:chr24:22129627-22129449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):167, 66

               
               
               Conread position:1117-1296
               
               
               Cow position:chr24:36286585-36286763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):157, 94

               
               
               Conread position:1118-1268
               
               
               Cow position:chr24:24540474-24540326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:1119-1284
               
               
               Cow position:chr24:28256041-28255881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1120-1288
               
               
               Cow position:chr24:6488227-6488388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1120-1288
               
               
               Cow position:chr24:21656425-21656596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1121-1296
               
               
               Cow position:chr24:38006698-38006515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1133-1288
               
               
               Cow position:chr24:41925854-41926001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1061-1266
               
               
               Cow position:chr25:26072575-26072377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1061-1283
               
               
               Cow position:chr25:20008114-20008338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1061-1283
               
               
               Cow position:chr25:26701012-26701223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1061-1283
               
               
               Cow position:chr25:30852749-30852968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1063-1287
               
               
               Cow position:chr25:7216809-7217022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:1065-1199
               
               
               Cow position:chr25:34967523-34967391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1065-1280
               
               
               Cow position:chr25:19129842-19130053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1067-1274
               
               
               Cow position:chr25:31514169-31514378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1067-1277
               
               
               Cow position:chr25:4521849-4521644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 48

               
               
               Conread position:1067-1278
               
               
               Cow position:chr25:21192941-21192743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1067-1288
               
               
               Cow position:chr25:11051519-11051730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1067-1288
               
               
               Cow position:chr25:21191477-21191684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1067-1289
               
               
               Cow position:chr25:5807932-5808157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:1067-1289
               
               
               Cow position:chr25:7007900-7008128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):107, 215

               
               
               Conread position:1067-1296
               
               
               Cow position:chr25:5920932-5921165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 99

               
               
               Conread position:1068-1259
               
               
               Cow position:chr25:23245013-23244825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1260
               
               
               Cow position:chr25:9107535-9107353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr25:36872347-36872544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr25:17190754-17190569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1068-1267
               
               
               Cow position:chr25:26306215-26306016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):140, 111

               
               
               Conread position:1068-1268
               
               
               Cow position:chr25:19364070-19363872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr25:18288779-18288577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr25:9574141-9573937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr25:12510022-12509823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr25:37332047-37331847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr25:19478664-19478893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr25:20202902-20203111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr25:20348858-20349078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr25:22298626-22298835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr25:40682727-40682940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1068-1284
               
               
               Cow position:chr25:13272558-13272773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr25:9843165-9843385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):123, 186

               
               
               Conread position:1068-1285
               
               
               Cow position:chr25:22348474-22348254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 206

               
               
               Conread position:1068-1285
               
               
               Cow position:chr25:26679215-26679431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:1068-1286
               
               
               Cow position:chr25:16921808-16921588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:1068-1287
               
               
               Cow position:chr25:21893327-21893539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr25:28668062-28667842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:1068-1293
               
               
               Cow position:chr25:3744756-3744523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):103, 211

               
               
               Conread position:1068-1295
               
               
               Cow position:chr25:9990121-9989888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 209

               
               
               Conread position:1068-1296
               
               
               Cow position:chr25:7750441-7750664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):209, 112

               
               
               Conread position:1068-1296
               
               
               Cow position:chr25:13621367-13621147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr25:22178906-22179124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr25:33457721-33457939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1069-1265
               
               
               Cow position:chr25:13443421-13443222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1069-1268
               
               
               Cow position:chr25:35339200-35339002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 120

               
               
               Conread position:1069-1277
               
               
               Cow position:chr25:13823729-13823522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:1069-1277
               
               
               Cow position:chr25:19679345-19679549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr25:1840314-1840524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):147, 109

               
               
               Conread position:1069-1283
               
               
               Cow position:chr25:36873067-36872851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1069-1285
               
               
               Cow position:chr25:20523244-20523034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1069-1285
               
               
               Cow position:chr25:35762581-35762793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:1069-1288
               
               
               Cow position:chr25:5846819-5846596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:1069-1288
               
               
               Cow position:chr25:13222890-13223104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr25:15273663-15273871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1069-1295
               
               
               Cow position:chr25:26136833-26136606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 106

               
               
               Conread position:1070-1266
               
               
               Cow position:chr25:11432954-11432766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1275
               
               
               Cow position:chr25:16319149-16318955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr25:13826426-13826629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1070-1281
               
               
               Cow position:chr25:11841288-11841500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:1070-1284
               
               
               Cow position:chr25:36873342-36873134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1070-1285
               
               
               Cow position:chr25:11585509-11585734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr25:12609334-12609551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):105, 45

               
               
               Conread position:1070-1288
               
               
               Cow position:chr25:35347895-35348114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 47

               
               
               Conread position:1070-1295
               
               
               Cow position:chr25:10407426-10407196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:1070-1296
               
               
               Cow position:chr25:24573059-24573274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1070-1296
               
               
               Cow position:chr25:28597621-28597389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 212

               
               
               Conread position:1071-1284
               
               
               Cow position:chr25:18721131-18720923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 110

               
               
               Conread position:1073-1264
               
               
               Cow position:chr25:23829135-23828946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):132, 109

               
               
               Conread position:1074-1282
               
               
               Cow position:chr25:1802602-1802813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:1075-1276
               
               
               Cow position:chr25:31657281-31657084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1075-1278
               
               
               Cow position:chr25:7306287-7306488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 87

               
               
               Conread position:1075-1295
               
               
               Cow position:chr25:5637389-5637172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):201, 103

               
               
               Conread position:1075-1296
               
               
               Cow position:chr25:17918970-17919198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):80, 160

               
               
               Conread position:1076-1261
               
               
               Cow position:chr25:2624793-2624975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1080-1268
               
               
               Cow position:chr25:7380838-7380650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):116, 167

               
               
               Conread position:1081-1283
               
               
               Cow position:chr25:7035558-7035764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:1082-1276
               
               
               Cow position:chr25:7641448-7641259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:1082-1283
               
               
               Cow position:chr25:14102669-14102873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 103

               
               
               Conread position:1082-1294
               
               
               Cow position:chr25:26134045-26134263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:1082-1295
               
               
               Cow position:chr25:24115313-24115100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1082-1296
               
               
               Cow position:chr25:18294311-18294096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 85

               
               
               Conread position:1082-1296
               
               
               Cow position:chr25:21183886-21184104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:1083-1282
               
               
               Cow position:chr25:18760704-18760509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 72

               
               
               Conread position:1083-1283
               
               
               Cow position:chr25:12305280-12305482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):116, 81

               
               
               Conread position:1083-1283
               
               
               Cow position:chr25:15573392-15573594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):116, 95

               
               
               Conread position:1083-1283
               
               
               Cow position:chr25:23520024-23519834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr25:7726666-7726873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 81

               
               
               Conread position:1083-1290
               
               
               Cow position:chr25:1824093-1823881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr25:35109265-35109063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr25:36369823-36370039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):125, 62

               
               
               Conread position:1083-1296
               
               
               Cow position:chr25:36375514-36375730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):125, 62

               
               
               Conread position:1084-1261
               
               
               Cow position:chr25:23323495-23323678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1084-1279
               
               
               Cow position:chr25:1763092-1763283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1084-1295
               
               
               Cow position:chr25:18491043-18491253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):202, 87

               
               
               Conread position:1084-1295
               
               
               Cow position:chr25:33686680-33686466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 80

               
               
               Conread position:1085-1276
               
               
               Cow position:chr25:14225368-14225563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):84, 70

               
               
               Conread position:1085-1288
               
               
               Cow position:chr25:11060138-11060343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):88, 102

               
               
               Conread position:1085-1296
               
               
               Cow position:chr25:9025129-9025337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:1086-1278
               
               
               Cow position:chr25:35902754-35902944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1086-1282
               
               
               Cow position:chr25:33550516-33550714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 106

               
               
               Conread position:1086-1284
               
               
               Cow position:chr25:41150959-41150760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1086-1288
               
               
               Cow position:chr25:26523964-26524169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:1086-1296
               
               
               Cow position:chr25:3992793-3992995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1086-1296
               
               
               Cow position:chr25:8347659-8347868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):110, 92

               
               
               Conread position:1086-1296
               
               
               Cow position:chr25:21443362-21443149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):88, 80

               
               
               Conread position:1086-1296
               
               
               Cow position:chr25:22315212-22315419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1087-1283
               
               
               Cow position:chr25:24669436-24669249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1087-1288
               
               
               Cow position:chr25:15349897-15349702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1088-1283
               
               
               Cow position:chr25:20047518-20047714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:1088-1296
               
               
               Cow position:chr25:22565947-22565751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1089-1278
               
               
               Cow position:chr25:22734018-22734204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1089-1278
               
               
               Cow position:chr25:36746438-36746250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:1090-1272
               
               
               Cow position:chr25:7673311-7673499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1090-1281
               
               
               Cow position:chr25:7684887-7684699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 46

               
               
               Conread position:1091-1295
               
               
               Cow position:chr25:31926365-31926169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1092-1283
               
               
               Cow position:chr25:7590685-7590489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 74

               
               
               Conread position:1096-1288
               
               
               Cow position:chr25:11956821-11957012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1097-1296
               
               
               Cow position:chr25:13304580-13304376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1102-1288
               
               
               Cow position:chr25:18934612-18934429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1103-1278
               
               
               Cow position:chr25:4157222-4157049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1105-1268
               
               
               Cow position:chr25:10856688-10856528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1117-1275
               
               
               Cow position:chr25:14210021-14210171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1120-1296
               
               
               Cow position:chr25:21082366-21082191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:1125-1296
               
               
               Cow position:chr25:17141148-17141318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:1126-1293
               
               
               Cow position:chr25:2414844-2415009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1134-1296
               
               
               Cow position:chr25:7441064-7441224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1135-1276
               
               
               Cow position:chr25:13470658-13470515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:1053-1295
               
               
               Cow position:chr26:19636285-19636522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:1061-1288
               
               
               Cow position:chr26:34060334-34060562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:1067-1278
               
               
               Cow position:chr26:34724864-34724658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr26:12940407-12940628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):125, 187

               
               
               Conread position:1067-1283
               
               
               Cow position:chr26:30861741-30861526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:1067-1284
               
               
               Cow position:chr26:32517449-32517245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1067-1292
               
               
               Cow position:chr26:20825108-20824894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chr26:33241897-33242039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr26:27491490-27491296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):127, 47

               
               
               Conread position:1068-1264
               
               
               Cow position:chr26:13802121-13802311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr26:16783832-16784029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:1068-1276
               
               
               Cow position:chr26:11875213-11875010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr26:20769859-20770066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr26:22892437-22892232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr26:23924858-23925063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr26:31137456-31137245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:1068-1283
               
               
               Cow position:chr26:7314630-7314849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):125, 207

               
               
               Conread position:1068-1283
               
               
               Cow position:chr26:12145110-12144894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:1068-1284
               
               
               Cow position:chr26:16435648-16435428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):106, 117

               
               
               Conread position:1068-1285
               
               
               Cow position:chr26:20291684-20291470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr26:19591491-19591704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1289
               
               
               Cow position:chr26:28423295-28423513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1068-1294
               
               
               Cow position:chr26:8811135-8811366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 92

               
               
               Conread position:1068-1294
               
               
               Cow position:chr26:9535526-9535747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):211, 79

               
               
               Conread position:1068-1295
               
               
               Cow position:chr26:11964120-11964352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1295
               
               
               Cow position:chr26:33253308-33253083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr26:34611173-34610952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1069-1267
               
               
               Cow position:chr26:29889502-29889309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1069-1279
               
               
               Cow position:chr26:7148296-7148083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1069-1282
               
               
               Cow position:chr26:24240689-24240900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):123, 43

               
               
               Conread position:1069-1284
               
               
               Cow position:chr26:7687236-7687019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 117

               
               
               Conread position:1069-1284
               
               
               Cow position:chr26:25526258-25526469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1069-1289
               
               
               Cow position:chr26:28251162-28251383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:1069-1294
               
               
               Cow position:chr26:647715-647488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:1069-1296
               
               
               Cow position:chr26:5666057-5666275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):84, 110

               
               
               Conread position:1069-1296
               
               
               Cow position:chr26:23142095-23141867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 97

               
               
               Conread position:1069-1296
               
               
               Cow position:chr26:33202061-33201837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr26:19446144-19446354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:1071-1288
               
               
               Cow position:chr26:33038212-33038000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1072-1290
               
               
               Cow position:chr26:10700891-10700675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:1073-1296
               
               
               Cow position:chr26:8307515-8307296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):209, 171

               
               
               Conread position:1075-1278
               
               
               Cow position:chr26:4585195-4584995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1076-1278
               
               
               Cow position:chr26:15132653-15132857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):90, 99

               
               
               Conread position:1078-1287
               
               
               Cow position:chr26:1328838-1328642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1078-1295
               
               
               Cow position:chr26:26888115-26887902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:1079-1288
               
               
               Cow position:chr26:12028218-12028009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):96, 86

               
               
               Conread position:1079-1295
               
               
               Cow position:chr26:9596084-9595862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:1080-1273
               
               
               Cow position:chr26:6823179-6823371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 46

               
               
               Conread position:1080-1283
               
               
               Cow position:chr26:29901047-29900839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:1080-1287
               
               
               Cow position:chr26:18825263-18825058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 82

               
               
               Conread position:1080-1294
               
               
               Cow position:chr26:218438-218221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):94, 85

               
               
               Conread position:1080-1296
               
               
               Cow position:chr26:32029442-32029661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 62

               
               
               Conread position:1083-1277
               
               
               Cow position:chr26:34114285-34114480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 79

               
               
               Conread position:1083-1285
               
               
               Cow position:chr26:16585458-16585650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):136, 82

               
               
               Conread position:1083-1287
               
               
               Cow position:chr26:12893404-12893202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):191, 78

               
               
               Conread position:1083-1295
               
               
               Cow position:chr26:4854568-4854778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):205, 61

               
               
               Conread position:1083-1296
               
               
               Cow position:chr26:586856-586639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):72, 48

               
               
               Conread position:1084-1283
               
               
               Cow position:chr26:23481227-23481029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):191, 72

               
               
               Conread position:1084-1294
               
               
               Cow position:chr26:9099508-9099300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:1084-1296
               
               
               Cow position:chr26:16796182-16795981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1085-1283
               
               
               Cow position:chr26:7525178-7524985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):157, 30

               
               
               Conread position:1085-1288
               
               
               Cow position:chr26:6487766-6487564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):183, 94

               
               
               Conread position:1085-1292
               
               
               Cow position:chr26:13863009-13862809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1086-1288
               
               
               Cow position:chr26:9491951-9492146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):194, 29

               
               
               Conread position:1086-1296
               
               
               Cow position:chr26:27482537-27482326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:1087-1295
               
               
               Cow position:chr26:35553438-35553649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:1088-1278
               
               
               Cow position:chr26:8811500-8811691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:1088-1294
               
               
               Cow position:chr26:32566039-32566243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):201, 90

               
               
               Conread position:1090-1276
               
               
               Cow position:chr26:5836790-5836603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1090-1295
               
               
               Cow position:chr26:19459723-19459930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):154, 75

               
               
               Conread position:1092-1276
               
               
               Cow position:chr26:31888764-31888944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1092-1296
               
               
               Cow position:chr26:3930502-3930296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1096-1277
               
               
               Cow position:chr26:33112350-33112171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:1096-1282
               
               
               Cow position:chr26:13705741-13705548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 82

               
               
               Conread position:1102-1281
               
               
               Cow position:chr26:34560129-34559952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1102-1285
               
               
               Cow position:chr26:34026995-34026809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 73

               
               
               Conread position:1107-1288
               
               
               Cow position:chr26:10502776-10502952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:1108-1260
               
               
               Cow position:chr26:29897235-29897382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1108-1283
               
               
               Cow position:chr26:31712020-31711842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1112-1295
               
               
               Cow position:chr26:21319998-21320180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):166, 67

               
               
               Conread position:1117-1295
               
               
               Cow position:chr26:5168450-5168625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1133-1296
               
               
               Cow position:chr26:13292744-13292908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:1134-1282
               
               
               Cow position:chr26:13022536-13022683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1140-1283
               
               
               Cow position:chr26:5307196-5307339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 131

               
               
               Conread position:1-1023
               
               
               Cow position:chr27:2089195-2090213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:1056
               
               
               Alignm identity:827
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:1025-1281
               
               
               Cow position:chr27:23957524-23957271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:1051-1255
               
               
               Cow position:chr27:20067995-20068196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):158, 39

               
               
               Conread position:1052-1277
               
               
               Cow position:chr27:6319899-6319679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):213, 15

               
               
               Conread position:1058-1295
               
               
               Cow position:chr27:6282807-6282568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:1061-1296
               
               
               Cow position:chr27:20548783-20548547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:1063-1291
               
               
               Cow position:chr27:16965549-16965315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:1063-1293
               
               
               Cow position:chr27:3518475-3518241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 90

               
               
               Conread position:1067-1278
               
               
               Cow position:chr27:6241226-6241436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:1067-1279
               
               
               Cow position:chr27:28496405-28496615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:1067-1284
               
               
               Cow position:chr27:13940591-13940801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):209, 98

               
               
               Conread position:1067-1285
               
               
               Cow position:chr27:22547433-22547638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1067-1295
               
               
               Cow position:chr27:30914975-30914743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):131, 40

               
               
               Conread position:1067-1296
               
               
               Cow position:chr27:20629035-20628796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1067-1296
               
               
               Cow position:chr27:23560065-23560293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):201, 119

               
               
               Conread position:1068-1209
               
               
               Cow position:chr27:788833-788970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chr27:30489445-30489585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr27:19685748-19685937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr27:23107939-23108129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):143, 30

               
               
               Conread position:1068-1263
               
               
               Cow position:chr27:23890903-23890704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr27:16705216-16705019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr27:26865153-26865342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1068-1272
               
               
               Cow position:chr27:29593664-29593865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):135, 49

               
               
               Conread position:1068-1274
               
               
               Cow position:chr27:299416-299614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr27:11151634-11151427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:1068-1277
               
               
               Cow position:chr27:27055251-27055053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr27:6500026-6499814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1278
               
               
               Cow position:chr27:7412358-7412150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr27:15315482-15315278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1068-1280
               
               
               Cow position:chr27:23452426-23452217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr27:12564460-12564676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1281
               
               
               Cow position:chr27:14670417-14670627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):118, 110

               
               
               Conread position:1068-1281
               
               
               Cow position:chr27:18435168-18435377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr27:15454173-15453966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr27:15871126-15870909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr27:19681917-19681699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 102

               
               
               Conread position:1068-1283
               
               
               Cow position:chr27:22513712-22513931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):98, 121

               
               
               Conread position:1068-1285
               
               
               Cow position:chr27:4944549-4944756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr27:22171262-22171049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):210, 47

               
               
               Conread position:1068-1285
               
               
               Cow position:chr27:23507618-23507400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 206

               
               
               Conread position:1068-1288
               
               
               Cow position:chr27:7343463-7343680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 104

               
               
               Conread position:1068-1288
               
               
               Cow position:chr27:16103772-16103558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):140, 44

               
               
               Conread position:1068-1288
               
               
               Cow position:chr27:19387983-19387768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):150, 44

               
               
               Conread position:1068-1288
               
               
               Cow position:chr27:23485174-23484963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr27:15003013-15003237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr27:23594286-23594060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):145, 58

               
               
               Conread position:1068-1292
               
               
               Cow position:chr27:6106665-6106447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):206, 44

               
               
               Conread position:1068-1293
               
               
               Cow position:chr27:19508978-19508752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:1068-1294
               
               
               Cow position:chr27:31169145-31169365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr27:10979828-10979596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr27:15409071-15409285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr27:20719253-20719020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr27:22035412-22035630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr27:29319376-29319143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 116

               
               
               Conread position:1069-1260
               
               
               Cow position:chr27:26238989-26238798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):121, 96

               
               
               Conread position:1069-1266
               
               
               Cow position:chr27:26323412-26323210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:1069-1280
               
               
               Cow position:chr27:10307336-10307549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 43

               
               
               Conread position:1069-1282
               
               
               Cow position:chr27:16786793-16786583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):139, 86

               
               
               Conread position:1069-1284
               
               
               Cow position:chr27:426934-426720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:1069-1285
               
               
               Cow position:chr27:26793819-26794035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 90

               
               
               Conread position:1069-1285
               
               
               Cow position:chr27:28478544-28478331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):190, 109

               
               
               Conread position:1069-1287
               
               
               Cow position:chr27:20897061-20897273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr27:22220518-22220294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr27:26226326-26226540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr27:31210511-31210296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1069-1294
               
               
               Cow position:chr27:23918070-23918293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:1070-1261
               
               
               Cow position:chr27:26504265-26504077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1277
               
               
               Cow position:chr27:26999459-26999666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):132, 106

               
               
               Conread position:1070-1278
               
               
               Cow position:chr27:10404153-10404361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:1070-1284
               
               
               Cow position:chr27:12425253-12425036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:1070-1287
               
               
               Cow position:chr27:24223915-24223700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:1070-1289
               
               
               Cow position:chr27:29164733-29164518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):205, 46

               
               
               Conread position:1070-1291
               
               
               Cow position:chr27:30890254-30890044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:1070-1294
               
               
               Cow position:chr27:15668808-15669034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1070-1296
               
               
               Cow position:chr27:11323293-11323067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 96

               
               
               Conread position:1070-1296
               
               
               Cow position:chr27:11480673-11480900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):136, 94

               
               
               Conread position:1070-1296
               
               
               Cow position:chr27:21669154-21669377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):161, 95

               
               
               Conread position:1070-1296
               
               
               Cow position:chr27:27740328-27740554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 99

               
               
               Conread position:1071-1281
               
               
               Cow position:chr27:24951994-24952199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:1073-1283
               
               
               Cow position:chr27:24440262-24440466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1073-1291
               
               
               Cow position:chr27:19576363-19576580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):186, 105

               
               
               Conread position:1073-1295
               
               
               Cow position:chr27:27632641-27632854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1073-1296
               
               
               Cow position:chr27:29615002-29614779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 88

               
               
               Conread position:1074-1296
               
               
               Cow position:chr27:26400762-26400981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):202, 108

               
               
               Conread position:1075-1275
               
               
               Cow position:chr27:12459242-12459047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):144, 24

               
               
               Conread position:1075-1288
               
               
               Cow position:chr27:26617364-26617161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1075-1295
               
               
               Cow position:chr27:26433849-26434074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1075-1296
               
               
               Cow position:chr27:20828752-20828964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1076-1273
               
               
               Cow position:chr27:7425231-7425427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1076-1288
               
               
               Cow position:chr27:31231124-31231331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1079-1288
               
               
               Cow position:chr27:11134040-11133834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr27:590809-591016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 197

               
               
               Conread position:1080-1288
               
               
               Cow position:chr27:4398538-4398739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):110, 128

               
               
               Conread position:1080-1288
               
               
               Cow position:chr27:13204412-13204211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1080-1296
               
               
               Cow position:chr27:17397501-17397711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1081-1296
               
               
               Cow position:chr27:11707880-11708096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):195, 85

               
               
               Conread position:1082-1285
               
               
               Cow position:chr27:15926747-15926545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:1082-1289
               
               
               Cow position:chr27:15237764-15237555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1082-1295
               
               
               Cow position:chr27:12187170-12187384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:1083-1268
               
               
               Cow position:chr27:1184227-1184407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 102

               
               
               Conread position:1083-1278
               
               
               Cow position:chr27:8629921-8630118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:1083-1283
               
               
               Cow position:chr27:11435372-11435576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr27:9977633-9977432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):141, 88

               
               
               Conread position:1083-1289
               
               
               Cow position:chr27:12284944-12284739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):144, 29

               
               
               Conread position:1083-1294
               
               
               Cow position:chr27:11982696-11982907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:1083-1295
               
               
               Cow position:chr27:28921942-28922156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 41

               
               
               Conread position:1083-1296
               
               
               Cow position:chr27:18791559-18791776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:1084-1273
               
               
               Cow position:chr27:17102845-17102661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1084-1278
               
               
               Cow position:chr27:29493951-29494142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1084-1288
               
               
               Cow position:chr27:26437172-26437376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):192, 71

               
               
               Conread position:1085-1265
               
               
               Cow position:chr27:15859349-15859528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:1085-1288
               
               
               Cow position:chr27:29597802-29597998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1085-1296
               
               
               Cow position:chr27:2949379-2949576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1086-1288
               
               
               Cow position:chr27:10581476-10581281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1087-1282
               
               
               Cow position:chr27:24358279-24358093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1089-1278
               
               
               Cow position:chr27:20048578-20048393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1089-1281
               
               
               Cow position:chr27:27528876-27529062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 100

               
               
               Conread position:1090-1274
               
               
               Cow position:chr27:1067511-1067336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1093-1296
               
               
               Cow position:chr27:15867329-15867129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:1093-1296
               
               
               Cow position:chr27:18988163-18987955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:1097-1273
               
               
               Cow position:chr27:21951042-21951219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1099-1283
               
               
               Cow position:chr27:21202127-21201940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 68

               
               
               Conread position:1101-1284
               
               
               Cow position:chr27:27606364-27606544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1102-1296
               
               
               Cow position:chr27:23477877-23477684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):161, 63

               
               
               Conread position:1103-1276
               
               
               Cow position:chr27:9253183-9253354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1106-1281
               
               
               Cow position:chr27:11145806-11145635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1106-1295
               
               
               Cow position:chr27:31183503-31183311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 161

               
               
               Conread position:1107-1278
               
               
               Cow position:chr27:26087242-26087076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1109-1277
               
               
               Cow position:chr27:178787-178620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1117-1287
               
               
               Cow position:chr27:21661052-21660884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 57

               
               
               Conread position:1117-1288
               
               
               Cow position:chr27:1292663-1292487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:1117-1295
               
               
               Cow position:chr27:22748244-22748068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1123-1284
               
               
               Cow position:chr27:28062288-28062444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1133-1275
               
               
               Cow position:chr27:22150794-22150934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1051-1278
               
               
               Cow position:chr28:7008999-7008776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 113

               
               
               Conread position:1067-1257
               
               
               Cow position:chr28:22346016-22346206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):119, 180

               
               
               Conread position:1067-1277
               
               
               Cow position:chr28:29850820-29850618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):174, 121

               
               
               Conread position:1067-1282
               
               
               Cow position:chr28:5204190-5204393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1285
               
               
               Cow position:chr28:24966382-24966597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:1067-1288
               
               
               Cow position:chr28:7132092-7131877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:1067-1288
               
               
               Cow position:chr28:7350649-7350864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1295
               
               
               Cow position:chr28:11866670-11866444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):209, 98

               
               
               Conread position:1067-1296
               
               
               Cow position:chr28:4834849-4834620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):107, 82

               
               
               Conread position:1067-1296
               
               
               Cow position:chr28:10053334-10053107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:1067-1296
               
               
               Cow position:chr28:14151216-14151451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1067-1296
               
               
               Cow position:chr28:15362574-15362802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):107, 98

               
               
               Conread position:1068-1198
               
               
               Cow position:chr28:16246068-16245941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chr28:2131928-2131788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:1068-1262
               
               
               Cow position:chr28:12430602-12430796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):124, 50

               
               
               Conread position:1068-1265
               
               
               Cow position:chr28:3914712-3914897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:1068-1265
               
               
               Cow position:chr28:16346535-16346346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr28:16879569-16879760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr28:26531281-26531089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):135, 102

               
               
               Conread position:1068-1266
               
               
               Cow position:chr28:4045845-4046037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):150, 5

               
               
               Conread position:1068-1274
               
               
               Cow position:chr28:6975237-6975435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr28:3023917-3023714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):170, 96

               
               
               Conread position:1068-1275
               
               
               Cow position:chr28:9285374-9285175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):151, 44

               
               
               Conread position:1068-1277
               
               
               Cow position:chr28:5138995-5138795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr28:8396331-8396529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr28:9636461-9636253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):175, 110

               
               
               Conread position:1068-1278
               
               
               Cow position:chr28:777671-777881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 112

               
               
               Conread position:1068-1278
               
               
               Cow position:chr28:3410991-3410784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:1068-1278
               
               
               Cow position:chr28:16370087-16369883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):200, 118

               
               
               Conread position:1068-1279
               
               
               Cow position:chr28:30902122-30902327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1280
               
               
               Cow position:chr28:19361732-19361947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr28:3492787-3492579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr28:4823600-4823809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr28:19564232-19564026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr28:25056962-25057165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr28:4013080-4013293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr28:4090058-4089849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:1068-1283
               
               
               Cow position:chr28:4440292-4440510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr28:8787537-8787749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr28:26944162-26943941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:1068-1283
               
               
               Cow position:chr28:30937671-30937473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr28:3740872-3741080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):103, 111

               
               
               Conread position:1068-1285
               
               
               Cow position:chr28:4016527-4016734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr28:7619154-7618949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr28:11426545-11426337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1286
               
               
               Cow position:chr28:11884525-11884318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr28:4158951-4159178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 210

               
               
               Conread position:1068-1288
               
               
               Cow position:chr28:5144525-5144297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):140, 111

               
               
               Conread position:1068-1288
               
               
               Cow position:chr28:8304243-8304458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:1068-1288
               
               
               Cow position:chr28:17739821-17740038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:1068-1289
               
               
               Cow position:chr28:25128883-25129100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr28:4809775-4809987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr28:11585206-11584991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr28:16204338-16204107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr28:5630094-5630323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):104, 80

               
               
               Conread position:1068-1296
               
               
               Cow position:chr28:9705649-9705881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):132, 47

               
               
               Conread position:1068-1296
               
               
               Cow position:chr28:11527262-11527037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):144, 56

               
               
               Conread position:1068-1296
               
               
               Cow position:chr28:17949117-17948895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr28:20124780-20125004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):46, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr28:29416720-29416502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1069-1257
               
               
               Cow position:chr28:10745210-10745399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:1069-1258
               
               
               Cow position:chr28:16211104-16210916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1069-1279
               
               
               Cow position:chr28:8347728-8347940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr28:4006783-4006995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr28:4070964-4071173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 80

               
               
               Conread position:1069-1288
               
               
               Cow position:chr28:5254870-5255085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):7, 111

               
               
               Conread position:1069-1290
               
               
               Cow position:chr28:5684700-5684916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1069-1291
               
               
               Cow position:chr28:23296319-23296537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1069-1293
               
               
               Cow position:chr28:5437088-5436865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):106, 71

               
               
               Conread position:1069-1294
               
               
               Cow position:chr28:5673872-5674094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):207, 96

               
               
               Conread position:1069-1296
               
               
               Cow position:chr28:22332525-22332752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):105, 181

               
               
               Conread position:1070-1277
               
               
               Cow position:chr28:21868455-21868661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr28:4364824-4364618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):192, 45

               
               
               Conread position:1070-1282
               
               
               Cow position:chr28:8140480-8140692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):135, 177

               
               
               Conread position:1070-1283
               
               
               Cow position:chr28:4181999-4182211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr28:3445483-3445263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:1070-1290
               
               
               Cow position:chr28:11346489-11346272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 101

               
               
               Conread position:1070-1295
               
               
               Cow position:chr28:16919170-16918953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1071-1295
               
               
               Cow position:chr28:11079301-11079525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 46

               
               
               Conread position:1074-1267
               
               
               Cow position:chr28:14998069-14998258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1074-1289
               
               
               Cow position:chr28:28501235-28501458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):101, 38

               
               
               Conread position:1075-1277
               
               
               Cow position:chr28:7557731-7557523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):126, 111

               
               
               Conread position:1075-1281
               
               
               Cow position:chr28:4101523-4101720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 102

               
               
               Conread position:1075-1285
               
               
               Cow position:chr28:8936153-8936360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:1075-1289
               
               
               Cow position:chr28:4643767-4643554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):89, 97

               
               
               Conread position:1075-1296
               
               
               Cow position:chr28:4876446-4876660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1077-1287
               
               
               Cow position:chr28:9109221-9109425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1078-1288
               
               
               Cow position:chr28:4884250-4884038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 111

               
               
               Conread position:1079-1274
               
               
               Cow position:chr28:10890728-10890541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1080-1277
               
               
               Cow position:chr28:33884410-33884607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):145, 70

               
               
               Conread position:1080-1278
               
               
               Cow position:chr28:20759693-20759488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:1080-1282
               
               
               Cow position:chr28:16362526-16362332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):128, 87

               
               
               Conread position:1080-1283
               
               
               Cow position:chr28:5577533-5577741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:1080-1283
               
               
               Cow position:chr28:12973889-12974095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):123, 85

               
               
               Conread position:1080-1296
               
               
               Cow position:chr28:5403034-5402815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:1082-1283
               
               
               Cow position:chr28:7132372-7132168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:1082-1283
               
               
               Cow position:chr28:12662387-12662179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:1083-1273
               
               
               Cow position:chr28:20968569-20968376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:1083-1278
               
               
               Cow position:chr28:5235892-5236079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1083-1282
               
               
               Cow position:chr28:8259639-8259841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr28:10615935-10615740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr28:19039008-19038800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 95

               
               
               Conread position:1083-1294
               
               
               Cow position:chr28:6563887-6563671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1083-1295
               
               
               Cow position:chr28:4022684-4022895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):109, 160

               
               
               Conread position:1083-1295
               
               
               Cow position:chr28:19994935-19994724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:1083-1296
               
               
               Cow position:chr28:32014795-32015013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):115, 95

               
               
               Conread position:1084-1276
               
               
               Cow position:chr28:4185918-4186106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1084-1283
               
               
               Cow position:chr28:9740478-9740670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 93

               
               
               Conread position:1084-1288
               
               
               Cow position:chr28:10203131-10203326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1085-1273
               
               
               Cow position:chr28:13474313-13474499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):145, 93

               
               
               Conread position:1085-1278
               
               
               Cow position:chr28:17680635-17680830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:1085-1288
               
               
               Cow position:chr28:31841332-31841131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):201, 39

               
               
               Conread position:1085-1295
               
               
               Cow position:chr28:21844970-21845172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1086-1273
               
               
               Cow position:chr28:24082284-24082470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1086-1296
               
               
               Cow position:chr28:7964663-7964456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1087-1288
               
               
               Cow position:chr28:11059515-11059706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1087-1288
               
               
               Cow position:chr28:11828944-11828744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:1088-1286
               
               
               Cow position:chr28:2777546-2777744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):186, 106

               
               
               Conread position:1088-1296
               
               
               Cow position:chr28:26264843-26265054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 79

               
               
               Conread position:1090-1284
               
               
               Cow position:chr28:12991160-12991348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):177, 88

               
               
               Conread position:1090-1288
               
               
               Cow position:chr28:10196847-10196655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 64

               
               
               Conread position:1091-1276
               
               
               Cow position:chr28:3746221-3746400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1092-1282
               
               
               Cow position:chr28:2151420-2151232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 150

               
               
               Conread position:1093-1283
               
               
               Cow position:chr28:5609896-5609707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:1096-1288
               
               
               Cow position:chr28:3678386-3678574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1096-1295
               
               
               Cow position:chr28:22085518-22085323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:1096-1296
               
               
               Cow position:chr28:2892276-2892481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:1096-1296
               
               
               Cow position:chr28:26826243-26826444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 66

               
               
               Conread position:1099-1261
               
               
               Cow position:chr28:5711982-5711823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1099-1288
               
               
               Cow position:chr28:10863765-10863585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1100-1278
               
               
               Cow position:chr28:11422785-11422614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1101-1296
               
               
               Cow position:chr28:17943759-17943946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1103-1294
               
               
               Cow position:chr28:26868120-26867931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):178, 85

               
               
               Conread position:1106-1285
               
               
               Cow position:chr28:29989076-29988897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):103, 77

               
               
               Conread position:1107-1288
               
               
               Cow position:chr28:4282456-4282274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 57

               
               
               Conread position:1107-1295
               
               
               Cow position:chr28:11305598-11305415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1107-1296
               
               
               Cow position:chr28:7697947-7697754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1117-1289
               
               
               Cow position:chr28:3759035-3759214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1117-1296
               
               
               Cow position:chr28:4866528-4866354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):160, 62

               
               
               Conread position:1117-1296
               
               
               Cow position:chr28:6301126-6301309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1118-1288
               
               
               Cow position:chr28:16200697-16200524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1120-1295
               
               
               Cow position:chr28:27787614-27787784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1122-1296
               
               
               Cow position:chr28:24238427-24238262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1124-1278
               
               
               Cow position:chr28:4588370-4588519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1124-1289
               
               
               Cow position:chr28:21263209-21263370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1133-1285
               
               
               Cow position:chr28:3257049-3257202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1056-1284
               
               
               Cow position:chr29:2744290-2744063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):140, 112

               
               
               Conread position:1057-1296
               
               
               Cow position:chr29:36781327-36781093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 133

               
               
               Conread position:1058-1280
               
               
               Cow position:chr29:35677565-35677339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:1061-1283
               
               
               Cow position:chr29:23844819-23845045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:1061-1294
               
               
               Cow position:chr29:4520322-4520546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):135, 41

               
               
               Conread position:1062-1277
               
               
               Cow position:chr29:36697740-36697955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):112, 184

               
               
               Conread position:1063-1277
               
               
               Cow position:chr29:5953873-5953658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):133, 19

               
               
               Conread position:1064-1288
               
               
               Cow position:chr29:22729553-22729774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1067-1209
               
               
               Cow position:chr29:38978520-38978661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 77

               
               
               Conread position:1067-1278
               
               
               Cow position:chr29:22735117-22734907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):144, 48

               
               
               Conread position:1068-1260
               
               
               Cow position:chr29:22723590-22723777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr29:23825221-23825026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr29:29324431-29324234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):149, 47

               
               
               Conread position:1068-1265
               
               
               Cow position:chr29:32197686-32197880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr29:17804525-17804717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1068-1266
               
               
               Cow position:chr29:39111322-39111137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr29:44139254-44139056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr29:5892834-5893040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 178

               
               
               Conread position:1068-1277
               
               
               Cow position:chr29:23155217-23155433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:1068-1278
               
               
               Cow position:chr29:36952307-36952113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1068-1280
               
               
               Cow position:chr29:36357118-36357328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):142, 43

               
               
               Conread position:1068-1281
               
               
               Cow position:chr29:17297125-17297340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 97

               
               
               Conread position:1068-1283
               
               
               Cow position:chr29:465410-465189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):106, 96

               
               
               Conread position:1068-1283
               
               
               Cow position:chr29:7624168-7624369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr29:25737425-25737215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr29:25874482-25874264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr29:29588937-29588720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):121, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr29:30827395-30827613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):113, 102

               
               
               Conread position:1068-1284
               
               
               Cow position:chr29:36530856-36531071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):126, 103

               
               
               Conread position:1068-1285
               
               
               Cow position:chr29:9378626-9378840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr29:35501665-35501460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr29:12680145-12680364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 204

               
               
               Conread position:1068-1287
               
               
               Cow position:chr29:40117561-40117773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr29:1007811-1008030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):194, 15

               
               
               Conread position:1068-1288
               
               
               Cow position:chr29:16200489-16200265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr29:20770336-20770551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):153, 44

               
               
               Conread position:1068-1288
               
               
               Cow position:chr29:28420745-28420967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 43

               
               
               Conread position:1068-1288
               
               
               Cow position:chr29:29308583-29308373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 111

               
               
               Conread position:1068-1288
               
               
               Cow position:chr29:31651400-31651611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 107

               
               
               Conread position:1068-1288
               
               
               Cow position:chr29:31928978-31929195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr29:16290715-16290938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):208, 97

               
               
               Conread position:1068-1295
               
               
               Cow position:chr29:22162260-22162049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr29:34773748-34773532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 119

               
               
               Conread position:1068-1295
               
               
               Cow position:chr29:39038280-39038051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr29:4480181-4479953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:1068-1296
               
               
               Cow position:chr29:5063134-5063361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):215, 111

               
               
               Conread position:1068-1296
               
               
               Cow position:chr29:9310590-9310820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:1068-1296
               
               
               Cow position:chr29:19363700-19363925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr29:25814847-25814613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):113, 49

               
               
               Conread position:1068-1296
               
               
               Cow position:chr29:33511740-33511510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1296
               
               
               Cow position:chr29:34358989-34358757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):134, 118

               
               
               Conread position:1068-1296
               
               
               Cow position:chr29:41530839-41531070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1069-1277
               
               
               Cow position:chr29:17109950-17110151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr29:16278978-16279181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr29:36249026-36249243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:1069-1285
               
               
               Cow position:chr29:18450146-18449933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):107, 13

               
               
               Conread position:1069-1288
               
               
               Cow position:chr29:4070618-4070830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):200, 37

               
               
               Conread position:1069-1289
               
               
               Cow position:chr29:732611-732818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1070-1252
               
               
               Cow position:chr29:1556922-1557100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr29:26540549-26540341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1070-1279
               
               
               Cow position:chr29:24292859-24293070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:1070-1284
               
               
               Cow position:chr29:21666078-21666291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):117, 108

               
               
               Conread position:1070-1285
               
               
               Cow position:chr29:38980083-38979875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:1070-1288
               
               
               Cow position:chr29:29923582-29923367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1072-1293
               
               
               Cow position:chr29:19762264-19762476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1073-1277
               
               
               Cow position:chr29:19125316-19125528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:1074-1275
               
               
               Cow position:chr29:7290771-7290966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):192, 104

               
               
               Conread position:1075-1277
               
               
               Cow position:chr29:5409145-5408944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1075-1277
               
               
               Cow position:chr29:15797948-15798149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 170

               
               
               Conread position:1075-1296
               
               
               Cow position:chr29:936206-936420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1078-1285
               
               
               Cow position:chr29:43088310-43088511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr29:12890686-12890881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):199, 32

               
               
               Conread position:1080-1283
               
               
               Cow position:chr29:13558334-13558542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1080-1285
               
               
               Cow position:chr29:22028951-22028756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1080-1296
               
               
               Cow position:chr29:19949311-19949522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chr29:4492439-4492637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):194, 84

               
               
               Conread position:1082-1283
               
               
               Cow position:chr29:5568493-5568697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1082-1295
               
               
               Cow position:chr29:27524832-27524616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 180

               
               
               Conread position:1082-1296
               
               
               Cow position:chr29:5831017-5830798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1296
               
               
               Cow position:chr29:21018743-21018524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 84

               
               
               Conread position:1083-1267
               
               
               Cow position:chr29:4423435-4423262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr29:14576863-14577066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:1083-1288
               
               
               Cow position:chr29:17222417-17222625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):91, 148

               
               
               Conread position:1083-1290
               
               
               Cow position:chr29:25092114-25092316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):193, 29

               
               
               Conread position:1084-1278
               
               
               Cow position:chr29:18878476-18878283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 78

               
               
               Conread position:1085-1282
               
               
               Cow position:chr29:10058529-10058340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):103, 36

               
               
               Conread position:1085-1282
               
               
               Cow position:chr29:32215713-32215906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:1085-1283
               
               
               Cow position:chr29:1614935-1615132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):183, 94

               
               
               Conread position:1085-1288
               
               
               Cow position:chr29:9709701-9709901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1085-1295
               
               
               Cow position:chr29:30548782-30548992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):114, 103

               
               
               Conread position:1085-1296
               
               
               Cow position:chr29:22613436-22613636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1086-1273
               
               
               Cow position:chr29:7444054-7443873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1086-1278
               
               
               Cow position:chr29:31943873-31944065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:1086-1296
               
               
               Cow position:chr29:25288916-25288701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 53

               
               
               Conread position:1088-1283
               
               
               Cow position:chr29:8163820-8163623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):84, 77

               
               
               Conread position:1089-1280
               
               
               Cow position:chr29:4441195-4441004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:1089-1296
               
               
               Cow position:chr29:23874470-23874681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:1093-1296
               
               
               Cow position:chr29:14746794-14746998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):183, 72

               
               
               Conread position:1096-1274
               
               
               Cow position:chr29:3292965-3293138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1096-1275
               
               
               Cow position:chr29:40763677-40763500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 57

               
               
               Conread position:1096-1288
               
               
               Cow position:chr29:22577162-22576967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1096-1288
               
               
               Cow position:chr29:41112864-41112683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1099-1288
               
               
               Cow position:chr29:28813954-28813763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):76, 65

               
               
               Conread position:1099-1296
               
               
               Cow position:chr29:42630141-42630336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):177, 66

               
               
               Conread position:1100-1284
               
               
               Cow position:chr29:17282089-17282268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):174, 60

               
               
               Conread position:1102-1296
               
               
               Cow position:chr29:16735247-16735443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 62

               
               
               Conread position:1107-1262
               
               
               Cow position:chr29:41223194-41223347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 5

               
               
               Conread position:1117-1283
               
               
               Cow position:chr29:24660723-24660881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1117-1290
               
               
               Cow position:chr29:33143316-33143149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1122-1283
               
               
               Cow position:chr29:36546739-36546578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:1122-1296
               
               
               Cow position:chr29:40112425-40112597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):153, 60

               
               
               Conread position:1123-1288
               
               
               Cow position:chr29:22776123-22776287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):155, 65

               
               
               Conread position:1134-1288
               
               
               Cow position:chr29:10838996-10839147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1143-1285
               
               
               Cow position:chr29:38010509-38010650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1051-1285
               
               
               Cow position:chr3:13301901-13301665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:1055-1288
               
               
               Cow position:chr3:36375582-36375350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):144, 36

               
               
               Conread position:1060-1282
               
               
               Cow position:chr3:5707255-5707029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:1062-1277
               
               
               Cow position:chr3:75107735-75107947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1063-1283
               
               
               Cow position:chr3:18248913-18249137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):6, 108

               
               
               Conread position:1063-1294
               
               
               Cow position:chr3:24596461-24596231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 101

               
               
               Conread position:1064-1273
               
               
               Cow position:chr3:4518219-4518013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:1066-1283
               
               
               Cow position:chr3:5703143-5703357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):126, 83

               
               
               Conread position:1067-1235
               
               
               Cow position:chr3:19626540-19626374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 93

               
               
               Conread position:1067-1237
               
               
               Cow position:chr3:70565772-70565599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):142, 121

               
               
               Conread position:1067-1261
               
               
               Cow position:chr3:18607636-18607822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:1067-1266
               
               
               Cow position:chr3:9116993-9117198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):106, 41

               
               
               Conread position:1067-1273
               
               
               Cow position:chr3:14546968-14547170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1067-1278
               
               
               Cow position:chr3:49344659-49344868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):107, 186

               
               
               Conread position:1067-1283
               
               
               Cow position:chr3:11229399-11229189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):201, 111

               
               
               Conread position:1067-1283
               
               
               Cow position:chr3:32317866-32317647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):14, 100

               
               
               Conread position:1067-1283
               
               
               Cow position:chr3:80733887-80733668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 121

               
               
               Conread position:1067-1291
               
               
               Cow position:chr3:48363042-48363257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1067-1296
               
               
               Cow position:chr3:64196792-64197022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):209, 128

               
               
               Conread position:1067-1296
               
               
               Cow position:chr3:78092545-78092318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):150, 94

               
               
               Conread position:1068-1210
               
               
               Cow position:chr3:55984066-55984203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1068-1214
               
               
               Cow position:chr3:20677872-20677729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):139, 47

               
               
               Conread position:1068-1256
               
               
               Cow position:chr3:52608149-52608335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr3:53084021-53083824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):62, 135

               
               
               Conread position:1068-1261
               
               
               Cow position:chr3:74079669-74079479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr3:10668912-10668713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 47

               
               
               Conread position:1068-1268
               
               
               Cow position:chr3:26603588-26603380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr3:10958273-10958071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr3:7331156-7330963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:1068-1277
               
               
               Cow position:chr3:32585117-32585328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):153, 110

               
               
               Conread position:1068-1277
               
               
               Cow position:chr3:60264749-60264547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr3:61224777-61224574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr3:68303283-68303493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:1068-1277
               
               
               Cow position:chr3:70609599-70609800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr3:70762153-70761948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr3:7661823-7662034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 44

               
               
               Conread position:1068-1278
               
               
               Cow position:chr3:8591405-8591192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 121

               
               
               Conread position:1068-1279
               
               
               Cow position:chr3:15950946-15950740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):175, 110

               
               
               Conread position:1068-1279
               
               
               Cow position:chr3:19585831-19586041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr3:76268008-76267794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):146, 111

               
               
               Conread position:1068-1281
               
               
               Cow position:chr3:78077152-78077369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:1068-1282
               
               
               Cow position:chr3:45881866-45882079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr3:59474089-59474300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 147

               
               
               Conread position:1068-1282
               
               
               Cow position:chr3:59945091-59945307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:5305765-5305984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):127, 184

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:8349597-8349391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:14770915-14770704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:15954118-15953900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:26992537-26992755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):108, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:31350137-31349928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:32310449-32310231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:44959909-44960127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):99, 113

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:48468140-48468358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 129

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:49327911-49328113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):188, 127

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:60933384-60933599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr3:64280964-64280756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:1068-1284
               
               
               Cow position:chr3:57274027-57274241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:1068-1284
               
               
               Cow position:chr3:71474437-71474225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr3:3316848-3316625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 58

               
               
               Conread position:1068-1285
               
               
               Cow position:chr3:6182254-6182051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):141, 38

               
               
               Conread position:1068-1285
               
               
               Cow position:chr3:44961037-44960835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr3:82019872-82019660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr3:46792352-46792571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):206, 97

               
               
               Conread position:1068-1288
               
               
               Cow position:chr3:68004735-68004524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr3:68156689-68156916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):63, 182

               
               
               Conread position:1068-1288
               
               
               Cow position:chr3:69785658-69785434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:1068-1288
               
               
               Cow position:chr3:75080730-75080938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr3:75479970-75480185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):201, 47

               
               
               Conread position:1068-1289
               
               
               Cow position:chr3:9641534-9641742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:1068-1289
               
               
               Cow position:chr3:13353331-13353551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:1068-1289
               
               
               Cow position:chr3:68708041-68707835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr3:15051981-15051760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:1068-1291
               
               
               Cow position:chr3:23408389-23408176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr3:48072915-48072698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1292
               
               
               Cow position:chr3:48810678-48810446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1068-1292
               
               
               Cow position:chr3:73467598-73467815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 146

               
               
               Conread position:1068-1294
               
               
               Cow position:chr3:22165448-22165220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):212, 49

               
               
               Conread position:1068-1294
               
               
               Cow position:chr3:55177779-55177560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr3:3556512-3556742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):99, 129

               
               
               Conread position:1068-1295
               
               
               Cow position:chr3:50768646-50768873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):207, 120

               
               
               Conread position:1068-1295
               
               
               Cow position:chr3:59299541-59299764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):62, 113

               
               
               Conread position:1068-1295
               
               
               Cow position:chr3:71497171-71496935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 112

               
               
               Conread position:1068-1296
               
               
               Cow position:chr3:210286-210519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 112

               
               
               Conread position:1068-1296
               
               
               Cow position:chr3:12705576-12705355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr3:22232683-22232474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr3:22668377-22668607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr3:22924408-22924186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr3:27274498-27274719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr3:35624578-35624348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 54

               
               
               Conread position:1068-1296
               
               
               Cow position:chr3:59604813-59605034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr3:79824953-79824722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:1069-1210
               
               
               Cow position:chr3:56059779-56059918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1238
               
               
               Cow position:chr3:32409180-32409356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1069-1269
               
               
               Cow position:chr3:80564934-80565129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1276
               
               
               Cow position:chr3:15160488-15160691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1069-1276
               
               
               Cow position:chr3:15973534-15973744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 95

               
               
               Conread position:1069-1277
               
               
               Cow position:chr3:53221980-53222187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:1069-1277
               
               
               Cow position:chr3:59610750-59610544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):125, 106

               
               
               Conread position:1069-1278
               
               
               Cow position:chr3:14552843-14553048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1278
               
               
               Cow position:chr3:15443760-15443550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:1069-1279
               
               
               Cow position:chr3:23132201-23131991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1069-1279
               
               
               Cow position:chr3:31309386-31309177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 184

               
               
               Conread position:1069-1280
               
               
               Cow position:chr3:79196727-79196941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr3:57754509-57754294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:1069-1284
               
               
               Cow position:chr3:8061097-8061303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):200, 43

               
               
               Conread position:1069-1288
               
               
               Cow position:chr3:23169095-23168882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):144, 17

               
               
               Conread position:1069-1288
               
               
               Cow position:chr3:54946099-54946308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):200, 109

               
               
               Conread position:1069-1288
               
               
               Cow position:chr3:76269860-76270074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr3:5040339-5040111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):126, 43

               
               
               Conread position:1069-1296
               
               
               Cow position:chr3:25690760-25690995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr3:51609216-51608988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:1070-1257
               
               
               Cow position:chr3:35238982-35239166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):148, 87

               
               
               Conread position:1070-1273
               
               
               Cow position:chr3:26970782-26970982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:1070-1275
               
               
               Cow position:chr3:49363078-49363280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1070-1275
               
               
               Cow position:chr3:78093420-78093220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1070-1277
               
               
               Cow position:chr3:9120814-9121017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 42

               
               
               Conread position:1070-1277
               
               
               Cow position:chr3:17936870-17936672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1279
               
               
               Cow position:chr3:55189785-55189573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 120

               
               
               Conread position:1070-1280
               
               
               Cow position:chr3:38864094-38864297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 119

               
               
               Conread position:1070-1283
               
               
               Cow position:chr3:3883846-3883638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):199, 83

               
               
               Conread position:1070-1288
               
               
               Cow position:chr3:16752289-16752068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):132, 47

               
               
               Conread position:1070-1288
               
               
               Cow position:chr3:73421524-73421299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):175, 218

               
               
               Conread position:1070-1296
               
               
               Cow position:chr3:2674998-2675226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):122, 200

               
               
               Conread position:1070-1296
               
               
               Cow position:chr3:18426738-18426504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 124

               
               
               Conread position:1070-1296
               
               
               Cow position:chr3:47753195-47753431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1070-1296
               
               
               Cow position:chr3:53428948-53428723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):206, 109

               
               
               Conread position:1071-1278
               
               
               Cow position:chr3:1036992-1037204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):145, 115

               
               
               Conread position:1071-1295
               
               
               Cow position:chr3:54050061-54049833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):110, 99

               
               
               Conread position:1072-1293
               
               
               Cow position:chr3:67407395-67407177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1073-1281
               
               
               Cow position:chr3:44932488-44932692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):196, 68

               
               
               Conread position:1073-1282
               
               
               Cow position:chr3:3947010-3947215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):134, 113

               
               
               Conread position:1075-1288
               
               
               Cow position:chr3:45700780-45700988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 83

               
               
               Conread position:1077-1278
               
               
               Cow position:chr3:53790560-53790366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:1078-1292
               
               
               Cow position:chr3:32436617-32436827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:1079-1282
               
               
               Cow position:chr3:59681926-59681727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1079-1283
               
               
               Cow position:chr3:83455173-83454976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1079-1285
               
               
               Cow position:chr3:18686884-18687084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1080-1267
               
               
               Cow position:chr3:19788851-19788664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):170, 97

               
               
               Conread position:1080-1279
               
               
               Cow position:chr3:18393415-18393223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:1080-1281
               
               
               Cow position:chr3:73589792-73589587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr3:27246980-27246786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr3:36418501-36418307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr3:65969146-65969355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1080-1285
               
               
               Cow position:chr3:31115291-31115095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1080-1285
               
               
               Cow position:chr3:54506686-54506888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1285
               
               
               Cow position:chr3:75966802-75966599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:1080-1288
               
               
               Cow position:chr3:48459350-48459145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:1082-1268
               
               
               Cow position:chr3:62370036-62370223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:1082-1277
               
               
               Cow position:chr3:29234701-29234503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 116

               
               
               Conread position:1082-1283
               
               
               Cow position:chr3:7860272-7860068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr3:48851989-48851785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1082-1283
               
               
               Cow position:chr3:51329250-51329049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:1082-1288
               
               
               Cow position:chr3:28884180-28883976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1082-1293
               
               
               Cow position:chr3:83215243-83215461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1082-1295
               
               
               Cow position:chr3:47199146-47198932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):117, 96

               
               
               Conread position:1082-1296
               
               
               Cow position:chr3:49482735-49482516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 99

               
               
               Conread position:1082-1296
               
               
               Cow position:chr3:58134705-58134491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1083-1268
               
               
               Cow position:chr3:20021251-20021434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1083-1277
               
               
               Cow position:chr3:54373878-54373682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):113, 81

               
               
               Conread position:1083-1279
               
               
               Cow position:chr3:985996-986192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 72

               
               
               Conread position:1083-1279
               
               
               Cow position:chr3:35074860-35075049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1083-1279
               
               
               Cow position:chr3:53604764-53604567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):72, 92

               
               
               Conread position:1083-1283
               
               
               Cow position:chr3:34871549-34871749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:1083-1283
               
               
               Cow position:chr3:59947647-59947849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 79

               
               
               Conread position:1083-1288
               
               
               Cow position:chr3:9663190-9662983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr3:30180068-30180271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):193, 88

               
               
               Conread position:1083-1295
               
               
               Cow position:chr3:79271729-79271514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 82

               
               
               Conread position:1083-1296
               
               
               Cow position:chr3:55712422-55712627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):193, 83

               
               
               Conread position:1083-1296
               
               
               Cow position:chr3:68587005-68587214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:1083-1296
               
               
               Cow position:chr3:84137833-84137620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 105

               
               
               Conread position:1084-1280
               
               
               Cow position:chr3:61024040-61023843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):108, 187

               
               
               Conread position:1084-1287
               
               
               Cow position:chr3:76056302-76056103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1084-1293
               
               
               Cow position:chr3:56943943-56943740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1084-1295
               
               
               Cow position:chr3:16710816-16710604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:1084-1296
               
               
               Cow position:chr3:40213051-40212840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):192, 81

               
               
               Conread position:1084-1296
               
               
               Cow position:chr3:66885043-66884836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1085-1262
               
               
               Cow position:chr3:68627703-68627527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:1085-1277
               
               
               Cow position:chr3:25735922-25735728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 86

               
               
               Conread position:1085-1279
               
               
               Cow position:chr3:33002371-33002562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:1085-1285
               
               
               Cow position:chr3:8523166-8522972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:1085-1288
               
               
               Cow position:chr3:39969879-39969674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:1085-1289
               
               
               Cow position:chr3:72342229-72342435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 78

               
               
               Conread position:1086-1285
               
               
               Cow position:chr3:74234171-74234363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1086-1287
               
               
               Cow position:chr3:76155972-76156169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1086-1288
               
               
               Cow position:chr3:23105377-23105179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1086-1288
               
               
               Cow position:chr3:82425090-82424895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:1087-1296
               
               
               Cow position:chr3:44782329-44782533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):195, 25

               
               
               Conread position:1088-1296
               
               
               Cow position:chr3:3656501-3656712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):110, 77

               
               
               Conread position:1088-1296
               
               
               Cow position:chr3:76168645-76168436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:1089-1275
               
               
               Cow position:chr3:68616339-68616162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1089-1291
               
               
               Cow position:chr3:43389140-43388936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 75

               
               
               Conread position:1090-1277
               
               
               Cow position:chr3:41510565-41510753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1090-1278
               
               
               Cow position:chr3:52845545-52845731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1090-1296
               
               
               Cow position:chr3:17331714-17331914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):192, 25

               
               
               Conread position:1090-1296
               
               
               Cow position:chr3:78258766-78258556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:1091-1287
               
               
               Cow position:chr3:23818481-23818671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1091-1293
               
               
               Cow position:chr3:83474735-83474944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 192

               
               
               Conread position:1092-1277
               
               
               Cow position:chr3:19709101-19709280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1092-1277
               
               
               Cow position:chr3:22868729-22868541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:1093-1267
               
               
               Cow position:chr3:53150323-53150498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 85

               
               
               Conread position:1093-1289
               
               
               Cow position:chr3:39912691-39912500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 72

               
               
               Conread position:1093-1289
               
               
               Cow position:chr3:43896068-43895876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1093-1293
               
               
               Cow position:chr3:17058554-17058356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1093-1296
               
               
               Cow position:chr3:30940799-30940999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:1096-1279
               
               
               Cow position:chr3:44594619-44594800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:1096-1287
               
               
               Cow position:chr3:55730474-55730281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):103, 68

               
               
               Conread position:1096-1294
               
               
               Cow position:chr3:81616458-81616258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:1096-1295
               
               
               Cow position:chr3:15795214-15795416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 69

               
               
               Conread position:1099-1281
               
               
               Cow position:chr3:2016433-2016611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1099-1283
               
               
               Cow position:chr3:31361423-31361604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1099-1289
               
               
               Cow position:chr3:59597176-59597362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):168, 79

               
               
               Conread position:1100-1288
               
               
               Cow position:chr3:57704335-57704517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1100-1289
               
               
               Cow position:chr3:17531739-17531549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1102-1277
               
               
               Cow position:chr3:68648175-68648352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1105-1285
               
               
               Cow position:chr3:74050698-74050524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1106-1283
               
               
               Cow position:chr3:71231401-71231579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:1106-1285
               
               
               Cow position:chr3:24774658-24774824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1106-1288
               
               
               Cow position:chr3:21959664-21959851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:1107-1261
               
               
               Cow position:chr3:5737757-5737905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1107-1277
               
               
               Cow position:chr3:22676104-22675933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:1107-1295
               
               
               Cow position:chr3:19611346-19611159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):162, 72

               
               
               Conread position:1108-1277
               
               
               Cow position:chr3:26393293-26393124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 75

               
               
               Conread position:1116-1296
               
               
               Cow position:chr3:44724876-44725062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1117-1277
               
               
               Cow position:chr3:2636965-2637120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1117-1283
               
               
               Cow position:chr3:57641816-57641984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:1117-1288
               
               
               Cow position:chr3:3262818-3262638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 168

               
               
               Conread position:1119-1279
               
               
               Cow position:chr3:77098805-77098647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1126-1282
               
               
               Cow position:chr3:75907936-75908090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:1130-1291
               
               
               Cow position:chr3:8540536-8540691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):152, 49

               
               
               Conread position:1142-1284
               
               
               Cow position:chr3:39902473-39902329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1049-1285
               
               
               Cow position:chr4:67393056-67393294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):152, 116

               
               
               Conread position:1063-1296
               
               
               Cow position:chr4:44184136-44183910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 96

               
               
               Conread position:1064-1296
               
               
               Cow position:chr4:5790625-5790856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:1066-1288
               
               
               Cow position:chr4:19118999-19119220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):209, 0

               
               
               Conread position:1067-1276
               
               
               Cow position:chr4:47730841-47731054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1067-1276
               
               
               Cow position:chr4:68387776-68387979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 28

               
               
               Conread position:1067-1278
               
               
               Cow position:chr4:48152388-48152179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 49

               
               
               Conread position:1067-1283
               
               
               Cow position:chr4:31136739-31136952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):149, 37

               
               
               Conread position:1067-1285
               
               
               Cow position:chr4:11969439-11969653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):107, 48

               
               
               Conread position:1067-1288
               
               
               Cow position:chr4:10915851-10915632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:1067-1288
               
               
               Cow position:chr4:17851270-17851058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):212, 119

               
               
               Conread position:1067-1289
               
               
               Cow position:chr4:60527163-60527384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:1067-1295
               
               
               Cow position:chr4:19333369-19333592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1295
               
               
               Cow position:chr4:35981979-35982205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:1067-1296
               
               
               Cow position:chr4:18951956-18952186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):118, 206

               
               
               Conread position:1067-1296
               
               
               Cow position:chr4:19316022-19315797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):134, 48

               
               
               Conread position:1067-1296
               
               
               Cow position:chr4:20027120-20026894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):209, 98

               
               
               Conread position:1068-1176
               
               
               Cow position:chr4:38952537-38952646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1206
               
               
               Cow position:chr4:11871938-11871798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1224
               
               
               Cow position:chr4:19323958-19324112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1254
               
               
               Cow position:chr4:25537531-25537718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:1068-1267
               
               
               Cow position:chr4:34653885-34653694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1068-1271
               
               
               Cow position:chr4:34983512-34983319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr4:19102897-19102689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):124, 5

               
               
               Conread position:1068-1273
               
               
               Cow position:chr4:52832032-52831828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr4:17186365-17186159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):139, 5

               
               
               Conread position:1068-1276
               
               
               Cow position:chr4:4319168-4318964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 112

               
               
               Conread position:1068-1276
               
               
               Cow position:chr4:33838816-33838613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1276
               
               
               Cow position:chr4:44854306-44854097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):143, 7

               
               
               Conread position:1068-1277
               
               
               Cow position:chr4:21506972-21506773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):195, 111

               
               
               Conread position:1068-1277
               
               
               Cow position:chr4:53134580-53134788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 131

               
               
               Conread position:1068-1277
               
               
               Cow position:chr4:65463517-65463322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr4:43916272-43916485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr4:48485978-48486189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr4:386408-386198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):136, 50

               
               
               Conread position:1068-1282
               
               
               Cow position:chr4:38935343-38935554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):134, 92

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:13241609-13241835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):127, 81

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:13344522-13344733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:16221893-16221674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:19199303-19199085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 97

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:19700082-19700305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 44

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:44903278-44903481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:46136734-46136947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):201, 110

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:56239876-56239667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):118, 110

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:60141533-60141329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):205, 24

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:60719085-60719290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):201, 110

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:62472063-62472273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:65919595-65919815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:1068-1283
               
               
               Cow position:chr4:68944198-68943983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1284
               
               
               Cow position:chr4:42423821-42423606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):205, 111

               
               
               Conread position:1068-1285
               
               
               Cow position:chr4:46393421-46393641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:1068-1285
               
               
               Cow position:chr4:51728061-51728274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:1068-1285
               
               
               Cow position:chr4:59002155-59001940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1068-1286
               
               
               Cow position:chr4:10558520-10558736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr4:12441879-12442110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):127, 81

               
               
               Conread position:1068-1288
               
               
               Cow position:chr4:19501108-19500887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):134, 114

               
               
               Conread position:1068-1288
               
               
               Cow position:chr4:21161089-21161307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):218, 111

               
               
               Conread position:1068-1288
               
               
               Cow position:chr4:40995715-40995937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:1068-1288
               
               
               Cow position:chr4:47038751-47038972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 106

               
               
               Conread position:1068-1289
               
               
               Cow position:chr4:18099078-18098858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):157, 118

               
               
               Conread position:1068-1289
               
               
               Cow position:chr4:27530102-27530315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1289
               
               
               Cow position:chr4:28772083-28771867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr4:44612988-44613208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:1068-1290
               
               
               Cow position:chr4:54927456-54927224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1068-1292
               
               
               Cow position:chr4:38157104-38156887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1293
               
               
               Cow position:chr4:8182656-8182427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 189

               
               
               Conread position:1068-1294
               
               
               Cow position:chr4:23847065-23846846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1068-1294
               
               
               Cow position:chr4:66547784-66547555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 117

               
               
               Conread position:1068-1295
               
               
               Cow position:chr4:28841400-28841630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):98, 175

               
               
               Conread position:1068-1295
               
               
               Cow position:chr4:44773059-44772833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):98, 114

               
               
               Conread position:1068-1296
               
               
               Cow position:chr4:3687906-3688138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 131

               
               
               Conread position:1068-1296
               
               
               Cow position:chr4:5727828-5728042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:1068-1296
               
               
               Cow position:chr4:36290608-36290833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:1068-1296
               
               
               Cow position:chr4:46560164-46560388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:1069-1263
               
               
               Cow position:chr4:19097273-19097468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):124, 48

               
               
               Conread position:1069-1263
               
               
               Cow position:chr4:26901312-26901499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1069-1265
               
               
               Cow position:chr4:54478933-54478735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:1069-1273
               
               
               Cow position:chr4:14020484-14020686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 45

               
               
               Conread position:1069-1274
               
               
               Cow position:chr4:3283463-3283266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 103

               
               
               Conread position:1069-1276
               
               
               Cow position:chr4:21531658-21531449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1069-1278
               
               
               Cow position:chr4:45077092-45076887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 106

               
               
               Conread position:1069-1279
               
               
               Cow position:chr4:50687876-50687672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):142, 80

               
               
               Conread position:1069-1279
               
               
               Cow position:chr4:51851191-51851405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 116

               
               
               Conread position:1069-1280
               
               
               Cow position:chr4:10895848-10895633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:1069-1286
               
               
               Cow position:chr4:23600152-23600364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):131, 117

               
               
               Conread position:1069-1288
               
               
               Cow position:chr4:3340937-3341155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):123, 176

               
               
               Conread position:1069-1288
               
               
               Cow position:chr4:45874481-45874260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 95

               
               
               Conread position:1069-1293
               
               
               Cow position:chr4:29318091-29317861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 189

               
               
               Conread position:1069-1293
               
               
               Cow position:chr4:54391033-54390806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 95

               
               
               Conread position:1069-1294
               
               
               Cow position:chr4:19431712-19431482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 115

               
               
               Conread position:1069-1296
               
               
               Cow position:chr4:2525791-2525555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):97, 215

               
               
               Conread position:1069-1296
               
               
               Cow position:chr4:47125861-47125628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 99

               
               
               Conread position:1070-1268
               
               
               Cow position:chr4:1026248-1026056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1070-1268
               
               
               Cow position:chr4:13590069-13590269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):94, 110

               
               
               Conread position:1070-1273
               
               
               Cow position:chr4:3421608-3421811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):105, 129

               
               
               Conread position:1070-1275
               
               
               Cow position:chr4:41907596-41907393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1277
               
               
               Cow position:chr4:34630884-34631098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr4:26659285-26659492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:1070-1278
               
               
               Cow position:chr4:34022599-34022394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1070-1282
               
               
               Cow position:chr4:21874161-21874374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):99, 94

               
               
               Conread position:1070-1283
               
               
               Cow position:chr4:46435310-46435531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr4:22138236-22138014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:1070-1291
               
               
               Cow position:chr4:19435241-19435451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1073-1264
               
               
               Cow position:chr4:13995376-13995566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):121, 42

               
               
               Conread position:1073-1264
               
               
               Cow position:chr4:48422866-48423046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1073-1278
               
               
               Cow position:chr4:23190684-23190478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 93

               
               
               Conread position:1073-1282
               
               
               Cow position:chr4:85683-85889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 107

               
               
               Conread position:1073-1284
               
               
               Cow position:chr4:13693683-13693475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):182, 92

               
               
               Conread position:1073-1296
               
               
               Cow position:chr4:4647388-4647612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):101, 83

               
               
               Conread position:1074-1287
               
               
               Cow position:chr4:32790013-32789815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1075-1265
               
               
               Cow position:chr4:60621598-60621416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:1075-1290
               
               
               Cow position:chr4:4084459-4084251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):199, 84

               
               
               Conread position:1075-1295
               
               
               Cow position:chr4:69290752-69290532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):143, 99

               
               
               Conread position:1075-1296
               
               
               Cow position:chr4:31177815-31178032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1076-1288
               
               
               Cow position:chr4:45483792-45484006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:1077-1283
               
               
               Cow position:chr4:54785933-54785733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):171, 9

               
               
               Conread position:1078-1277
               
               
               Cow position:chr4:69305621-69305826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:1078-1288
               
               
               Cow position:chr4:561626-561831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1078-1296
               
               
               Cow position:chr4:1015064-1015280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 96

               
               
               Conread position:1079-1283
               
               
               Cow position:chr4:22101270-22101062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):119, 86

               
               
               Conread position:1079-1295
               
               
               Cow position:chr4:38209980-38209768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1079-1295
               
               
               Cow position:chr4:46404909-46404703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:1080-1277
               
               
               Cow position:chr4:24810453-24810260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:1080-1278
               
               
               Cow position:chr4:11187447-11187646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:1080-1278
               
               
               Cow position:chr4:46566474-46566279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr4:34641730-34641526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 85

               
               
               Conread position:1080-1285
               
               
               Cow position:chr4:38944260-38944059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1080-1293
               
               
               Cow position:chr4:36841265-36841467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):206, 35

               
               
               Conread position:1081-1288
               
               
               Cow position:chr4:50494768-50494981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1082-1282
               
               
               Cow position:chr4:38977893-38977693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):78, 103

               
               
               Conread position:1082-1283
               
               
               Cow position:chr4:61887634-61887838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:1082-1295
               
               
               Cow position:chr4:6148932-6148720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 24

               
               
               Conread position:1082-1296
               
               
               Cow position:chr4:32693785-32694000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:1083-1268
               
               
               Cow position:chr4:40414629-40414445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):180, 95

               
               
               Conread position:1083-1275
               
               
               Cow position:chr4:37915336-37915149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1083-1279
               
               
               Cow position:chr4:26959970-26959773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 81

               
               
               Conread position:1083-1279
               
               
               Cow position:chr4:45249969-45250166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 159

               
               
               Conread position:1083-1282
               
               
               Cow position:chr4:47305076-47305277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:1083-1283
               
               
               Cow position:chr4:60131224-60131427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 84

               
               
               Conread position:1083-1288
               
               
               Cow position:chr4:30769034-30769236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):193, 57

               
               
               Conread position:1083-1289
               
               
               Cow position:chr4:19573283-19573492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):72, 87

               
               
               Conread position:1083-1290
               
               
               Cow position:chr4:16814381-16814594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):109, 194

               
               
               Conread position:1083-1295
               
               
               Cow position:chr4:32561828-32562042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 81

               
               
               Conread position:1083-1295
               
               
               Cow position:chr4:53347971-53347770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:1083-1296
               
               
               Cow position:chr4:56410344-56410553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr4:63078221-63078436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:1084-1273
               
               
               Cow position:chr4:46527001-46527191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1084-1275
               
               
               Cow position:chr4:42374156-42373966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1084-1279
               
               
               Cow position:chr4:5250187-5250384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 87

               
               
               Conread position:1084-1279
               
               
               Cow position:chr4:12127639-12127446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 75

               
               
               Conread position:1084-1283
               
               
               Cow position:chr4:37732483-37732282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1084-1284
               
               
               Cow position:chr4:47048118-47048313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):191, 7

               
               
               Conread position:1084-1293
               
               
               Cow position:chr4:29106907-29107121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1085-1275
               
               
               Cow position:chr4:25720-25541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1085-1278
               
               
               Cow position:chr4:23451094-23450898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1085-1281
               
               
               Cow position:chr4:20147184-20147381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 100

               
               
               Conread position:1085-1283
               
               
               Cow position:chr4:27521554-27521757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:1085-1288
               
               
               Cow position:chr4:37991593-37991789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1086-1268
               
               
               Cow position:chr4:19122874-19123052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1086-1277
               
               
               Cow position:chr4:51083336-51083149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):157, 92

               
               
               Conread position:1086-1293
               
               
               Cow position:chr4:65173104-65173309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1088-1288
               
               
               Cow position:chr4:7964644-7964445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:1089-1288
               
               
               Cow position:chr4:39010054-39010257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 190

               
               
               Conread position:1089-1295
               
               
               Cow position:chr4:59277474-59277267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:1090-1277
               
               
               Cow position:chr4:30691010-30691193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1090-1295
               
               
               Cow position:chr4:23757774-23757981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):85, 74

               
               
               Conread position:1091-1278
               
               
               Cow position:chr4:22071665-22071480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 152

               
               
               Conread position:1091-1283
               
               
               Cow position:chr4:4186126-4186315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 95

               
               
               Conread position:1092-1296
               
               
               Cow position:chr4:3519429-3519629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1095-1273
               
               
               Cow position:chr4:22331135-22331307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):112, 83

               
               
               Conread position:1096-1239
               
               
               Cow position:chr4:479780-479640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1096-1277
               
               
               Cow position:chr4:33970885-33970714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1096-1279
               
               
               Cow position:chr4:19578397-19578576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:1096-1283
               
               
               Cow position:chr4:25802702-25802892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 86

               
               
               Conread position:1096-1288
               
               
               Cow position:chr4:56395523-56395719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1096-1296
               
               
               Cow position:chr4:13660099-13660305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 71

               
               
               Conread position:1097-1285
               
               
               Cow position:chr4:62794351-62794157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1098-1277
               
               
               Cow position:chr4:68590785-68590960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1099-1282
               
               
               Cow position:chr4:28854257-28854080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1099-1291
               
               
               Cow position:chr4:22215496-22215308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1099-1296
               
               
               Cow position:chr4:4085096-4084896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:1100-1283
               
               
               Cow position:chr4:27656993-27657169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1101-1254
               
               
               Cow position:chr4:53380704-53380859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 77

               
               
               Conread position:1102-1296
               
               
               Cow position:chr4:19542954-19543153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1102-1296
               
               
               Cow position:chr4:28660533-28660336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1104-1288
               
               
               Cow position:chr4:65291836-65291661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):139, 67

               
               
               Conread position:1105-1278
               
               
               Cow position:chr4:34919249-34919082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1116-1273
               
               
               Cow position:chr4:63293491-63293645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1117-1268
               
               
               Cow position:chr4:36070735-36070884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 63

               
               
               Conread position:1117-1276
               
               
               Cow position:chr4:61524465-61524620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1117-1281
               
               
               Cow position:chr4:39569236-39569395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):151, 62

               
               
               Conread position:1117-1282
               
               
               Cow position:chr4:38940910-38940746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1117-1291
               
               
               Cow position:chr4:36545244-36545073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1117-1295
               
               
               Cow position:chr4:11099622-11099450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):158, 61

               
               
               Conread position:1117-1295
               
               
               Cow position:chr4:17051253-17051075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 57

               
               
               Conread position:1117-1296
               
               
               Cow position:chr4:20153516-20153346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1118-1294
               
               
               Cow position:chr4:23925351-23925168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 171

               
               
               Conread position:1118-1295
               
               
               Cow position:chr4:30943988-30944162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1119-1296
               
               
               Cow position:chr4:12908408-12908580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):160, 60

               
               
               Conread position:1120-1278
               
               
               Cow position:chr4:27425747-27425900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):133, 58

               
               
               Conread position:1123-1295
               
               
               Cow position:chr4:62821017-62820849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1126-1285
               
               
               Cow position:chr4:19503970-19504121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1130-1294
               
               
               Cow position:chr4:19463590-19463757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 53

               
               
               Conread position:1133-1294
               
               
               Cow position:chr4:42608787-42608947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 46

               
               
               Conread position:1136-1283
               
               
               Cow position:chr4:10786088-10785943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 35

               
               
               Conread position:1139-1288
               
               
               Cow position:chr4:34544361-34544507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1033-1283
               
               
               Cow position:chr5:38820681-38820426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:1043-1283
               
               
               Cow position:chr5:28814954-28814717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):124, 14

               
               
               Conread position:1044-1285
               
               
               Cow position:chr5:51247138-51246903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 136

               
               
               Conread position:1050-1296
               
               
               Cow position:chr5:50824591-50824827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1051-1294
               
               
               Cow position:chr5:38833123-38833357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1055-1277
               
               
               Cow position:chr5:63173041-63172822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 49

               
               
               Conread position:1055-1283
               
               
               Cow position:chr5:270096-269865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:1056-1288
               
               
               Cow position:chr5:47601817-47602046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):226, 123

               
               
               Conread position:1058-1283
               
               
               Cow position:chr5:23208963-23209192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:1061-1283
               
               
               Cow position:chr5:55068716-55068932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:1063-1279
               
               
               Cow position:chr5:12901928-12902147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 102

               
               
               Conread position:1063-1288
               
               
               Cow position:chr5:18289136-18289357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:1063-1296
               
               
               Cow position:chr5:30796962-30796729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:1064-1295
               
               
               Cow position:chr5:35247099-35246861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1065-1273
               
               
               Cow position:chr5:44722498-44722291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1067-1210
               
               
               Cow position:chr5:23168810-23168667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1067-1260
               
               
               Cow position:chr5:66466335-66466522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:1067-1264
               
               
               Cow position:chr5:12351791-12351599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):88, 95

               
               
               Conread position:1067-1264
               
               
               Cow position:chr5:35826618-35826811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):172, 116

               
               
               Conread position:1067-1265
               
               
               Cow position:chr5:66551881-66551678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:1067-1275
               
               
               Cow position:chr5:40109509-40109708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1067-1278
               
               
               Cow position:chr5:34624975-34625175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:1067-1279
               
               
               Cow position:chr5:30302911-30303109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1067-1282
               
               
               Cow position:chr5:64139576-64139794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):123, 150

               
               
               Conread position:1067-1283
               
               
               Cow position:chr5:9894106-9893893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 6

               
               
               Conread position:1067-1283
               
               
               Cow position:chr5:21617474-21617687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1067-1285
               
               
               Cow position:chr5:45845675-45845457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):89, 102

               
               
               Conread position:1067-1293
               
               
               Cow position:chr5:45187101-45186874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 80

               
               
               Conread position:1067-1296
               
               
               Cow position:chr5:64555545-64555779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 100

               
               
               Conread position:1068-1202
               
               
               Cow position:chr5:35982721-35982586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1068-1238
               
               
               Cow position:chr5:17605117-17604949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:1068-1265
               
               
               Cow position:chr5:45397590-45397779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr5:68718887-68719081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 47

               
               
               Conread position:1068-1268
               
               
               Cow position:chr5:50600064-50600263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):62, 119

               
               
               Conread position:1068-1275
               
               
               Cow position:chr5:30253758-30253964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr5:30276707-30276911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):178, 103

               
               
               Conread position:1068-1276
               
               
               Cow position:chr5:69099737-69099944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr5:16893754-16893553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr5:49474528-49474328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr5:56028522-56028319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr5:56548589-56548792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:1068-1277
               
               
               Cow position:chr5:63192723-63192528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr5:30629142-30628926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:1068-1278
               
               
               Cow position:chr5:51555064-51554858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr5:53835734-53835948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:1068-1278
               
               
               Cow position:chr5:60212601-60212814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 129

               
               
               Conread position:1068-1278
               
               
               Cow position:chr5:60948150-60948359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr5:3582577-3582785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr5:6520028-6520236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 93

               
               
               Conread position:1068-1281
               
               
               Cow position:chr5:42050570-42050774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr5:62172429-62172628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr5:67679196-67679412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 114

               
               
               Conread position:1068-1282
               
               
               Cow position:chr5:66257656-66257866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):200, 47

               
               
               Conread position:1068-1282
               
               
               Cow position:chr5:69383272-69383482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr5:22795234-22795438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr5:28681500-28681283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr5:30178487-30178269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chr5:30232925-30233142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):105, 90

               
               
               Conread position:1068-1283
               
               
               Cow position:chr5:56070876-56071089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr5:57393287-57393070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:1068-1283
               
               
               Cow position:chr5:60422953-60422737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr5:61725984-61726189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1068-1284
               
               
               Cow position:chr5:35459277-35459062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:1068-1284
               
               
               Cow position:chr5:65941233-65941017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):141, 110

               
               
               Conread position:1068-1285
               
               
               Cow position:chr5:2240972-2240756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:1068-1287
               
               
               Cow position:chr5:41165105-41165319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):206, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr5:22242755-22242538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:1068-1288
               
               
               Cow position:chr5:26147609-26147824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr5:26467643-26467866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 186

               
               
               Conread position:1068-1288
               
               
               Cow position:chr5:30845130-30845341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr5:56014748-56014959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr5:61049349-61049572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):107, 97

               
               
               Conread position:1068-1290
               
               
               Cow position:chr5:43402922-43403148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):107, 103

               
               
               Conread position:1068-1290
               
               
               Cow position:chr5:55942362-55942140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):138, 105

               
               
               Conread position:1068-1294
               
               
               Cow position:chr5:12673456-12673237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr5:7177168-7177399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 106

               
               
               Conread position:1068-1295
               
               
               Cow position:chr5:52852988-52853212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):218, 97

               
               
               Conread position:1068-1295
               
               
               Cow position:chr5:57074314-57074094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:17835141-17834909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 79

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:19335764-19335533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:26167439-26167664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):148, 5

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:39447518-39447280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:44446848-44446630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:46512751-46512524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:52001606-52001376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):106, 97

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:52137037-52136804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:55966863-55966630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 209

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:59626954-59626726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 97

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:65752877-65753103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):153, 110

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:69337837-69338059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):101, 96

               
               
               Conread position:1068-1296
               
               
               Cow position:chr5:69461350-69461579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:1069-1263
               
               
               Cow position:chr5:38168912-38169104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):87, 110

               
               
               Conread position:1069-1266
               
               
               Cow position:chr5:17555014-17554820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 93

               
               
               Conread position:1069-1274
               
               
               Cow position:chr5:55259426-55259631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 103

               
               
               Conread position:1069-1275
               
               
               Cow position:chr5:14920912-14920702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1069-1278
               
               
               Cow position:chr5:51298694-51298488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr5:64321772-64321994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 152

               
               
               Conread position:1069-1284
               
               
               Cow position:chr5:34562034-34562242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:1069-1285
               
               
               Cow position:chr5:24996204-24995987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):155, 62

               
               
               Conread position:1069-1287
               
               
               Cow position:chr5:39035798-39036019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):129, 91

               
               
               Conread position:1069-1287
               
               
               Cow position:chr5:64060464-64060682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 42

               
               
               Conread position:1069-1287
               
               
               Cow position:chr5:66339097-66339308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:1069-1288
               
               
               Cow position:chr5:21828886-21829100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr5:40241764-40241970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1069-1291
               
               
               Cow position:chr5:46541037-46540819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:1069-1292
               
               
               Cow position:chr5:54312619-54312844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):136, 109

               
               
               Conread position:1069-1294
               
               
               Cow position:chr5:60515010-60514783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):103, 71

               
               
               Conread position:1069-1295
               
               
               Cow position:chr5:49407375-49407149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 98

               
               
               Conread position:1069-1295
               
               
               Cow position:chr5:55965876-55965648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):137, 95

               
               
               Conread position:1069-1296
               
               
               Cow position:chr5:26549122-26548898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr5:43604159-43604385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:1069-1296
               
               
               Cow position:chr5:65679952-65679728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:1070-1257
               
               
               Cow position:chr5:46704280-46704094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1070-1268
               
               
               Cow position:chr5:74580808-74581003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr5:66366529-66366737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):194, 51

               
               
               Conread position:1070-1278
               
               
               Cow position:chr5:70270886-70271094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 115

               
               
               Conread position:1070-1284
               
               
               Cow position:chr5:35684957-35685166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:1070-1287
               
               
               Cow position:chr5:44028284-44028073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:1070-1288
               
               
               Cow position:chr5:33560715-33560501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr5:60016187-60016401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1295
               
               
               Cow position:chr5:44810220-44809993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):105, 94

               
               
               Conread position:1070-1296
               
               
               Cow position:chr5:64176107-64175887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1070-1296
               
               
               Cow position:chr5:74039984-74039757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):204, 95

               
               
               Conread position:1071-1243
               
               
               Cow position:chr5:17602186-17602013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:1071-1276
               
               
               Cow position:chr5:7012833-7012624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:1071-1288
               
               
               Cow position:chr5:57756014-57755798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:1072-1289
               
               
               Cow position:chr5:70678623-70678407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:1073-1276
               
               
               Cow position:chr5:73253433-73253630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1073-1288
               
               
               Cow position:chr5:20288241-20288023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):102, 202

               
               
               Conread position:1073-1288
               
               
               Cow position:chr5:61914585-61914808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1074-1279
               
               
               Cow position:chr5:19079275-19079471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1074-1285
               
               
               Cow position:chr5:17086997-17086784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:1075-1283
               
               
               Cow position:chr5:17826208-17826419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:1075-1283
               
               
               Cow position:chr5:50943133-50942933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 104

               
               
               Conread position:1075-1288
               
               
               Cow position:chr5:57935084-57934882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):194, 103

               
               
               Conread position:1075-1295
               
               
               Cow position:chr5:19752331-19752544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1075-1296
               
               
               Cow position:chr5:12434567-12434780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1075-1296
               
               
               Cow position:chr5:35190134-35190350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1077-1282
               
               
               Cow position:chr5:29895197-29895402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):134, 101

               
               
               Conread position:1078-1288
               
               
               Cow position:chr5:22667098-22667309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):205, 110

               
               
               Conread position:1079-1283
               
               
               Cow position:chr5:24915499-24915292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:1079-1289
               
               
               Cow position:chr5:25495330-25495111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):95, 179

               
               
               Conread position:1079-1294
               
               
               Cow position:chr5:1694060-1693848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):200, 107

               
               
               Conread position:1079-1294
               
               
               Cow position:chr5:40122582-40122364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 86

               
               
               Conread position:1079-1296
               
               
               Cow position:chr5:57591716-57591933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):197, 87

               
               
               Conread position:1080-1266
               
               
               Cow position:chr5:16668726-16668908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1268
               
               
               Cow position:chr5:44734696-44734510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1277
               
               
               Cow position:chr5:34288221-34288028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):108, 35

               
               
               Conread position:1080-1281
               
               
               Cow position:chr5:55955937-55956142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 27

               
               
               Conread position:1080-1282
               
               
               Cow position:chr5:72895715-72895917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr5:33273724-33273931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:1080-1285
               
               
               Cow position:chr5:37842250-37842046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):127, 105

               
               
               Conread position:1080-1288
               
               
               Cow position:chr5:12322775-12322575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1080-1288
               
               
               Cow position:chr5:36038972-36038768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:1080-1295
               
               
               Cow position:chr5:44847995-44847781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:1082-1283
               
               
               Cow position:chr5:25035224-25035021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:1082-1283
               
               
               Cow position:chr5:40097627-40097830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr5:53055530-53055326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 78

               
               
               Conread position:1082-1294
               
               
               Cow position:chr5:48154434-48154217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1083-1283
               
               
               Cow position:chr5:61999525-61999323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:1083-1285
               
               
               Cow position:chr5:7057369-7057164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:1083-1288
               
               
               Cow position:chr5:11668153-11667947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 106

               
               
               Conread position:1083-1292
               
               
               Cow position:chr5:57101490-57101285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1083-1293
               
               
               Cow position:chr5:56525681-56525468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:1083-1295
               
               
               Cow position:chr5:4280480-4280689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):193, 96

               
               
               Conread position:1083-1295
               
               
               Cow position:chr5:50101344-50101132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:1083-1296
               
               
               Cow position:chr5:3771880-3772085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr5:17828447-17828232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr5:51053616-51053403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:1084-1277
               
               
               Cow position:chr5:74643644-74643458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1084-1283
               
               
               Cow position:chr5:37255302-37255100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 82

               
               
               Conread position:1084-1291
               
               
               Cow position:chr5:57062496-57062287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 104

               
               
               Conread position:1084-1294
               
               
               Cow position:chr5:39937149-39937359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):115, 10

               
               
               Conread position:1084-1295
               
               
               Cow position:chr5:43371162-43370946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:1085-1254
               
               
               Cow position:chr5:64026985-64026812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1085-1273
               
               
               Cow position:chr5:60523769-60523949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1085-1275
               
               
               Cow position:chr5:14314562-14314740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):183, 103

               
               
               Conread position:1085-1277
               
               
               Cow position:chr5:17104887-17105071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1085-1277
               
               
               Cow position:chr5:32338932-32338735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 94

               
               
               Conread position:1085-1283
               
               
               Cow position:chr5:62995991-62996191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 79

               
               
               Conread position:1085-1284
               
               
               Cow position:chr5:34915019-34914821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):156, 101

               
               
               Conread position:1085-1288
               
               
               Cow position:chr5:15991605-15991408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1085-1288
               
               
               Cow position:chr5:51289557-51289365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1085-1294
               
               
               Cow position:chr5:35208298-35208507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:1086-1283
               
               
               Cow position:chr5:6086308-6086109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1086-1285
               
               
               Cow position:chr5:3817652-3817453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1087-1290
               
               
               Cow position:chr5:57497388-57497186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):192, 92

               
               
               Conread position:1088-1277
               
               
               Cow position:chr5:74887863-74887673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 91

               
               
               Conread position:1088-1292
               
               
               Cow position:chr5:12562723-12562519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:1088-1296
               
               
               Cow position:chr5:19972967-19972757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:1088-1296
               
               
               Cow position:chr5:49821465-49821676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1089-1278
               
               
               Cow position:chr5:35394395-35394212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1089-1289
               
               
               Cow position:chr5:8736241-8736038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:1090-1295
               
               
               Cow position:chr5:25366144-25366343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):106, 72

               
               
               Conread position:1091-1278
               
               
               Cow position:chr5:6438981-6438799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1092-1274
               
               
               Cow position:chr5:60761702-60761519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 10

               
               
               Conread position:1093-1254
               
               
               Cow position:chr5:60741286-60741448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:1093-1283
               
               
               Cow position:chr5:6876926-6876733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1097-1295
               
               
               Cow position:chr5:44312369-44312168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 73

               
               
               Conread position:1097-1296
               
               
               Cow position:chr5:55162672-55162874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):84, 70

               
               
               Conread position:1098-1288
               
               
               Cow position:chr5:55041256-55041451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 99

               
               
               Conread position:1099-1296
               
               
               Cow position:chr5:38683551-38683749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 65

               
               
               Conread position:1102-1288
               
               
               Cow position:chr5:60207759-60207941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1103-1283
               
               
               Cow position:chr5:58401621-58401798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):172, 76

               
               
               Conread position:1103-1291
               
               
               Cow position:chr5:37253481-37253663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1103-1296
               
               
               Cow position:chr5:34918398-34918584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:1104-1277
               
               
               Cow position:chr5:49207274-49207103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1104-1285
               
               
               Cow position:chr5:60100523-60100695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1104-1285
               
               
               Cow position:chr5:60153828-60154000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1104-1295
               
               
               Cow position:chr5:29599493-29599308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):165, 75

               
               
               Conread position:1105-1268
               
               
               Cow position:chr5:74065463-74065303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1106-1277
               
               
               Cow position:chr5:52849140-52849307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1107-1279
               
               
               Cow position:chr5:21721414-21721248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1112-1273
               
               
               Cow position:chr5:66287006-66287163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1112-1278
               
               
               Cow position:chr5:34787635-34787799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1117-1278
               
               
               Cow position:chr5:5030509-5030666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1117-1282
               
               
               Cow position:chr5:6245597-6245434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr5:25462154-25462322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):151, 70

               
               
               Conread position:1117-1288
               
               
               Cow position:chr5:67339949-67340118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1118-1282
               
               
               Cow position:chr5:9559488-9559647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):156, 64

               
               
               Conread position:1118-1283
               
               
               Cow position:chr5:63300145-63300310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 83

               
               
               Conread position:1119-1285
               
               
               Cow position:chr5:46479174-46479013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1120-1295
               
               
               Cow position:chr5:32975827-32976007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 131

               
               
               Conread position:1121-1288
               
               
               Cow position:chr5:47960191-47960026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):156, 57

               
               
               Conread position:1121-1295
               
               
               Cow position:chr5:31648489-31648658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1124-1274
               
               
               Cow position:chr5:19626651-19626799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1124-1283
               
               
               Cow position:chr5:64061092-64061245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1131-1294
               
               
               Cow position:chr5:4728154-4728312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1132-1288
               
               
               Cow position:chr5:3627096-3626944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:1133-1296
               
               
               Cow position:chr5:56624435-56624267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:1134-1285
               
               
               Cow position:chr5:48104344-48104493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:1134-1296
               
               
               Cow position:chr5:18578975-18579136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:1136-1283
               
               
               Cow position:chr5:34639207-34639356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1137-1279
               
               
               Cow position:chr5:74049910-74050052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1161-1278
               
               
               Cow position:chr5:8149196-8149082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1026-1266
               
               
               Cow position:chr6:12623507-12623737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):49, 6

               
               
               Conread position:1056-1279
               
               
               Cow position:chr6:36225127-36225351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):131, 108

               
               
               Conread position:1056-1296
               
               
               Cow position:chr6:21475746-21475984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):220, 115

               
               
               Conread position:1061-1263
               
               
               Cow position:chr6:19695833-19696034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):131, 41

               
               
               Conread position:1061-1296
               
               
               Cow position:chr6:64431961-64432192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 111

               
               
               Conread position:1062-1289
               
               
               Cow position:chr6:41226806-41226596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:1065-1218
               
               
               Cow position:chr6:54349722-54349875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):145, 52

               
               
               Conread position:1066-1296
               
               
               Cow position:chr6:16746372-16746606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):120, 100

               
               
               Conread position:1067-1248
               
               
               Cow position:chr6:26915361-26915538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1067-1257
               
               
               Cow position:chr6:41169506-41169314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1067-1261
               
               
               Cow position:chr6:34119323-34119140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1067-1273
               
               
               Cow position:chr6:38207460-38207250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):103, 93

               
               
               Conread position:1067-1275
               
               
               Cow position:chr6:67069785-67069578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:1067-1283
               
               
               Cow position:chr6:15300799-15300594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):208, 45

               
               
               Conread position:1067-1283
               
               
               Cow position:chr6:53460538-53460326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:1067-1284
               
               
               Cow position:chr6:53024774-53024565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1288
               
               
               Cow position:chr6:17414418-17414200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 114

               
               
               Conread position:1067-1288
               
               
               Cow position:chr6:48097574-48097354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:1067-1291
               
               
               Cow position:chr6:13653383-13653598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:1067-1296
               
               
               Cow position:chr6:17704861-17705095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 99

               
               
               Conread position:1068-1192
               
               
               Cow position:chr6:28977009-28976885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1068-1241
               
               
               Cow position:chr6:61524174-61524001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):145, 120

               
               
               Conread position:1068-1261
               
               
               Cow position:chr6:45690579-45690395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr6:63720231-63720415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1272
               
               
               Cow position:chr6:48379583-48379376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):106, 96

               
               
               Conread position:1068-1275
               
               
               Cow position:chr6:9302686-9302486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr6:61109818-61110019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1068-1276
               
               
               Cow position:chr6:5609414-5609204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:1068-1276
               
               
               Cow position:chr6:58725401-58725605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr6:7128372-7128165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):134, 103

               
               
               Conread position:1068-1277
               
               
               Cow position:chr6:10105948-10105745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr6:16090934-16091136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr6:17068617-17068416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr6:30023916-30024116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr6:32867187-32866982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:1068-1277
               
               
               Cow position:chr6:46860136-46859932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):141, 103

               
               
               Conread position:1068-1278
               
               
               Cow position:chr6:65871068-65871271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr6:8966129-8966332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr6:29485113-29485327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):48, 121

               
               
               Conread position:1068-1282
               
               
               Cow position:chr6:32287670-32287874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr6:36202852-36203065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:1068-1283
               
               
               Cow position:chr6:15305602-15305816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:1068-1283
               
               
               Cow position:chr6:18447485-18447268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:1068-1283
               
               
               Cow position:chr6:24110313-24110530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:1068-1283
               
               
               Cow position:chr6:47648205-47647988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 118

               
               
               Conread position:1068-1283
               
               
               Cow position:chr6:54036111-54035894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):121, 5

               
               
               Conread position:1068-1285
               
               
               Cow position:chr6:120278-120483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr6:42567523-42567743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:1068-1285
               
               
               Cow position:chr6:52478380-52478163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):208, 118

               
               
               Conread position:1068-1286
               
               
               Cow position:chr6:143343-143130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr6:25615064-25614841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:694120-693896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:2078784-2078566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:21293464-21293250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:23466002-23465786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:38640264-38640483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):209, 175

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:51581221-51581003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):201, 47

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:53546066-53546280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):201, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:54365297-54365079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:60144167-60143949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr6:63065857-63066086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):62, 210

               
               
               Conread position:1068-1289
               
               
               Cow position:chr6:2547286-2547512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):182, 120

               
               
               Conread position:1068-1289
               
               
               Cow position:chr6:57571510-57571729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):170, 110

               
               
               Conread position:1068-1292
               
               
               Cow position:chr6:15243286-15243518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):124, 180

               
               
               Conread position:1068-1293
               
               
               Cow position:chr6:19292832-19293054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):144, 110

               
               
               Conread position:1068-1294
               
               
               Cow position:chr6:19264468-19264245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):145, 118

               
               
               Conread position:1068-1294
               
               
               Cow position:chr6:55282263-55282037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):73, 190

               
               
               Conread position:1068-1294
               
               
               Cow position:chr6:59603177-59602959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr6:23353582-23353814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:1068-1295
               
               
               Cow position:chr6:58459753-58459970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr6:60850731-60850953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr6:1866763-1866988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):166, 12

               
               
               Conread position:1068-1296
               
               
               Cow position:chr6:6168721-6168948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 49

               
               
               Conread position:1068-1296
               
               
               Cow position:chr6:13687781-13687561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:1068-1296
               
               
               Cow position:chr6:23938091-23938313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):202, 131

               
               
               Conread position:1068-1296
               
               
               Cow position:chr6:47520084-47520315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr6:50862973-50863208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:1068-1296
               
               
               Cow position:chr6:67728406-67728634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1069-1265
               
               
               Cow position:chr6:54132847-54133038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):127, 61

               
               
               Conread position:1069-1271
               
               
               Cow position:chr6:41375804-41376003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:1069-1277
               
               
               Cow position:chr6:67451615-67451425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1069-1281
               
               
               Cow position:chr6:62669897-62670114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr6:24536501-24536280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 97

               
               
               Conread position:1069-1283
               
               
               Cow position:chr6:55548502-55548288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):207, 155

               
               
               Conread position:1069-1286
               
               
               Cow position:chr6:55297063-55296844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):95, 113

               
               
               Conread position:1069-1287
               
               
               Cow position:chr6:36196242-36196454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):205, 104

               
               
               Conread position:1069-1289
               
               
               Cow position:chr6:8637310-8637527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:1069-1289
               
               
               Cow position:chr6:23696031-23696245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 111

               
               
               Conread position:1069-1294
               
               
               Cow position:chr6:35726126-35726345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1069-1295
               
               
               Cow position:chr6:17313767-17313996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:1069-1295
               
               
               Cow position:chr6:21470397-21470176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1069-1295
               
               
               Cow position:chr6:38853627-38853400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):134, 225

               
               
               Conread position:1069-1296
               
               
               Cow position:chr6:2584974-2585200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):202, 102

               
               
               Conread position:1069-1296
               
               
               Cow position:chr6:3351060-3351287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):200, 147

               
               
               Conread position:1069-1296
               
               
               Cow position:chr6:43345410-43345181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr6:54846248-54846016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:1070-1260
               
               
               Cow position:chr6:1871165-1870975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):149, 116

               
               
               Conread position:1070-1264
               
               
               Cow position:chr6:68816200-68816396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):138, 46

               
               
               Conread position:1070-1277
               
               
               Cow position:chr6:50504489-50504695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):142, 108

               
               
               Conread position:1070-1278
               
               
               Cow position:chr6:66839231-66839433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1070-1281
               
               
               Cow position:chr6:37332141-37332354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):60, 118

               
               
               Conread position:1070-1283
               
               
               Cow position:chr6:12761312-12761525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):103, 68

               
               
               Conread position:1070-1288
               
               
               Cow position:chr6:21184190-21183971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 77

               
               
               Conread position:1070-1288
               
               
               Cow position:chr6:44194516-44194307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1070-1289
               
               
               Cow position:chr6:15937822-15937600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 129

               
               
               Conread position:1070-1289
               
               
               Cow position:chr6:62437447-62437667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:1070-1295
               
               
               Cow position:chr6:51933587-51933796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1296
               
               
               Cow position:chr6:5601735-5601957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):162, 45

               
               
               Conread position:1070-1296
               
               
               Cow position:chr6:32453418-32453646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:1070-1296
               
               
               Cow position:chr6:42034805-42035028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):47, 54

               
               
               Conread position:1071-1265
               
               
               Cow position:chr6:16261812-16262008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 125

               
               
               Conread position:1073-1241
               
               
               Cow position:chr6:61269348-61269514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 106

               
               
               Conread position:1073-1286
               
               
               Cow position:chr6:18118013-18117804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1073-1286
               
               
               Cow position:chr6:46282968-46282743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1073-1287
               
               
               Cow position:chr6:6965361-6965146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:1073-1288
               
               
               Cow position:chr6:68376285-68376066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):136, 44

               
               
               Conread position:1073-1291
               
               
               Cow position:chr6:49421752-49421543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:1074-1254
               
               
               Cow position:chr6:36920937-36920759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1074-1283
               
               
               Cow position:chr6:46465858-46466062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1074-1296
               
               
               Cow position:chr6:44544111-44543888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):122, 17

               
               
               Conread position:1075-1288
               
               
               Cow position:chr6:24468358-24468150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1075-1296
               
               
               Cow position:chr6:3936822-3937045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 29

               
               
               Conread position:1075-1296
               
               
               Cow position:chr6:60273973-60273755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:1075-1296
               
               
               Cow position:chr6:62056652-62056870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):143, 103

               
               
               Conread position:1076-1283
               
               
               Cow position:chr6:53758256-53758047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):98, 90

               
               
               Conread position:1078-1285
               
               
               Cow position:chr6:66978910-66979117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:1078-1288
               
               
               Cow position:chr6:21004717-21004930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:1079-1275
               
               
               Cow position:chr6:21083499-21083304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1080-1211
               
               
               Cow position:chr6:28900369-28900498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1080-1267
               
               
               Cow position:chr6:60740057-60740239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):94, 105

               
               
               Conread position:1080-1273
               
               
               Cow position:chr6:22985812-22985627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1080-1276
               
               
               Cow position:chr6:25773173-25772981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:1080-1285
               
               
               Cow position:chr6:4383522-4383720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1080-1295
               
               
               Cow position:chr6:41657310-41657522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1082-1282
               
               
               Cow position:chr6:13367330-13367527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 80

               
               
               Conread position:1082-1283
               
               
               Cow position:chr6:23058256-23058460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1082-1283
               
               
               Cow position:chr6:55517920-55518122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1082-1283
               
               
               Cow position:chr6:59620698-59620902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr6:62724600-62724804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):120, 77

               
               
               Conread position:1082-1288
               
               
               Cow position:chr6:26408462-26408253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 91

               
               
               Conread position:1082-1288
               
               
               Cow position:chr6:28972991-28972783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1082-1296
               
               
               Cow position:chr6:5095497-5095282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 161

               
               
               Conread position:1082-1296
               
               
               Cow position:chr6:15587550-15587333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):116, 83

               
               
               Conread position:1082-1296
               
               
               Cow position:chr6:22204982-22204764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:1082-1296
               
               
               Cow position:chr6:56061705-56061924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 84

               
               
               Conread position:1083-1276
               
               
               Cow position:chr6:57079469-57079664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1083-1278
               
               
               Cow position:chr6:50467181-50467378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):98, 84

               
               
               Conread position:1083-1279
               
               
               Cow position:chr6:19563438-19563238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr6:8468711-8468905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):193, 99

               
               
               Conread position:1083-1283
               
               
               Cow position:chr6:53711448-53711648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1083-1283
               
               
               Cow position:chr6:55417482-55417287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):193, 82

               
               
               Conread position:1083-1285
               
               
               Cow position:chr6:15058422-15058621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):136, 88

               
               
               Conread position:1083-1288
               
               
               Cow position:chr6:19996660-19996865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:1083-1288
               
               
               Cow position:chr6:35319088-35318883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 76

               
               
               Conread position:1083-1289
               
               
               Cow position:chr6:17997273-17997066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:1083-1289
               
               
               Cow position:chr6:63251877-63251670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 78

               
               
               Conread position:1084-1264
               
               
               Cow position:chr6:40682616-40682442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1084-1277
               
               
               Cow position:chr6:15242883-15243078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):117, 95

               
               
               Conread position:1084-1283
               
               
               Cow position:chr6:21399709-21399508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:1084-1288
               
               
               Cow position:chr6:5330459-5330664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):92, 81

               
               
               Conread position:1085-1273
               
               
               Cow position:chr6:21350985-21350796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 55

               
               
               Conread position:1085-1277
               
               
               Cow position:chr6:1941784-1941595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:1085-1296
               
               
               Cow position:chr6:27636362-27636576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):89, 81

               
               
               Conread position:1086-1285
               
               
               Cow position:chr6:63168715-63168517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 29

               
               
               Conread position:1087-1276
               
               
               Cow position:chr6:36537311-36537125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1087-1288
               
               
               Cow position:chr6:35985087-35984884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):112, 84

               
               
               Conread position:1087-1288
               
               
               Cow position:chr6:67451321-67451123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):113, 91

               
               
               Conread position:1088-1281
               
               
               Cow position:chr6:21535091-21535283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:1088-1282
               
               
               Cow position:chr6:24514495-24514290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:1088-1286
               
               
               Cow position:chr6:46558108-46558302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 77

               
               
               Conread position:1089-1288
               
               
               Cow position:chr6:14383727-14383927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:1090-1268
               
               
               Cow position:chr6:39358288-39358113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1090-1295
               
               
               Cow position:chr6:33960597-33960391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 74

               
               
               Conread position:1090-1296
               
               
               Cow position:chr6:44566477-44566684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1091-1290
               
               
               Cow position:chr6:4323383-4323574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1093-1283
               
               
               Cow position:chr6:32006399-32006211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1093-1296
               
               
               Cow position:chr6:54679583-54679794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:1096-1296
               
               
               Cow position:chr6:28562110-28561910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 68

               
               
               Conread position:1099-1278
               
               
               Cow position:chr6:34423397-34423220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1099-1290
               
               
               Cow position:chr6:53811644-53811838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1101-1275
               
               
               Cow position:chr6:38032920-38033095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1102-1291
               
               
               Cow position:chr6:37994273-37994455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:1102-1296
               
               
               Cow position:chr6:50577585-50577771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1103-1288
               
               
               Cow position:chr6:19936504-19936317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1112-1283
               
               
               Cow position:chr6:7291390-7291556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1112-1288
               
               
               Cow position:chr6:4699782-4699954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1117-1268
               
               
               Cow position:chr6:63182368-63182515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1117-1283
               
               
               Cow position:chr6:34463508-34463345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):146, 65

               
               
               Conread position:1118-1276
               
               
               Cow position:chr6:54406719-54406567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1118-1279
               
               
               Cow position:chr6:28559618-28559781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 65

               
               
               Conread position:1119-1266
               
               
               Cow position:chr6:8726759-8726905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1120-1288
               
               
               Cow position:chr6:21347068-21346904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1121-1295
               
               
               Cow position:chr6:16137687-16137510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:1123-1282
               
               
               Cow position:chr6:1945041-1945202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1123-1295
               
               
               Cow position:chr6:31928722-31928898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:1124-1255
               
               
               Cow position:chr6:53235566-53235436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1132-1282
               
               
               Cow position:chr6:63233610-63233761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1133-1296
               
               
               Cow position:chr6:16016129-16016294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:1134-1288
               
               
               Cow position:chr6:43770802-43770652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1033-1295
               
               
               Cow position:chr7:42943313-42943566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):248, 9

               
               
               Conread position:1050-1296
               
               
               Cow position:chr7:14520026-14519781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):225, 114

               
               
               Conread position:1061-1283
               
               
               Cow position:chr7:30931947-30931736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1061-1295
               
               
               Cow position:chr7:37697827-37698070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 114

               
               
               Conread position:1067-1210
               
               
               Cow position:chr7:3256313-3256172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1067-1276
               
               
               Cow position:chr7:49751161-49751369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:1067-1281
               
               
               Cow position:chr7:20534904-20535117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr7:15616220-15616438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 59

               
               
               Conread position:1067-1286
               
               
               Cow position:chr7:32884197-32884405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):215, 45

               
               
               Conread position:1067-1288
               
               
               Cow position:chr7:4720197-4719975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 49

               
               
               Conread position:1067-1288
               
               
               Cow position:chr7:12495088-12494870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1067-1288
               
               
               Cow position:chr7:38347818-38347593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:1067-1288
               
               
               Cow position:chr7:41872068-41871854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):125, 63

               
               
               Conread position:1067-1290
               
               
               Cow position:chr7:50066084-50065863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):103, 123

               
               
               Conread position:1067-1291
               
               
               Cow position:chr7:27079659-27079883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):107, 121

               
               
               Conread position:1067-1293
               
               
               Cow position:chr7:44454248-44454010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):107, 225

               
               
               Conread position:1067-1294
               
               
               Cow position:chr7:58330798-58330572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:1067-1296
               
               
               Cow position:chr7:25135790-25135562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 203

               
               
               Conread position:1068-1211
               
               
               Cow position:chr7:14766094-14765951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:1068-1237
               
               
               Cow position:chr7:42637005-42637167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):153, 21

               
               
               Conread position:1068-1256
               
               
               Cow position:chr7:50494028-50494217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):106, 165

               
               
               Conread position:1068-1265
               
               
               Cow position:chr7:14316975-14317168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr7:8658548-8658751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chr7:42593245-42593027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr7:32946101-32946305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1275
               
               
               Cow position:chr7:62498016-62497814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:1068-1276
               
               
               Cow position:chr7:10415101-10414900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr7:18247796-18247596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr7:8089198-8089404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:1068-1281
               
               
               Cow position:chr7:6469654-6469871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr7:31523578-31523791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr7:35275044-35274841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr7:11487639-11487430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):133, 52

               
               
               Conread position:1068-1282
               
               
               Cow position:chr7:39939769-39939985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 98

               
               
               Conread position:1068-1282
               
               
               Cow position:chr7:53785947-53785743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 113

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:8821507-8821719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):208, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:9781691-9781473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:11960430-11960638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:15559720-15559931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:21166209-21165993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:23557566-23557350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:24630873-24631091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:32283955-32284172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 57

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:35300385-35300174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:40425279-40425061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:50021425-50021219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr7:53653728-53653521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):200, 107

               
               
               Conread position:1068-1284
               
               
               Cow position:chr7:43333872-43334087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 44

               
               
               Conread position:1068-1285
               
               
               Cow position:chr7:12488466-12488672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):100, 111

               
               
               Conread position:1068-1285
               
               
               Cow position:chr7:29682418-29682198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):108, 95

               
               
               Conread position:1068-1285
               
               
               Cow position:chr7:32894215-32893989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr7:49417639-49417854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):180, 113

               
               
               Conread position:1068-1285
               
               
               Cow position:chr7:56557114-56556905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:1068-1286
               
               
               Cow position:chr7:10183-10398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):201, 21

               
               
               Conread position:1068-1288
               
               
               Cow position:chr7:11897498-11897713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):84, 148

               
               
               Conread position:1068-1288
               
               
               Cow position:chr7:14524512-14524723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 111

               
               
               Conread position:1068-1288
               
               
               Cow position:chr7:22793377-22793587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr7:26263620-26263402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:1068-1288
               
               
               Cow position:chr7:26909727-26909511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr7:33393342-33393560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr7:64268961-64268736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1289
               
               
               Cow position:chr7:47513651-47513432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):142, 68

               
               
               Conread position:1068-1290
               
               
               Cow position:chr7:4764879-4765093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1293
               
               
               Cow position:chr7:26871958-26871733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1068-1294
               
               
               Cow position:chr7:16022328-16022552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):208, 111

               
               
               Conread position:1068-1294
               
               
               Cow position:chr7:19466217-19466001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 106

               
               
               Conread position:1068-1294
               
               
               Cow position:chr7:31170915-31170699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):211, 62

               
               
               Conread position:1068-1294
               
               
               Cow position:chr7:51644684-51644898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chr7:4138723-4138501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):140, 84

               
               
               Conread position:1068-1295
               
               
               Cow position:chr7:29505148-29505372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):200, 110

               
               
               Conread position:1068-1295
               
               
               Cow position:chr7:37498161-37497931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 212

               
               
               Conread position:1068-1295
               
               
               Cow position:chr7:40305220-40304997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):104, 92

               
               
               Conread position:1068-1295
               
               
               Cow position:chr7:48714887-48715123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):130, 223

               
               
               Conread position:1068-1295
               
               
               Cow position:chr7:53053370-53053147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):162, 106

               
               
               Conread position:1068-1296
               
               
               Cow position:chr7:5199515-5199299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr7:6044104-6043878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:1068-1296
               
               
               Cow position:chr7:11796869-11796644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):106, 116

               
               
               Conread position:1068-1296
               
               
               Cow position:chr7:20968450-20968682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 127

               
               
               Conread position:1068-1296
               
               
               Cow position:chr7:30276768-30276997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):124, 97

               
               
               Conread position:1068-1296
               
               
               Cow position:chr7:32774284-32774511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 47

               
               
               Conread position:1068-1296
               
               
               Cow position:chr7:46818461-46818238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):219, 92

               
               
               Conread position:1068-1296
               
               
               Cow position:chr7:47547442-47547665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):103, 87

               
               
               Conread position:1068-1296
               
               
               Cow position:chr7:53097624-53097851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 117

               
               
               Conread position:1069-1253
               
               
               Cow position:chr7:26737313-26737124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:1069-1275
               
               
               Cow position:chr7:56820548-56820350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1069-1277
               
               
               Cow position:chr7:23456787-23456583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 131

               
               
               Conread position:1069-1277
               
               
               Cow position:chr7:39947215-39947006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):165, 109

               
               
               Conread position:1069-1278
               
               
               Cow position:chr7:39415944-39416148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:1069-1281
               
               
               Cow position:chr7:49106165-49105957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):199, 30

               
               
               Conread position:1069-1282
               
               
               Cow position:chr7:15570072-15570283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr7:14029345-14029553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:1069-1283
               
               
               Cow position:chr7:43356198-43356414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 97

               
               
               Conread position:1069-1283
               
               
               Cow position:chr7:55688162-55687935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:1069-1288
               
               
               Cow position:chr7:47931762-47931539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1069-1294
               
               
               Cow position:chr7:58301906-58301685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 111

               
               
               Conread position:1069-1295
               
               
               Cow position:chr7:36665359-36665587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):137, 81

               
               
               Conread position:1069-1296
               
               
               Cow position:chr7:9070496-9070712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):124, 49

               
               
               Conread position:1069-1296
               
               
               Cow position:chr7:9816032-9816260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:1069-1296
               
               
               Cow position:chr7:23624632-23624405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:1069-1296
               
               
               Cow position:chr7:38361203-38360975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:1069-1296
               
               
               Cow position:chr7:48667449-48667663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 30

               
               
               Conread position:1070-1267
               
               
               Cow position:chr7:9660312-9660500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1275
               
               
               Cow position:chr7:15548068-15548269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chr7:46856928-46856726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1290
               
               
               Cow position:chr7:60732601-60732374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:1070-1291
               
               
               Cow position:chr7:29300732-29300519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):211, 109

               
               
               Conread position:1070-1295
               
               
               Cow position:chr7:59438486-59438711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 94

               
               
               Conread position:1071-1288
               
               
               Cow position:chr7:35088693-35088910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):117, 210

               
               
               Conread position:1071-1296
               
               
               Cow position:chr7:17750806-17750580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:1073-1211
               
               
               Cow position:chr7:598282-598415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1073-1283
               
               
               Cow position:chr7:40406687-40406891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1073-1286
               
               
               Cow position:chr7:15534039-15533833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:1074-1278
               
               
               Cow position:chr7:18544342-18544148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1074-1288
               
               
               Cow position:chr7:23205590-23205376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:1075-1277
               
               
               Cow position:chr7:11785004-11784804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1075-1279
               
               
               Cow position:chr7:4452646-4452847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:1075-1282
               
               
               Cow position:chr7:17713431-17713216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1075-1283
               
               
               Cow position:chr7:6821085-6821294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):135, 122

               
               
               Conread position:1075-1288
               
               
               Cow position:chr7:57243192-57242973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1075-1291
               
               
               Cow position:chr7:36856575-36856789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):99, 128

               
               
               Conread position:1075-1296
               
               
               Cow position:chr7:7510813-7510593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):128, 113

               
               
               Conread position:1076-1285
               
               
               Cow position:chr7:66748496-66748283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:1078-1283
               
               
               Cow position:chr7:61389898-61390106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):103, 92

               
               
               Conread position:1079-1243
               
               
               Cow position:chr7:32222109-32222270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1079-1288
               
               
               Cow position:chr7:17752755-17752553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1080-1273
               
               
               Cow position:chr7:48721854-48721668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr7:61005944-61006148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):96, 8

               
               
               Conread position:1080-1285
               
               
               Cow position:chr7:11054596-11054804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):94, 139

               
               
               Conread position:1080-1290
               
               
               Cow position:chr7:14534968-14535175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 106

               
               
               Conread position:1080-1294
               
               
               Cow position:chr7:9077765-9077551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 99

               
               
               Conread position:1080-1295
               
               
               Cow position:chr7:36996407-36996616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1082-1279
               
               
               Cow position:chr7:63772096-63772294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 108

               
               
               Conread position:1082-1295
               
               
               Cow position:chr7:40008876-40009087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):74, 99

               
               
               Conread position:1082-1296
               
               
               Cow position:chr7:12918530-12918324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1082-1296
               
               
               Cow position:chr7:22730246-22730466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:1083-1285
               
               
               Cow position:chr7:25415443-25415645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1083-1285
               
               
               Cow position:chr7:38429663-38429468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr7:23677974-23678181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 91

               
               
               Conread position:1083-1288
               
               
               Cow position:chr7:30017465-30017270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chr7:58800217-58800423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:1083-1290
               
               
               Cow position:chr7:39514281-39514491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1083-1290
               
               
               Cow position:chr7:39516469-39516259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr7:3304625-3304836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 97

               
               
               Conread position:1083-1296
               
               
               Cow position:chr7:25393351-25393561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:1083-1296
               
               
               Cow position:chr7:68173115-68172898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 207

               
               
               Conread position:1084-1275
               
               
               Cow position:chr7:10945396-10945589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 91

               
               
               Conread position:1084-1276
               
               
               Cow position:chr7:25263417-25263610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 142

               
               
               Conread position:1084-1282
               
               
               Cow position:chr7:28441227-28441421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1084-1284
               
               
               Cow position:chr7:18508488-18508296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):193, 22

               
               
               Conread position:1084-1288
               
               
               Cow position:chr7:32260147-32259945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:1084-1288
               
               
               Cow position:chr7:51685063-51685267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 72

               
               
               Conread position:1084-1289
               
               
               Cow position:chr7:32900630-32900840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1084-1296
               
               
               Cow position:chr7:36534073-36534284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:1084-1296
               
               
               Cow position:chr7:46952081-46952295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:1085-1277
               
               
               Cow position:chr7:23671802-23671994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):117, 93

               
               
               Conread position:1085-1283
               
               
               Cow position:chr7:29479578-29479768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1085-1283
               
               
               Cow position:chr7:40414947-40414756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1087-1278
               
               
               Cow position:chr7:23818945-23819134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:1088-1283
               
               
               Cow position:chr7:17000779-17000976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1088-1283
               
               
               Cow position:chr7:48508499-48508697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:1088-1285
               
               
               Cow position:chr7:40311008-40310812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 6

               
               
               Conread position:1088-1296
               
               
               Cow position:chr7:35096972-35096762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 67

               
               
               Conread position:1089-1273
               
               
               Cow position:chr7:6801834-6802016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:1089-1285
               
               
               Cow position:chr7:58967321-58967521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 76

               
               
               Conread position:1089-1295
               
               
               Cow position:chr7:67873247-67873455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 67

               
               
               Conread position:1090-1283
               
               
               Cow position:chr7:54712476-54712663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1090-1287
               
               
               Cow position:chr7:10438383-10438580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):184, 88

               
               
               Conread position:1090-1288
               
               
               Cow position:chr7:53834536-53834336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1091-1296
               
               
               Cow position:chr7:9173814-9174023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:1092-1284
               
               
               Cow position:chr7:38458433-38458633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:1092-1296
               
               
               Cow position:chr7:9068543-9068333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 79

               
               
               Conread position:1093-1285
               
               
               Cow position:chr7:18958482-18958291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:1093-1292
               
               
               Cow position:chr7:27290441-27290237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1094-1295
               
               
               Cow position:chr7:46191900-46191701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1096-1288
               
               
               Cow position:chr7:19329247-19329057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1097-1295
               
               
               Cow position:chr7:18856927-18856727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:1099-1277
               
               
               Cow position:chr7:51621460-51621632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:1099-1288
               
               
               Cow position:chr7:14191682-14191493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:1099-1295
               
               
               Cow position:chr7:30154942-30154747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):177, 66

               
               
               Conread position:1101-1266
               
               
               Cow position:chr7:37394364-37394529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):99, 77

               
               
               Conread position:1101-1283
               
               
               Cow position:chr7:32762349-32762163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:1102-1279
               
               
               Cow position:chr7:11511791-11511962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1103-1265
               
               
               Cow position:chr7:8032511-8032671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):135, 77

               
               
               Conread position:1103-1286
               
               
               Cow position:chr7:31885661-31885845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:1103-1296
               
               
               Cow position:chr7:5914299-5914490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1106-1296
               
               
               Cow position:chr7:34216280-34216461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1107-1277
               
               
               Cow position:chr7:20936554-20936385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):136, 79

               
               
               Conread position:1107-1295
               
               
               Cow position:chr7:44942629-44942817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):169, 57

               
               
               Conread position:1108-1291
               
               
               Cow position:chr7:65695234-65695053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1109-1288
               
               
               Cow position:chr7:23255828-23256005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):160, 70

               
               
               Conread position:1115-1290
               
               
               Cow position:chr7:35793155-35793333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 137

               
               
               Conread position:1117-1257
               
               
               Cow position:chr7:23823417-23823277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):86, 68

               
               
               Conread position:1117-1273
               
               
               Cow position:chr7:10441886-10441732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr7:20181116-20180949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr7:39988816-39988985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1121-1283
               
               
               Cow position:chr7:48020514-48020672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1123-1289
               
               
               Cow position:chr7:1763512-1763670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1133-1283
               
               
               Cow position:chr7:30290847-30290696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:1138-1296
               
               
               Cow position:chr7:24736687-24736841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1009-1289
               
               
               Cow position:chr8:47057722-47057441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:1040-1288
               
               
               Cow position:chr8:53762102-53762357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 130

               
               
               Conread position:1050-1296
               
               
               Cow position:chr8:52197474-52197226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:1051-1276
               
               
               Cow position:chr8:37391374-37391149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:1053-1295
               
               
               Cow position:chr8:46799297-46799051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 134

               
               
               Conread position:1056-1288
               
               
               Cow position:chr8:42762441-42762216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1056-1296
               
               
               Cow position:chr8:834409-834641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1056-1296
               
               
               Cow position:chr8:37672025-37672274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):117, 230

               
               
               Conread position:1057-1278
               
               
               Cow position:chr8:19784846-19785069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:1060-1296
               
               
               Cow position:chr8:21940833-21940593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:1061-1269
               
               
               Cow position:chr8:35583563-35583373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1061-1282
               
               
               Cow position:chr8:43439607-43439822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):137, 56

               
               
               Conread position:1061-1296
               
               
               Cow position:chr8:27955158-27954923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:1063-1280
               
               
               Cow position:chr8:38711591-38711800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1063-1288
               
               
               Cow position:chr8:2376024-2375797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):106, 101

               
               
               Conread position:1066-1283
               
               
               Cow position:chr8:48645462-48645683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:1067-1176
               
               
               Cow position:chr8:6484930-6484821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1067-1278
               
               
               Cow position:chr8:10970835-10971046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr8:34820317-34820098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 99

               
               
               Conread position:1067-1288
               
               
               Cow position:chr8:40280688-40280908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:1067-1288
               
               
               Cow position:chr8:46235699-46235926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:1067-1288
               
               
               Cow position:chr8:46964736-46964961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 98

               
               
               Conread position:1067-1288
               
               
               Cow position:chr8:53338662-53338443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1067-1289
               
               
               Cow position:chr8:36879345-36879574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 6

               
               
               Conread position:1067-1295
               
               
               Cow position:chr8:35971851-35972076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):176, 73

               
               
               Conread position:1067-1295
               
               
               Cow position:chr8:51581147-51580915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 99

               
               
               Conread position:1067-1296
               
               
               Cow position:chr8:20783261-20783031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 22

               
               
               Conread position:1067-1296
               
               
               Cow position:chr8:38416128-38415895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):107, 99

               
               
               Conread position:1067-1296
               
               
               Cow position:chr8:41888383-41888601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1296
               
               
               Cow position:chr8:55089848-55089631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1296
               
               
               Cow position:chr8:59553786-59553554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):107, 97

               
               
               Conread position:1068-1210
               
               
               Cow position:chr8:17167572-17167712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chr8:43153688-43153548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1248
               
               
               Cow position:chr8:35580633-35580455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr8:3015483-3015679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr8:6073813-6073622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):175, 15

               
               
               Conread position:1068-1265
               
               
               Cow position:chr8:20320491-20320684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1068-1268
               
               
               Cow position:chr8:61567374-61567171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:1068-1276
               
               
               Cow position:chr8:32130234-32130440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1276
               
               
               Cow position:chr8:33406845-33406646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:1068-1277
               
               
               Cow position:chr8:10081907-10082095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr8:24867740-24867537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):136, 160

               
               
               Conread position:1068-1278
               
               
               Cow position:chr8:6224432-6224230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):201, 47

               
               
               Conread position:1068-1278
               
               
               Cow position:chr8:12214009-12214210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr8:39807601-39807812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr8:48555654-48555450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr8:19616318-19616520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):200, 47

               
               
               Conread position:1068-1281
               
               
               Cow position:chr8:55716757-55716966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):199, 47

               
               
               Conread position:1068-1282
               
               
               Cow position:chr8:61157228-61157016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:4500494-4500704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:10262110-10261895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):208, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:16957624-16957827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:18290120-18289901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:20033917-20033701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:28086158-28086380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:29030084-29029861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:32047068-32047290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:34769500-34769715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:47410084-47410299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):201, 106

               
               
               Conread position:1068-1283
               
               
               Cow position:chr8:58393564-58393774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1285
               
               
               Cow position:chr8:8190062-8189841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:1068-1285
               
               
               Cow position:chr8:12058727-12058943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):99, 57

               
               
               Conread position:1068-1285
               
               
               Cow position:chr8:55897812-55897600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:1068-1287
               
               
               Cow position:chr8:37559134-37559345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):211, 89

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:1303910-1304129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:9655578-9655795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:18091325-18091549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):111, 98

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:19284505-19284720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):144, 5

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:24371712-24371493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 62

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:33640367-33640585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):200, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:34799688-34799911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:37635992-37635774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):210, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:38572264-38572050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:44449601-44449386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:46082171-46082384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:55194175-55194394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):145, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr8:55247588-55247373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:1068-1289
               
               
               Cow position:chr8:23018508-23018294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):142, 14

               
               
               Conread position:1068-1290
               
               
               Cow position:chr8:10337036-10336820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1290
               
               
               Cow position:chr8:60339917-60339705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1068-1291
               
               
               Cow position:chr8:55884975-55885195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1068-1293
               
               
               Cow position:chr8:26008883-26009110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:1068-1293
               
               
               Cow position:chr8:47169946-47170171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 110

               
               
               Conread position:1068-1294
               
               
               Cow position:chr8:1666073-1665846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1294
               
               
               Cow position:chr8:9811227-9811458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1294
               
               
               Cow position:chr8:36531603-36531373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):133, 118

               
               
               Conread position:1068-1296
               
               
               Cow position:chr8:2482107-2482333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:1068-1296
               
               
               Cow position:chr8:4992555-4992780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):126, 62

               
               
               Conread position:1068-1296
               
               
               Cow position:chr8:20327848-20327621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):124, 99

               
               
               Conread position:1068-1296
               
               
               Cow position:chr8:37167745-37167971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chr8:39181767-39181545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 82

               
               
               Conread position:1068-1296
               
               
               Cow position:chr8:54052310-54052524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1069-1258
               
               
               Cow position:chr8:32278345-32278154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1069-1261
               
               
               Cow position:chr8:1999632-1999826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):130, 95

               
               
               Conread position:1069-1261
               
               
               Cow position:chr8:34060159-34059968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1069-1275
               
               
               Cow position:chr8:52657165-52657367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1069-1276
               
               
               Cow position:chr8:26284853-26284645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):7, 157

               
               
               Conread position:1069-1276
               
               
               Cow position:chr8:53746573-53746363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 118

               
               
               Conread position:1069-1276
               
               
               Cow position:chr8:59250731-59250933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:1069-1278
               
               
               Cow position:chr8:5437767-5437972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:1069-1278
               
               
               Cow position:chr8:28229471-28229265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1069-1279
               
               
               Cow position:chr8:37571701-37571491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 95

               
               
               Conread position:1069-1283
               
               
               Cow position:chr8:7204752-7204536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:1069-1284
               
               
               Cow position:chr8:32133272-32133481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1069-1285
               
               
               Cow position:chr8:1297513-1297728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):86, 175

               
               
               Conread position:1069-1285
               
               
               Cow position:chr8:43940896-43940679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1069-1287
               
               
               Cow position:chr8:38894015-38894239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):122, 182

               
               
               Conread position:1069-1288
               
               
               Cow position:chr8:19980077-19979864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):116, 141

               
               
               Conread position:1069-1288
               
               
               Cow position:chr8:24905468-24905698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 223

               
               
               Conread position:1069-1288
               
               
               Cow position:chr8:38843624-38843404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:1069-1288
               
               
               Cow position:chr8:54061901-54062118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):144, 110

               
               
               Conread position:1069-1290
               
               
               Cow position:chr8:3887335-3887554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 109

               
               
               Conread position:1069-1294
               
               
               Cow position:chr8:17199430-17199202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 124

               
               
               Conread position:1069-1296
               
               
               Cow position:chr8:3914594-3914825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):106, 102

               
               
               Conread position:1069-1296
               
               
               Cow position:chr8:5468088-5467856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:1069-1296
               
               
               Cow position:chr8:5477849-5477624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:1069-1296
               
               
               Cow position:chr8:19475080-19474851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):148, 95

               
               
               Conread position:1069-1296
               
               
               Cow position:chr8:20212499-20212268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:1069-1296
               
               
               Cow position:chr8:24406638-24406412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):98, 105

               
               
               Conread position:1069-1296
               
               
               Cow position:chr8:39066223-39066460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:1069-1296
               
               
               Cow position:chr8:55070720-55070941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:1069-1296
               
               
               Cow position:chr8:58058746-58058971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):210, 113

               
               
               Conread position:1070-1201
               
               
               Cow position:chr8:4924572-4924703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:1070-1257
               
               
               Cow position:chr8:59766603-59766784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1070-1261
               
               
               Cow position:chr8:10456471-10456656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1275
               
               
               Cow position:chr8:42794318-42794105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1070-1277
               
               
               Cow position:chr8:20107787-20107584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1070-1277
               
               
               Cow position:chr8:49305745-49305538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 26

               
               
               Conread position:1070-1277
               
               
               Cow position:chr8:53587313-53587113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):162, 45

               
               
               Conread position:1070-1279
               
               
               Cow position:chr8:19642472-19642679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 111

               
               
               Conread position:1070-1281
               
               
               Cow position:chr8:20911073-20910862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):121, 178

               
               
               Conread position:1070-1294
               
               
               Cow position:chr8:31985267-31985484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):60, 99

               
               
               Conread position:1070-1296
               
               
               Cow position:chr8:27731041-27731268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 93

               
               
               Conread position:1070-1296
               
               
               Cow position:chr8:43112842-43112621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):199, 109

               
               
               Conread position:1070-1296
               
               
               Cow position:chr8:55502589-55502805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):168, 105

               
               
               Conread position:1071-1283
               
               
               Cow position:chr8:4796766-4796964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):204, 44

               
               
               Conread position:1071-1289
               
               
               Cow position:chr8:28321973-28322197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 19

               
               
               Conread position:1073-1283
               
               
               Cow position:chr8:18728794-18728999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):196, 58

               
               
               Conread position:1073-1288
               
               
               Cow position:chr8:58636749-58636953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):196, 79

               
               
               Conread position:1074-1283
               
               
               Cow position:chr8:11863958-11864167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 90

               
               
               Conread position:1075-1288
               
               
               Cow position:chr8:8714803-8715010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1075-1296
               
               
               Cow position:chr8:24419268-24419057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):206, 96

               
               
               Conread position:1076-1296
               
               
               Cow position:chr8:12520386-12520163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):5, 110

               
               
               Conread position:1078-1283
               
               
               Cow position:chr8:6675209-6675410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1078-1296
               
               
               Cow position:chr8:20926619-20926394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1079-1278
               
               
               Cow position:chr8:29934054-29934256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 90

               
               
               Conread position:1079-1287
               
               
               Cow position:chr8:32620970-32620758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):91, 86

               
               
               Conread position:1080-1265
               
               
               Cow position:chr8:41219342-41219527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chr8:48527952-48527748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:1080-1296
               
               
               Cow position:chr8:6333358-6333578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:1080-1296
               
               
               Cow position:chr8:36375502-36375290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):194, 102

               
               
               Conread position:1082-1278
               
               
               Cow position:chr8:47342754-47342950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:1082-1280
               
               
               Cow position:chr8:26305850-26305650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:1082-1283
               
               
               Cow position:chr8:2289075-2288871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr8:3056856-3057060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chr8:4203838-4203634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr8:21222644-21222848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):107, 85

               
               
               Conread position:1082-1283
               
               
               Cow position:chr8:26632752-26632548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 117

               
               
               Conread position:1082-1284
               
               
               Cow position:chr8:38874575-38874365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):104, 186

               
               
               Conread position:1082-1295
               
               
               Cow position:chr8:38358430-38358650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:1082-1296
               
               
               Cow position:chr8:3579130-3578912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:1082-1296
               
               
               Cow position:chr8:21220169-21220384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 89

               
               
               Conread position:1083-1272
               
               
               Cow position:chr8:3423022-3423211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:1083-1273
               
               
               Cow position:chr8:25640084-25639899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1083-1277
               
               
               Cow position:chr8:28209999-28210196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 102

               
               
               Conread position:1083-1279
               
               
               Cow position:chr8:11216838-11216646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 78

               
               
               Conread position:1083-1288
               
               
               Cow position:chr8:41722170-41721970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:1083-1294
               
               
               Cow position:chr8:38852105-38852320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 76

               
               
               Conread position:1083-1295
               
               
               Cow position:chr8:39426194-39426407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:1083-1296
               
               
               Cow position:chr8:21826718-21826510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):193, 47

               
               
               Conread position:1083-1296
               
               
               Cow position:chr8:39350771-39350554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 84

               
               
               Conread position:1083-1296
               
               
               Cow position:chr8:54546608-54546828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:1083-1296
               
               
               Cow position:chr8:55725751-55725538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:1084-1286
               
               
               Cow position:chr8:34035695-34035892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1084-1288
               
               
               Cow position:chr8:37148327-37148534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):5, 81

               
               
               Conread position:1084-1295
               
               
               Cow position:chr8:8323852-8323641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):98, 81

               
               
               Conread position:1084-1296
               
               
               Cow position:chr8:5665676-5665459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 72

               
               
               Conread position:1084-1296
               
               
               Cow position:chr8:21600464-21600683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1085-1279
               
               
               Cow position:chr8:52772952-52773146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:1085-1293
               
               
               Cow position:chr8:61848708-61848498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):120, 93

               
               
               Conread position:1086-1288
               
               
               Cow position:chr8:35452594-35452793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1086-1296
               
               
               Cow position:chr8:30868709-30868500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:1088-1279
               
               
               Cow position:chr8:27138773-27138586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 82

               
               
               Conread position:1089-1282
               
               
               Cow position:chr8:50682126-50682316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:1089-1288
               
               
               Cow position:chr8:29173232-29173428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:1090-1276
               
               
               Cow position:chr8:16216083-16216268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):65, 81

               
               
               Conread position:1090-1288
               
               
               Cow position:chr8:31902664-31902469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):7, 77

               
               
               Conread position:1093-1286
               
               
               Cow position:chr8:47679539-47679724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1093-1296
               
               
               Cow position:chr8:690253-690050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):174, 72

               
               
               Conread position:1094-1261
               
               
               Cow position:chr8:3793180-3793347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 84

               
               
               Conread position:1094-1288
               
               
               Cow position:chr8:54306383-54306574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:1094-1296
               
               
               Cow position:chr8:28506915-28506726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):182, 23

               
               
               Conread position:1096-1288
               
               
               Cow position:chr8:9814923-9815114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:1096-1296
               
               
               Cow position:chr8:6006081-6005878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:1099-1276
               
               
               Cow position:chr8:6160810-6160982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:1099-1296
               
               
               Cow position:chr8:36034935-36034737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):105, 89

               
               
               Conread position:1101-1285
               
               
               Cow position:chr8:47707479-47707302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):178, 64

               
               
               Conread position:1102-1288
               
               
               Cow position:chr8:46479847-46479662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):53, 73

               
               
               Conread position:1102-1296
               
               
               Cow position:chr8:10832398-10832199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):101, 62

               
               
               Conread position:1103-1274
               
               
               Cow position:chr8:16144167-16144340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):64, 72

               
               
               Conread position:1103-1283
               
               
               Cow position:chr8:53880609-53880427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:1104-1261
               
               
               Cow position:chr8:35936803-35936956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1107-1285
               
               
               Cow position:chr8:11124525-11124348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 57

               
               
               Conread position:1107-1295
               
               
               Cow position:chr8:13922679-13922871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:1110-1288
               
               
               Cow position:chr8:39968238-39968059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:1117-1283
               
               
               Cow position:chr8:36385508-36385344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1283
               
               
               Cow position:chr8:46616438-46616601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1287
               
               
               Cow position:chr8:5730083-5730249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1287
               
               
               Cow position:chr8:16053744-16053910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1117-1295
               
               
               Cow position:chr8:16061119-16061300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):75, 172

               
               
               Conread position:1117-1296
               
               
               Cow position:chr8:31767984-31767813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1119-1277
               
               
               Cow position:chr8:51501233-51501077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1050-1283
               
               
               Cow position:chr9:48730487-48730251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:1051-1288
               
               
               Cow position:chr9:42586504-42586730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):228, 15

               
               
               Conread position:1057-1283
               
               
               Cow position:chr9:8613162-8613389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):77, 120

               
               
               Conread position:1060-1277
               
               
               Cow position:chr9:12773734-12773524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1060-1289
               
               
               Cow position:chr9:12129353-12129127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:1061-1290
               
               
               Cow position:chr9:11123440-11123663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1061-1295
               
               
               Cow position:chr9:8992134-8992369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):121, 103

               
               
               Conread position:1065-1296
               
               
               Cow position:chr9:41644709-41644945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):133, 96

               
               
               Conread position:1067-1277
               
               
               Cow position:chr9:56453375-56453176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1067-1279
               
               
               Cow position:chr9:57131534-57131326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1282
               
               
               Cow position:chr9:26344929-26345137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1067-1283
               
               
               Cow position:chr9:36628157-36627947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1293
               
               
               Cow position:chr9:26394314-26394534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1067-1296
               
               
               Cow position:chr9:33584646-33584875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):215, 111

               
               
               Conread position:1068-1203
               
               
               Cow position:chr9:7634309-7634176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chr9:8562858-8562720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chr9:55354649-55354509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1247
               
               
               Cow position:chr9:33119850-33120031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:1068-1261
               
               
               Cow position:chr9:29194986-29195186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1068-1262
               
               
               Cow position:chr9:29006595-29006404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr9:22165675-22165875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1265
               
               
               Cow position:chr9:34958018-34958210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr9:41785248-41785051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chr9:52267720-52267932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:1068-1277
               
               
               Cow position:chr9:56032277-56032487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):92, 98

               
               
               Conread position:1068-1278
               
               
               Cow position:chr9:11098418-11098622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr9:12337940-12337729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr9:33151780-33151578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1278
               
               
               Cow position:chr9:55256514-55256720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1068-1279
               
               
               Cow position:chr9:43757579-43757372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:1068-1279
               
               
               Cow position:chr9:45285497-45285711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr9:24887244-24887031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1068-1281
               
               
               Cow position:chr9:41283053-41282838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chr9:13670672-13670460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:1068-1282
               
               
               Cow position:chr9:37199165-37198952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):141, 110

               
               
               Conread position:1068-1282
               
               
               Cow position:chr9:59997998-59998204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):201, 47

               
               
               Conread position:1068-1282
               
               
               Cow position:chr9:63361681-63361886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:4341121-4341332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:9311896-9311682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):208, 97

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:9460019-9459813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:9552128-9551911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):186, 114

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:9595912-9596126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:20318534-20318751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 102

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:22440444-22440650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:33218917-33219131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):133, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:34283991-34283781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):137, 110

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:36490860-36491080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:52689573-52689791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chr9:55795793-55795582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1284
               
               
               Cow position:chr9:30012911-30012693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1285
               
               
               Cow position:chr9:4241444-4241230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):90, 119

               
               
               Conread position:1068-1285
               
               
               Cow position:chr9:61303038-61302826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1068-1287
               
               
               Cow position:chr9:48628066-48627844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):141, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chr9:23955942-23956158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr9:39011431-39011646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chr9:59013304-59013518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):146, 46

               
               
               Conread position:1068-1288
               
               
               Cow position:chr9:59699509-59699733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 182

               
               
               Conread position:1068-1289
               
               
               Cow position:chr9:6338831-6338608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:1068-1289
               
               
               Cow position:chr9:47590943-47591169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1292
               
               
               Cow position:chr9:15805885-15806113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:1068-1294
               
               
               Cow position:chr9:26279131-26279359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 205

               
               
               Conread position:1068-1294
               
               
               Cow position:chr9:54411120-54411353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:1068-1295
               
               
               Cow position:chr9:53762734-53762511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:1068-1296
               
               
               Cow position:chr9:5327296-5327072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):212, 114

               
               
               Conread position:1068-1296
               
               
               Cow position:chr9:28747482-28747705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr9:31346987-31346757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):210, 34

               
               
               Conread position:1068-1296
               
               
               Cow position:chr9:32387946-32388175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):92, 133

               
               
               Conread position:1068-1296
               
               
               Cow position:chr9:34286837-34286611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr9:45141562-45141785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chr9:58131915-58132139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):206, 89

               
               
               Conread position:1069-1210
               
               
               Cow position:chr9:4267944-4268086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1069-1260
               
               
               Cow position:chr9:54493172-54492985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1069-1264
               
               
               Cow position:chr9:64105936-64105746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1069-1266
               
               
               Cow position:chr9:33823155-33822958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):105, 182

               
               
               Conread position:1069-1277
               
               
               Cow position:chr9:13743893-13744104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):122, 86

               
               
               Conread position:1069-1277
               
               
               Cow position:chr9:52518785-52518991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:1069-1280
               
               
               Cow position:chr9:8628881-8629085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr9:5104366-5104586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):122, 58

               
               
               Conread position:1069-1283
               
               
               Cow position:chr9:5342211-5342422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chr9:17799663-17799460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 83

               
               
               Conread position:1069-1283
               
               
               Cow position:chr9:41416370-41416153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 111

               
               
               Conread position:1069-1285
               
               
               Cow position:chr9:28726687-28726906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 205

               
               
               Conread position:1069-1287
               
               
               Cow position:chr9:52763723-52763934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):206, 95

               
               
               Conread position:1069-1288
               
               
               Cow position:chr9:6189328-6189543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chr9:18380899-18380686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):214, 46

               
               
               Conread position:1069-1288
               
               
               Cow position:chr9:21292370-21292588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:1069-1291
               
               
               Cow position:chr9:34410359-34410577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1069-1294
               
               
               Cow position:chr9:9723842-9724067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:1069-1295
               
               
               Cow position:chr9:9686377-9686607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:1069-1296
               
               
               Cow position:chr9:6397746-6397974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:1069-1296
               
               
               Cow position:chr9:6954212-6954442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:1070-1265
               
               
               Cow position:chr9:52578502-52578696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):112, 89

               
               
               Conread position:1070-1276
               
               
               Cow position:chr9:17872074-17872276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1070-1279
               
               
               Cow position:chr9:21460118-21460325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:1070-1283
               
               
               Cow position:chr9:8636703-8636502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1070-1287
               
               
               Cow position:chr9:41728294-41728080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1070-1288
               
               
               Cow position:chr9:53109286-53109069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):106, 42

               
               
               Conread position:1070-1288
               
               
               Cow position:chr9:60395012-60395230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1070-1295
               
               
               Cow position:chr9:37950862-37951089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:1070-1296
               
               
               Cow position:chr9:14974883-14975122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 39

               
               
               Conread position:1070-1296
               
               
               Cow position:chr9:38793052-38792828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 119

               
               
               Conread position:1071-1283
               
               
               Cow position:chr9:51620477-51620268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):142, 44

               
               
               Conread position:1071-1286
               
               
               Cow position:chr9:6192424-6192636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):53, 108

               
               
               Conread position:1071-1296
               
               
               Cow position:chr9:43202369-43202148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1072-1296
               
               
               Cow position:chr9:7543227-7543446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:1072-1296
               
               
               Cow position:chr9:11380611-11380836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:1074-1278
               
               
               Cow position:chr9:17840646-17840850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1075-1273
               
               
               Cow position:chr9:43159784-43159589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:1075-1276
               
               
               Cow position:chr9:44758900-44759096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:1075-1282
               
               
               Cow position:chr9:45484142-45483933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 92

               
               
               Conread position:1075-1287
               
               
               Cow position:chr9:5263529-5263322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):200, 45

               
               
               Conread position:1080-1210
               
               
               Cow position:chr9:6293621-6293492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1080-1265
               
               
               Cow position:chr9:44944452-44944631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1080-1275
               
               
               Cow position:chr9:34707286-34707479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):186, 60

               
               
               Conread position:1080-1277
               
               
               Cow position:chr9:27345558-27345759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1080-1282
               
               
               Cow position:chr9:42508858-42508653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:1080-1284
               
               
               Cow position:chr9:32815678-32815474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):94, 82

               
               
               Conread position:1080-1285
               
               
               Cow position:chr9:34374898-34375105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1080-1296
               
               
               Cow position:chr9:12910375-12910587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:1080-1296
               
               
               Cow position:chr9:13169637-13169853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 98

               
               
               Conread position:1082-1264
               
               
               Cow position:chr9:17740918-17741096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chr9:35547292-35547088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:1083-1258
               
               
               Cow position:chr9:20637396-20637224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1083-1277
               
               
               Cow position:chr9:40603691-40603497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1083-1279
               
               
               Cow position:chr9:151891-151694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:1083-1281
               
               
               Cow position:chr9:31359628-31359430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:1083-1283
               
               
               Cow position:chr9:59586334-59586138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):143, 82

               
               
               Conread position:1083-1288
               
               
               Cow position:chr9:14738272-14738071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chr9:8998372-8998162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 82

               
               
               Conread position:1083-1296
               
               
               Cow position:chr9:41470075-41470289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 81

               
               
               Conread position:1083-1296
               
               
               Cow position:chr9:43680143-43679932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):206, 88

               
               
               Conread position:1084-1283
               
               
               Cow position:chr9:36458021-36457820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):115, 87

               
               
               Conread position:1084-1285
               
               
               Cow position:chr9:15215665-15215868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 28

               
               
               Conread position:1084-1296
               
               
               Cow position:chr9:5186845-5187048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1084-1296
               
               
               Cow position:chr9:13993787-13993573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):113, 81

               
               
               Conread position:1084-1296
               
               
               Cow position:chr9:35295712-35295505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):192, 110

               
               
               Conread position:1085-1265
               
               
               Cow position:chr9:64310758-64310937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:1085-1283
               
               
               Cow position:chr9:59897610-59897420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1085-1288
               
               
               Cow position:chr9:26477237-26477029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):113, 80

               
               
               Conread position:1086-1265
               
               
               Cow position:chr9:1712686-1712866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 97

               
               
               Conread position:1086-1288
               
               
               Cow position:chr9:19718320-19718515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1086-1293
               
               
               Cow position:chr9:34024719-34024514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):119, 92

               
               
               Conread position:1086-1296
               
               
               Cow position:chr9:23840374-23840593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 204

               
               
               Conread position:1087-1296
               
               
               Cow position:chr9:24079321-24079112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):182, 99

               
               
               Conread position:1088-1265
               
               
               Cow position:chr9:52998362-52998536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1088-1278
               
               
               Cow position:chr9:40984523-40984333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):125, 91

               
               
               Conread position:1088-1282
               
               
               Cow position:chr9:55807649-55807459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1089-1289
               
               
               Cow position:chr9:5068858-5068654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1089-1293
               
               
               Cow position:chr9:32052293-32052088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):142, 97

               
               
               Conread position:1090-1266
               
               
               Cow position:chr9:32773229-32773063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1090-1288
               
               
               Cow position:chr9:19771378-19771179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):162, 151

               
               
               Conread position:1090-1296
               
               
               Cow position:chr9:32662015-32662226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1093-1288
               
               
               Cow position:chr9:17027210-17027013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):156, 72

               
               
               Conread position:1093-1291
               
               
               Cow position:chr9:12786460-12786659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 24

               
               
               Conread position:1094-1288
               
               
               Cow position:chr9:8834115-8834312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 70

               
               
               Conread position:1094-1295
               
               
               Cow position:chr9:28315441-28315238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 81

               
               
               Conread position:1096-1296
               
               
               Cow position:chr9:48900826-48901026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 148

               
               
               Conread position:1099-1279
               
               
               Cow position:chr9:61022630-61022447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1099-1283
               
               
               Cow position:chr9:34423629-34423442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:1100-1268
               
               
               Cow position:chr9:30123932-30123769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):113, 15

               
               
               Conread position:1101-1296
               
               
               Cow position:chr9:61300972-61301168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):173, 87

               
               
               Conread position:1102-1285
               
               
               Cow position:chr9:33101111-33101282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1103-1278
               
               
               Cow position:chr9:34666444-34666281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1104-1288
               
               
               Cow position:chr9:44918279-44918457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):137, 8

               
               
               Conread position:1104-1296
               
               
               Cow position:chr9:55013330-55013533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:1106-1288
               
               
               Cow position:chr9:26388208-26388035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1106-1288
               
               
               Cow position:chr9:34760364-34760548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 69

               
               
               Conread position:1106-1296
               
               
               Cow position:chr9:61019362-61019554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:1107-1295
               
               
               Cow position:chr9:11447809-11447997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):168, 65

               
               
               Conread position:1116-1287
               
               
               Cow position:chr9:9495146-9494979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1117-1279
               
               
               Cow position:chr9:28773128-28772969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1117-1281
               
               
               Cow position:chr9:2037430-2037262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1117-1282
               
               
               Cow position:chr9:12269019-12268860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1117-1288
               
               
               Cow position:chr9:53323795-53323968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 62

               
               
               Conread position:1118-1287
               
               
               Cow position:chr9:1917967-1917801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):160, 60

               
               
               Conread position:1121-1279
               
               
               Cow position:chr9:52754865-52755024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:1123-1283
               
               
               Cow position:chr9:8537291-8537130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:1124-1296
               
               
               Cow position:chr9:30194993-30194822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 65

               
               
               Conread position:1135-1296
               
               
               Cow position:chr9:6237522-6237681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):147, 44

               
               
               Conread position:1140-1288
               
               
               Cow position:chr9:21816497-21816350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1141-1282
               
               
               Cow position:chr9:9516788-9516922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:1032-1296
               
               
               Cow position:chrX:35658776-35659042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:1051-1291
               
               
               Cow position:chrX:42247181-42246941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):148, 120

               
               
               Conread position:1055-1296
               
               
               Cow position:chrX:36109611-36109364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):111, 148

               
               
               Conread position:1061-1274
               
               
               Cow position:chrX:19761765-19761974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1061-1278
               
               
               Cow position:chrX:8493076-8493295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:1061-1294
               
               
               Cow position:chrX:46587833-46588067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):137, 110

               
               
               Conread position:1061-1295
               
               
               Cow position:chrX:16984653-16984882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):218, 12

               
               
               Conread position:1061-1295
               
               
               Cow position:chrX:29601817-29601583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1061-1296
               
               
               Cow position:chrX:9635179-9634945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):126, 51

               
               
               Conread position:1061-1296
               
               
               Cow position:chrX:44090932-44091171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:1063-1288
               
               
               Cow position:chrX:41453315-41453538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):154, 115

               
               
               Conread position:1067-1211
               
               
               Cow position:chrX:34508561-34508703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1067-1275
               
               
               Cow position:chrX:42836198-42836407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:1067-1278
               
               
               Cow position:chrX:14883939-14883728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):80, 99

               
               
               Conread position:1067-1283
               
               
               Cow position:chrX:1466179-1466400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):165, 121

               
               
               Conread position:1067-1283
               
               
               Cow position:chrX:22482680-22482455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:1067-1283
               
               
               Cow position:chrX:37781092-37780877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):201, 121

               
               
               Conread position:1067-1287
               
               
               Cow position:chrX:4289459-4289671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:1067-1296
               
               
               Cow position:chrX:35885710-35885484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):214, 98

               
               
               Conread position:1068-1210
               
               
               Cow position:chrX:169526-169388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1068-1210
               
               
               Cow position:chrX:40269509-40269652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1068-1211
               
               
               Cow position:chrX:878362-878221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1240
               
               
               Cow position:chrX:4515703-4515879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:1068-1248
               
               
               Cow position:chrX:14275725-14275549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chrX:17794999-17795203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chrX:22074814-22075019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):55, 114

               
               
               Conread position:1068-1273
               
               
               Cow position:chrX:38642267-38642466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1068-1273
               
               
               Cow position:chrX:40685310-40685106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):141, 110

               
               
               Conread position:1068-1274
               
               
               Cow position:chrX:10516271-10516479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chrX:9201566-9201771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):175, 110

               
               
               Conread position:1068-1277
               
               
               Cow position:chrX:22115299-22115086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1068-1277
               
               
               Cow position:chrX:31479989-31480194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):106, 57

               
               
               Conread position:1068-1278
               
               
               Cow position:chrX:4559757-4559963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):124, 28

               
               
               Conread position:1068-1278
               
               
               Cow position:chrX:9252145-9251934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):132, 120

               
               
               Conread position:1068-1278
               
               
               Cow position:chrX:27668940-27668733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):150, 110

               
               
               Conread position:1068-1278
               
               
               Cow position:chrX:38218732-38218942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:1068-1279
               
               
               Cow position:chrX:4399144-4399348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 5

               
               
               Conread position:1068-1279
               
               
               Cow position:chrX:25464095-25463882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1281
               
               
               Cow position:chrX:40826733-40826517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 102

               
               
               Conread position:1068-1282
               
               
               Cow position:chrX:26881547-26881327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):106, 169

               
               
               Conread position:1068-1282
               
               
               Cow position:chrX:29467760-29467549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chrX:33855201-33854993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1068-1282
               
               
               Cow position:chrX:41871085-41871290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chrX:4466985-4467185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chrX:6414065-6414266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1283
               
               
               Cow position:chrX:21642464-21642246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1283
               
               
               Cow position:chrX:33000923-33001133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 56

               
               
               Conread position:1068-1283
               
               
               Cow position:chrX:40183336-40183120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:1068-1283
               
               
               Cow position:chrX:40320424-40320641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1283
               
               
               Cow position:chrX:45976944-45977158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):138, 112

               
               
               Conread position:1068-1285
               
               
               Cow position:chrX:2935975-2936189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chrX:5118484-5118258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:1068-1288
               
               
               Cow position:chrX:11326079-11325871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chrX:11656099-11656319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):207, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chrX:31948917-31948692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1068-1288
               
               
               Cow position:chrX:35985838-35986053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:1068-1288
               
               
               Cow position:chrX:42449996-42449772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:1068-1288
               
               
               Cow position:chrX:42927806-42927590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):200, 110

               
               
               Conread position:1068-1288
               
               
               Cow position:chrX:43008627-43008852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 97

               
               
               Conread position:1068-1290
               
               
               Cow position:chrX:22392966-22392747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1293
               
               
               Cow position:chrX:19469488-19469275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1068-1295
               
               
               Cow position:chrX:12972699-12972923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:1068-1295
               
               
               Cow position:chrX:47854999-47855223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:1088122-1087902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:3806700-3806926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 96

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:9651006-9650780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:17292973-17293202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):106, 98

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:18111396-18111627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:27145622-27145844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:34411864-34412094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):124, 210

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:41878911-41878689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:47345345-47345580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 230

               
               
               Conread position:1068-1296
               
               
               Cow position:chrX:48071179-48071413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):107, 98

               
               
               Conread position:1069-1258
               
               
               Cow position:chrX:31294553-31294360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1069-1274
               
               
               Cow position:chrX:4328164-4327957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 115

               
               
               Conread position:1069-1277
               
               
               Cow position:chrX:44054821-44055031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 95

               
               
               Conread position:1069-1278
               
               
               Cow position:chrX:36866192-36866402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1069-1282
               
               
               Cow position:chrX:29230018-29230240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1069-1282
               
               
               Cow position:chrX:33654825-33654609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):106, 116

               
               
               Conread position:1069-1283
               
               
               Cow position:chrX:6544276-6544479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chrX:6599763-6599540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:1069-1283
               
               
               Cow position:chrX:28940261-28940478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1069-1285
               
               
               Cow position:chrX:20957257-20957472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):121, 200

               
               
               Conread position:1069-1287
               
               
               Cow position:chrX:29542198-29541991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chrX:4632839-4632615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chrX:12290738-12290959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 113

               
               
               Conread position:1069-1288
               
               
               Cow position:chrX:12437251-12437042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):215, 48

               
               
               Conread position:1069-1288
               
               
               Cow position:chrX:24331795-24332016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chrX:25207836-25207623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1069-1288
               
               
               Cow position:chrX:29050268-29050483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:1069-1288
               
               
               Cow position:chrX:34532539-34532752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):210, 125

               
               
               Conread position:1069-1289
               
               
               Cow position:chrX:5026275-5026493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):173, 109

               
               
               Conread position:1069-1289
               
               
               Cow position:chrX:24749107-24749327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:1069-1294
               
               
               Cow position:chrX:19394572-19394803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1069-1295
               
               
               Cow position:chrX:5134493-5134721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:1069-1296
               
               
               Cow position:chrX:32943058-32942833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 177

               
               
               Conread position:1070-1273
               
               
               Cow position:chrX:27075031-27074827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:1070-1277
               
               
               Cow position:chrX:16836266-16836066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1070-1278
               
               
               Cow position:chrX:10252178-10251973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:1070-1282
               
               
               Cow position:chrX:21986270-21986068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1070-1282
               
               
               Cow position:chrX:28067870-28068085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):129, 89

               
               
               Conread position:1070-1282
               
               
               Cow position:chrX:38853218-38853444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 47

               
               
               Conread position:1070-1282
               
               
               Cow position:chrX:41454934-41454720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 93

               
               
               Conread position:1070-1283
               
               
               Cow position:chrX:34565306-34565519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):139, 60

               
               
               Conread position:1070-1288
               
               
               Cow position:chrX:4153011-4152805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):216, 105

               
               
               Conread position:1070-1289
               
               
               Cow position:chrX:24425982-24425761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 94

               
               
               Conread position:1070-1291
               
               
               Cow position:chrX:43115171-43115390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):134, 37

               
               
               Conread position:1070-1294
               
               
               Cow position:chrX:34505029-34504810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:1070-1295
               
               
               Cow position:chrX:3579964-3580191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:1071-1277
               
               
               Cow position:chrX:34314046-34314249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1071-1296
               
               
               Cow position:chrX:17949473-17949247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 118

               
               
               Conread position:1072-1281
               
               
               Cow position:chrX:37072411-37072618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1074-1282
               
               
               Cow position:chrX:32208798-32208594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1074-1295
               
               
               Cow position:chrX:34837040-34836824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):210, 104

               
               
               Conread position:1075-1283
               
               
               Cow position:chrX:51871-51668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1075-1283
               
               
               Cow position:chrX:38587818-38587611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):115, 177

               
               
               Conread position:1075-1295
               
               
               Cow position:chrX:27431893-27431675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):200, 103

               
               
               Conread position:1075-1296
               
               
               Cow position:chrX:32866900-32867118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):203, 103

               
               
               Conread position:1076-1294
               
               
               Cow position:chrX:31250869-31250645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):98, 89

               
               
               Conread position:1077-1294
               
               
               Cow position:chrX:13177450-13177240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:1079-1282
               
               
               Cow position:chrX:13913104-13913307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:1080-1252
               
               
               Cow position:chrX:13647755-13647581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1080-1273
               
               
               Cow position:chrX:8326934-8327129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1080-1273
               
               
               Cow position:chrX:35383006-35382818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1080-1277
               
               
               Cow position:chrX:42381082-42380884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 166

               
               
               Conread position:1080-1278
               
               
               Cow position:chrX:41027189-41027389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 105

               
               
               Conread position:1080-1282
               
               
               Cow position:chrX:34792281-34792091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1080-1283
               
               
               Cow position:chrX:4296795-4296589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 108

               
               
               Conread position:1080-1288
               
               
               Cow position:chrX:23359081-23358879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1082-1283
               
               
               Cow position:chrX:17231767-17231972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 104

               
               
               Conread position:1082-1283
               
               
               Cow position:chrX:30962845-30962640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):116, 83

               
               
               Conread position:1082-1285
               
               
               Cow position:chrX:40574910-40574706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:1082-1296
               
               
               Cow position:chrX:22921353-22921570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:1082-1296
               
               
               Cow position:chrX:25049250-25049031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):92, 84

               
               
               Conread position:1083-1277
               
               
               Cow position:chrX:40680647-40680843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1083-1278
               
               
               Cow position:chrX:41941656-41941852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:1083-1279
               
               
               Cow position:chrX:27261224-27261420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:1083-1282
               
               
               Cow position:chrX:11653804-11654000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1083-1282
               
               
               Cow position:chrX:34398751-34398550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:1083-1282
               
               
               Cow position:chrX:48822309-48822110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):113, 185

               
               
               Conread position:1083-1283
               
               
               Cow position:chrX:6407577-6407779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):109, 43

               
               
               Conread position:1083-1285
               
               
               Cow position:chrX:24365788-24365586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:1083-1286
               
               
               Cow position:chrX:38094483-38094290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chrX:11633715-11633923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 102

               
               
               Conread position:1083-1288
               
               
               Cow position:chrX:19018798-19018589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1083-1288
               
               
               Cow position:chrX:46909848-46910049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):193, 92

               
               
               Conread position:1083-1289
               
               
               Cow position:chrX:2314586-2314377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):84, 91

               
               
               Conread position:1083-1289
               
               
               Cow position:chrX:13121971-13122185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1083-1293
               
               
               Cow position:chrX:25035349-25035136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1083-1295
               
               
               Cow position:chrX:20887608-20887403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1083-1296
               
               
               Cow position:chrX:17498355-17498571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 80

               
               
               Conread position:1083-1296
               
               
               Cow position:chrX:27705619-27705835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 92

               
               
               Conread position:1084-1272
               
               
               Cow position:chrX:35681602-35681790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:1084-1283
               
               
               Cow position:chrX:17524350-17524149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 77

               
               
               Conread position:1084-1283
               
               
               Cow position:chrX:48003880-48004081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 82

               
               
               Conread position:1084-1284
               
               
               Cow position:chrX:27446720-27446918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 80

               
               
               Conread position:1084-1285
               
               
               Cow position:chrX:35276019-35276224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 95

               
               
               Conread position:1084-1288
               
               
               Cow position:chrX:42893960-42894160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1084-1296
               
               
               Cow position:chrX:12979800-12979590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):115, 104

               
               
               Conread position:1085-1268
               
               
               Cow position:chrX:31436509-31436688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1085-1279
               
               
               Cow position:chrX:36283375-36283570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 89

               
               
               Conread position:1085-1283
               
               
               Cow position:chrX:18439031-18439232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 81

               
               
               Conread position:1085-1285
               
               
               Cow position:chrX:46079120-46079323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 81

               
               
               Conread position:1085-1288
               
               
               Cow position:chrX:5487897-5487709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1085-1288
               
               
               Cow position:chrX:39290394-39290593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):158, 80

               
               
               Conread position:1085-1295
               
               
               Cow position:chrX:34991399-34991606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1085-1296
               
               
               Cow position:chrX:27206832-27207042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:1086-1239
               
               
               Cow position:chrX:29688139-29687985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):100, 79

               
               
               Conread position:1086-1277
               
               
               Cow position:chrX:8869366-8869176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1086-1283
               
               
               Cow position:chrX:34376978-34377173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1086-1288
               
               
               Cow position:chrX:20583702-20583898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1086-1293
               
               
               Cow position:chrX:30337918-30337712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:1086-1296
               
               
               Cow position:chrX:5919528-5919734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:1087-1275
               
               
               Cow position:chrX:41858845-41858658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1087-1280
               
               
               Cow position:chrX:6480559-6480363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 14

               
               
               Conread position:1088-1276
               
               
               Cow position:chrX:26493044-26493234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:1088-1279
               
               
               Cow position:chrX:38549486-38549677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):129, 6

               
               
               Conread position:1088-1283
               
               
               Cow position:chrX:40035401-40035208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 6

               
               
               Conread position:1088-1284
               
               
               Cow position:chrX:16556179-16555989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1088-1288
               
               
               Cow position:chrX:12095734-12095532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 75

               
               
               Conread position:1088-1288
               
               
               Cow position:chrX:30672358-30672145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:1090-1283
               
               
               Cow position:chrX:35409792-35409986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:1090-1294
               
               
               Cow position:chrX:4403357-4403563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1091-1277
               
               
               Cow position:chrX:31983544-31983350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1092-1278
               
               
               Cow position:chrX:23471824-23471639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1092-1288
               
               
               Cow position:chrX:27442497-27442298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 72

               
               
               Conread position:1093-1277
               
               
               Cow position:chrX:46068716-46068536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1093-1288
               
               
               Cow position:chrX:17956734-17956928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1093-1295
               
               
               Cow position:chrX:42760295-42760499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 89

               
               
               Conread position:1096-1283
               
               
               Cow position:chrX:42875258-42875442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1096-1288
               
               
               Cow position:chrX:20666855-20666664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:1096-1295
               
               
               Cow position:chrX:11529392-11529584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1097-1283
               
               
               Cow position:chrX:47255495-47255684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:1099-1282
               
               
               Cow position:chrX:41166776-41166596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1102-1259
               
               
               Cow position:chrX:35542939-35543094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1102-1287
               
               
               Cow position:chrX:12802-12980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1103-1295
               
               
               Cow position:chrX:18485856-18486049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 61

               
               
               Conread position:1107-1283
               
               
               Cow position:chrX:23497634-23497463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1107-1285
               
               
               Cow position:chrX:44040233-44040413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):92, 58

               
               
               Conread position:1107-1290
               
               
               Cow position:chrX:27175055-27175242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:1115-1278
               
               
               Cow position:chrX:41215387-41215552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1115-1296
               
               
               Cow position:chrX:11674175-11674360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:1117-1282
               
               
               Cow position:chrX:42086894-42087058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 127

               
               
               Conread position:1117-1283
               
               
               Cow position:chrX:39642555-39642393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):161, 33

               
               
               Conread position:1117-1294
               
               
               Cow position:chrX:26882013-26881833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:1117-1294
               
               
               Cow position:chrX:40556392-40556221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 63

               
               
               Conread position:1117-1296
               
               
               Cow position:chrX:14135745-14135924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):163, 62

               
               
               Conread position:1118-1288
               
               
               Cow position:chrX:11589299-11589128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1119-1296
               
               
               Cow position:chrX:4750263-4750094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1120-1293
               
               
               Cow position:chrX:4486954-4486781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 161

               
               
               Conread position:1121-1283
               
               
               Cow position:chrX:3494974-3494815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):148, 18

               
               
               Conread position:1122-1288
               
               
               Cow position:chrX:29682039-29681880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1124-1284
               
               
               Cow position:chrX:231944-231791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1124-1290
               
               
               Cow position:chrX:47730556-47730721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:1131-1285
               
               
               Cow position:chrX:17744704-17744856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 58

               
               
               Conread position:1133-1277
               
               
               Cow position:chrX:31279841-31279699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1133-1284
               
               
               Cow position:chrX:43028315-43028464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1133-1288
               
               
               Cow position:chrX:35029843-35029698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1134-1282
               
               
               Cow position:chrX:37176958-37177099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1134-1282
               
               
               Cow position:chrX:47979381-47979532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 123