Cow genome map
| Conread name: | Thy1-THY010012D08 |
| Conread position: | 307-784 |
| Cow position: | chr1:4645718-4646181 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 324-787 |
| Cow position: | chr1:58196633-58197104 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 412-784 |
| Cow position: | chr1:81320591-81320974 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 122, 92 |
| Conread position: | 514-784 |
| Cow position: | chr1:102431111-102431386 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 533-784 |
| Cow position: | chr10:39774962-39775214 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 326-784 |
| Cow position: | chr11:12178571-12178104 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 67 |
| Conread position: | 345-784 |
| Cow position: | chr11:41105931-41106378 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 181, 13 |
| Conread position: | 410-784 |
| Cow position: | chr11:49037018-49037397 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 598-784 |
| Cow position: | chr11:40772868-40773054 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-784 |
| Cow position: | chr12:15924975-15925454 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 307-784 |
| Cow position: | chr13:1881937-1882421 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 325-784 |
| Cow position: | chr13:50189515-50189981 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 68 |
| Conread position: | 299-476 |
| Cow position: | chr14:48273991-48273816 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 307-784 |
| Cow position: | chr14:8102235-8102717 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 315-784 |
| Cow position: | chr14:32277080-32277557 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 325-784 |
| Cow position: | chr15:6550181-6550649 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 302 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 206, 68 |
| Conread position: | 325-784 |
| Cow position: | chr15:45501722-45502189 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 106, 70 |
| Conread position: | 457-784 |
| Cow position: | chr15:35739532-35739196 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 315-784 |
| Cow position: | chr17:15439446-15438968 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 307 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 231-784 |
| Cow position: | chr18:29797119-29797685 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 366 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 171 |
| Conread position: | 307-783 |
| Cow position: | chr18:30231683-30232157 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 326-784 |
| Cow position: | chr18:16641314-16640848 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 303 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 105, 64 |
| Conread position: | 307-790 |
| Cow position: | chr19:30456452-30455974 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 80-784 |
| Cow position: | chr2:36866996-36867709 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 434 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 307-784 |
| Cow position: | chr2:78750110-78749632 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 329-784 |
| Cow position: | chr2:45917454-45917922 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 68 |
| Conread position: | 307-784 |
| Cow position: | chr20:27895635-27896081 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 307 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 325-784 |
| Cow position: | chr20:16516160-16515692 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 68 |
| Conread position: | 453-784 |
| Cow position: | chr20:2889884-2890222 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 325-784 |
| Cow position: | chr21:11509883-11509420 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 302 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 209, 32 |
| Conread position: | 307-784 |
| Cow position: | chr22:3488543-3489030 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 310-784 |
| Cow position: | chr22:45106345-45106821 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 327-784 |
| Cow position: | chr22:33448535-33448997 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 229, 53 |
| Conread position: | 315-784 |
| Cow position: | chr23:5441695-5441216 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 350-783 |
| Cow position: | chr24:17752417-17752853 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 215, 43 |
| Conread position: | 309-784 |
| Cow position: | chr25:30325814-30326273 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 39 |
| Conread position: | 310-784 |
| Cow position: | chr25:13941171-13941645 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 315 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 150, 76 |
| Conread position: | 342-784 |
| Cow position: | chr25:24302727-24303177 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 287 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 192, 55 |
| Conread position: | 355-784 |
| Cow position: | chr27:18559196-18559634 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 181, 39 |
| Conread position: | 342-784 |
| Cow position: | chr28:23869028-23868584 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 293 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 192, 48 |
| Conread position: | 315-786 |
| Cow position: | chr29:14569092-14568615 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 342-785 |
| Cow position: | chr29:15325514-15325064 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 15 |
| Conread position: | 304-784 |
| Cow position: | chr3:14285449-14284964 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 307-465 |
| Cow position: | chr3:57968886-57968731 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 315-784 |
| Cow position: | chr3:44927523-44927044 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 321 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 315-784 |
| Cow position: | chr3:74061177-74060700 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 604-784 |
| Cow position: | chr3:41315509-41315332 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 315-784 |
| Cow position: | chr4:17032986-17033465 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 325-785 |
| Cow position: | chr4:33180795-33181251 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 17 |
| Conread position: | 340-787 |
| Cow position: | chr4:61399872-61400319 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 148, 47 |
| Conread position: | 315-784 |
| Cow position: | chr6:23567854-23568318 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 320-784 |
| Cow position: | chr6:27173591-27173116 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 75 |
| Conread position: | 266-787 |
| Cow position: | chr7:68529485-68528968 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 317, 127 |
| Conread position: | 605-784 |
| Cow position: | chr7:48274679-48274858 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 147, 162 |
| Conread position: | 299-783 |
| Cow position: | chr8:51446115-51446605 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 315-784 |
| Cow position: | chr8:51882027-51882502 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 66-274 |
| Cow position: | chr9:40131779-40131576 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 521-784 |
| Cow position: | chr9:54459023-54459298 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 310-784 |
| Cow position: | chrX:30163648-30164126 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 224, 9 |
| Conread position: | 315-784 |
| Cow position: | chrX:30159404-30159878 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 345-784 |
| Cow position: | chrX:41846974-41847418 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 292 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 207, 52 |
| Conread position: | 480-784 |
| Cow position: | chrX:19595351-19595040 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 483-784 |
| Cow position: | chrX:25204759-25204448 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 53, 21 |