Non-Coding RNA Search

Cow genome map


           Conread name:
           Thy1-THY010068C08
        

               Conread position:
               2-175
               

               Cow position:
               chr1:63314544-63314368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               76, 54
               

               Conread position:
               4-175
               

               Cow position:
               chr1:82383970-82384141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               74, 135
               

               Conread position:
               170-771
               

               Cow position:
               chr1:16216450-16217043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 90
               

               Conread position:
               174-590
               

               Cow position:
               chr1:24652500-24652090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 138
               

               Conread position:
               174-779
               

               Cow position:
               chr1:67292850-67292242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 101
               

               Conread position:
               176-545
               

               Cow position:
               chr1:30519818-30519433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               273
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               24, 114
               

               Conread position:
               177-399
               

               Cow position:
               chr1:39545005-39544783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               38, 128
               

               Conread position:
               177-410
               

               Cow position:
               chr1:13877265-13877500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 44
               

               Conread position:
               177-413
               

               Cow position:
               chr1:84227026-84226784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               56, 134
               

               Conread position:
               177-442
               

               Cow position:
               chr1:33713288-33713021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               56, 131
               

               Conread position:
               177-444
               

               Cow position:
               chr1:32566706-32566975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               177-455
               

               Cow position:
               chr1:22619423-22619702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               19, 91
               

               Conread position:
               177-475
               

               Cow position:
               chr1:34693901-34693605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               220
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               55, 128
               

               Conread position:
               177-477
               

               Cow position:
               chr1:3934039-3934347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               224
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               59, 135
               

               Conread position:
               177-495
               

               Cow position:
               chr1:38419891-38419571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               235
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               55, 20
               

               Conread position:
               177-498
               

               Cow position:
               chr1:99315464-99315168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               177-513
               

               Cow position:
               chr1:70419163-70419503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               54, 123
               

               Conread position:
               177-513
               

               Cow position:
               chr1:73197805-73198147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               237
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               56, 132
               

               Conread position:
               177-529
               

               Cow position:
               chr1:77115496-77115842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               21, 55
               

               Conread position:
               177-587
               

               Cow position:
               chr1:69404223-69403807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 29
               

               Conread position:
               177-595
               

               Cow position:
               chr1:74285570-74285997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 135
               

               Conread position:
               177-609
               

               Cow position:
               chr1:86595275-86595718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 132
               

               Conread position:
               177-646
               

               Cow position:
               chr1:18274412-18273929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 186
               

               Conread position:
               177-682
               

               Cow position:
               chr1:99018790-99019308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 46
               

               Conread position:
               177-717
               

               Cow position:
               chr1:98658690-98659238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 22
               

               Conread position:
               177-741
               

               Cow position:
               chr1:27178269-27178825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 49
               

               Conread position:
               177-743
               

               Cow position:
               chr1:86611355-86610789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 97
               

               Conread position:
               177-752
               

               Cow position:
               chr1:72081995-72081400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 183
               

               Conread position:
               177-765
               

               Cow position:
               chr1:31417286-31417893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 12
               

               Conread position:
               177-765
               

               Cow position:
               chr1:67833912-67834520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 316
               

               Conread position:
               177-765
               

               Cow position:
               chr1:85792898-85792302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 134
               

               Conread position:
               177-766
               

               Cow position:
               chr1:58200291-58200881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 18
               

               Conread position:
               177-767
               

               Cow position:
               chr1:56724369-56723777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               393
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               200, 21
               

               Conread position:
               177-767
               

               Cow position:
               chr1:57423615-57424222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 134
               

               Conread position:
               177-767
               

               Cow position:
               chr1:80357957-80358562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 574
               

               Conread position:
               177-767
               

               Cow position:
               chr1:82653883-82653284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 134
               

               Conread position:
               177-767
               

               Cow position:
               chr1:86546918-86547520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 310
               

               Conread position:
               177-768
               

               Cow position:
               chr1:93855736-93855137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 87
               

               Conread position:
               177-769
               

               Cow position:
               chr1:102433823-102434421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 134
               

               Conread position:
               177-770
               

               Cow position:
               chr1:79635764-79636348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 300
               

               Conread position:
               177-772
               

               Cow position:
               chr1:17011515-17012125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 126
               

               Conread position:
               177-772
               

               Cow position:
               chr1:29035499-29034908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 267
               

               Conread position:
               177-772
               

               Cow position:
               chr1:40683523-40684083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 132
               

               Conread position:
               177-772
               

               Cow position:
               chr1:56164767-56164163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 59
               

               Conread position:
               177-775
               

               Cow position:
               chr1:6195460-6194845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 544
               

               Conread position:
               177-775
               

               Cow position:
               chr1:55777796-55777195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 21
               

               Conread position:
               177-775
               

               Cow position:
               chr1:91891902-91892505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 128
               

               Conread position:
               177-775
               

               Cow position:
               chr1:91900243-91899614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 134
               

               Conread position:
               177-776
               

               Cow position:
               chr1:62804952-62805567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 123
               

               Conread position:
               177-776
               

               Cow position:
               chr1:69921215-69921825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 123
               

               Conread position:
               177-779
               

               Cow position:
               chr1:26517668-26518279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 123
               

               Conread position:
               177-779
               

               Cow position:
               chr1:33552146-33551533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 135
               

               Conread position:
               177-779
               

               Cow position:
               chr1:63604553-63605169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 135
               

               Conread position:
               177-779
               

               Cow position:
               chr1:68606328-68606934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 83
               

               Conread position:
               177-779
               

               Cow position:
               chr1:72984700-72984110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               369, 21
               

               Conread position:
               177-779
               

               Cow position:
               chr1:79455735-79456363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 135
               

               Conread position:
               177-779
               

               Cow position:
               chr1:94660893-94660282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 135
               

               Conread position:
               177-789
               

               Cow position:
               chr1:8826264-8825652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 124
               

               Conread position:
               177-789
               

               Cow position:
               chr1:57663238-57662621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 123
               

               Conread position:
               177-793
               

               Cow position:
               chr1:9259702-9259089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 135
               

               Conread position:
               177-793
               

               Cow position:
               chr1:12060994-12061622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 134
               

               Conread position:
               177-793
               

               Cow position:
               chr1:28874296-28873673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 118
               

               Conread position:
               177-793
               

               Cow position:
               chr1:30533802-30534425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 122
               

               Conread position:
               177-793
               

               Cow position:
               chr1:42737665-42737051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               337, 47
               

               Conread position:
               177-793
               

               Cow position:
               chr1:59208928-59209558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 132
               

               Conread position:
               177-793
               

               Cow position:
               chr1:63503034-63502426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 62
               

               Conread position:
               177-793
               

               Cow position:
               chr1:72038346-72038958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 86
               

               Conread position:
               177-793
               

               Cow position:
               chr1:72185663-72186286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 131
               

               Conread position:
               177-793
               

               Cow position:
               chr1:76620461-76621089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               635
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 121
               

               Conread position:
               177-793
               

               Cow position:
               chr1:79111706-79111083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               635
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 112
               

               Conread position:
               178-767
               

               Cow position:
               chr1:40575428-40574832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 127
               

               Conread position:
               178-769
               

               Cow position:
               chr1:99914644-99914040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 122
               

               Conread position:
               178-792
               

               Cow position:
               chr1:102813416-102812784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               416
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               47, 199
               

               Conread position:
               179-555
               

               Cow position:
               chr1:20525694-20525309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               258
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               55, 130
               

               Conread position:
               179-728
               

               Cow position:
               chr1:20830108-20829568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 55
               

               Conread position:
               179-766
               

               Cow position:
               chr1:31397903-31397312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 37
               

               Conread position:
               179-772
               

               Cow position:
               chr1:29363515-29362911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 306
               

               Conread position:
               179-772
               

               Cow position:
               chr1:53199760-53199164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 256
               

               Conread position:
               179-787
               

               Cow position:
               chr1:43406609-43406001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               384
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               42, 127
               

               Conread position:
               179-793
               

               Cow position:
               chr1:5356343-5355719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 120
               

               Conread position:
               180-481
               

               Cow position:
               chr1:71442925-71442628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               54, 19
               

               Conread position:
               180-680
               

               Cow position:
               chr1:20080743-20081208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               359, 46
               

               Conread position:
               181-510
               

               Cow position:
               chr1:55320865-55321192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               17, 124
               

               Conread position:
               181-649
               

               Cow position:
               chr1:57696945-57697418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 299
               

               Conread position:
               181-693
               

               Cow position:
               chr1:58882555-58883090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 83
               

               Conread position:
               181-701
               

               Cow position:
               chr1:7141583-7142105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               353
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               20, 32
               

               Conread position:
               181-750
               

               Cow position:
               chr1:40511801-40512376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 88
               

               Conread position:
               181-756
               

               Cow position:
               chr1:85779229-85779806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 150
               

               Conread position:
               181-767
               

               Cow position:
               chr1:33852491-33851904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 53
               

               Conread position:
               181-775
               

               Cow position:
               chr1:88131989-88131387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 49
               

               Conread position:
               181-788
               

               Cow position:
               chr1:66105124-66104511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               382
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               41, 97
               

               Conread position:
               182-582
               

               Cow position:
               chr1:53364764-53364363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 125
               

               Conread position:
               182-767
               

               Cow position:
               chr1:11290899-11291489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 127
               

               Conread position:
               183-767
               

               Cow position:
               chr1:48247053-48246451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 129
               

               Conread position:
               183-775
               

               Cow position:
               chr1:3384810-3385406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 129
               

               Conread position:
               185-595
               

               Cow position:
               chr1:102781089-102781504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 114
               

               Conread position:
               186-663
               

               Cow position:
               chr1:9381394-9381874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               319
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               18, 12
               

               Conread position:
               187-570
               

               Cow position:
               chr1:55275824-55276214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               267
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               11, 31
               

               Conread position:
               187-699
               

               Cow position:
               chr1:30282490-30283013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 122
               

               Conread position:
               187-793
               

               Cow position:
               chr1:31359615-31359034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               397
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               48, 131
               

               Conread position:
               187-793
               

               Cow position:
               chr1:55155790-55156407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 134
               

               Conread position:
               190-769
               

               Cow position:
               chr1:18026599-18027176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 48
               

               Conread position:
               190-789
               

               Cow position:
               chr1:43570209-43570808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 121
               

               Conread position:
               191-771
               

               Cow position:
               chr1:88212607-88213175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               366
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               74, 49
               

               Conread position:
               192-686
               

               Cow position:
               chr1:67326731-67327206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               337
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               193-761
               

               Cow position:
               chr1:29608498-29609059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               308, 12
               

               Conread position:
               195-772
               

               Cow position:
               chr1:82911948-82912529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 38
               

               Conread position:
               197-370
               

               Cow position:
               chr1:16581308-16581481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               8, 34
               

               Conread position:
               197-681
               

               Cow position:
               chr1:39539750-39540232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 41
               

               Conread position:
               197-779
               

               Cow position:
               chr1:18241323-18241905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 108
               

               Conread position:
               201-769
               

               Cow position:
               chr1:82922993-82923568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 21
               

               Conread position:
               207-772
               

               Cow position:
               chr1:23052950-23052390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 100
               

               Conread position:
               218-536
               

               Cow position:
               chr1:1460025-1460343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               224
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               122, 18
               

               Conread position:
               231-497
               

               Cow position:
               chr1:44150553-44150295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               11, 27
               

               Conread position:
               231-776
               

               Cow position:
               chr1:25551118-25550571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 73
               

               Conread position:
               231-776
               

               Cow position:
               chr1:44100243-44100787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 71
               

               Conread position:
               232-398
               

               Cow position:
               chr1:29039196-29039030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               21, 71
               

               Conread position:
               232-398
               

               Cow position:
               chr1:77510609-77510772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               232-646
               

               Cow position:
               chr1:40438020-40438401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               276
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               278, 79
               

               Conread position:
               232-769
               

               Cow position:
               chr1:25178874-25179408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 59
               

               Conread position:
               232-769
               

               Cow position:
               chr1:65387475-65386949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 59
               

               Conread position:
               232-770
               

               Cow position:
               chr1:88269080-88269621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 70
               

               Conread position:
               232-771
               

               Cow position:
               chr1:91446617-91446090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               278, 78
               

               Conread position:
               232-779
               

               Cow position:
               chr1:49973029-49973581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 71
               

               Conread position:
               232-793
               

               Cow position:
               chr1:52358104-52358679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 30
               

               Conread position:
               232-793
               

               Cow position:
               chr1:56143183-56143739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 68
               

               Conread position:
               232-793
               

               Cow position:
               chr1:76544380-76544943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 71
               

               Conread position:
               237-495
               

               Cow position:
               chr1:101860919-101861166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               237-641
               

               Cow position:
               chr1:57658035-57657634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 54
               

               Conread position:
               237-793
               

               Cow position:
               chr1:22345233-22344680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 62
               

               Conread position:
               238-480
               

               Cow position:
               chr1:56936508-56936744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               238-772
               

               Cow position:
               chr1:67287973-67287441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 65
               

               Conread position:
               239-731
               

               Cow position:
               chr1:59648437-59647962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               321
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               23, 64
               

               Conread position:
               240-772
               

               Cow position:
               chr1:13451356-13450818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 87
               

               Conread position:
               240-793
               

               Cow position:
               chr1:8555477-8554924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 60
               

               Conread position:
               241-433
               

               Cow position:
               chr1:2412911-2413100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               190, 70
               

               Conread position:
               262-453
               

               Cow position:
               chr1:43636806-43636615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               62, 41
               

               Conread position:
               262-647
               

               Cow position:
               chr1:53563017-53562640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               248, 41
               

               Conread position:
               262-752
               

               Cow position:
               chr1:28712017-28711523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 39
               

               Conread position:
               262-793
               

               Cow position:
               chr1:62243516-62244047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 38
               

               Conread position:
               268-561
               

               Cow position:
               chr1:78923217-78922935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 36
               

               Conread position:
               273-793
               

               Cow position:
               chr1:44044897-44044375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 27
               

               Conread position:
               276-779
               

               Cow position:
               chr1:70385572-70385063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               318
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               88, 25
               

               Conread position:
               279-768
               

               Cow position:
               chr1:21691127-21691617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               308
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               251, 8
               

               Conread position:
               282-770
               

               Cow position:
               chr1:88374702-88375162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               254, 22
               

               Conread position:
               286-789
               

               Cow position:
               chr1:43984983-43985481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               329
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               95, 15
               

               Conread position:
               300-764
               

               Cow position:
               chr1:81863410-81863882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 100
               

               Conread position:
               303-582
               

               Cow position:
               chr1:32662815-32662542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               19, 102
               

               Conread position:
               304-459
               

               Cow position:
               chr1:76703199-76703354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               305-767
               

               Cow position:
               chr1:67000095-66999634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 47
               

               Conread position:
               314-779
               

               Cow position:
               chr1:58336914-58336445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 231
               

               Conread position:
               315-772
               

               Cow position:
               chr1:71561497-71561959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 426
               

               Conread position:
               318-772
               

               Cow position:
               chr1:69767526-69767076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 72
               

               Conread position:
               348-533
               

               Cow position:
               chr1:40054678-40054492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               122, 129
               

               Conread position:
               391-775
               

               Cow position:
               chr1:76751650-76752035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 74
               

               Conread position:
               401-770
               

               Cow position:
               chr1:74256060-74256432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               83, 110
               

               Conread position:
               478-793
               

               Cow position:
               chr1:33713007-33712687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               223
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               42, 263
               

               Conread position:
               555-792
               

               Cow position:
               chr1:82367018-82366778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               597-793
               

               Cow position:
               chr1:28278759-28278565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               64, 32
               

               Conread position:
               174-686
               

               Cow position:
               chr10:187337-186815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 131
               

               Conread position:
               174-793
               

               Cow position:
               chr10:22102479-22101854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 62
               

               Conread position:
               176-586
               

               Cow position:
               chr10:24311123-24311542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               279
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               56, 90
               

               Conread position:
               177-407
               

               Cow position:
               chr10:51782171-51782405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               58, 79
               

               Conread position:
               177-411
               

               Cow position:
               chr10:22575895-22576122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               71, 47
               

               Conread position:
               177-451
               

               Cow position:
               chr10:28256177-28256454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               21, 131
               

               Conread position:
               177-464
               

               Cow position:
               chr10:31539030-31538739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               58, 12
               

               Conread position:
               177-476
               

               Cow position:
               chr10:14843020-14842720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 23
               

               Conread position:
               177-501
               

               Cow position:
               chr10:17433596-17433256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               59, 114
               

               Conread position:
               177-574
               

               Cow position:
               chr10:57502049-57501656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               323, 60
               

               Conread position:
               177-600
               

               Cow position:
               chr10:42752373-42751945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 131
               

               Conread position:
               177-647
               

               Cow position:
               chr10:32701967-32701493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 123
               

               Conread position:
               177-657
               

               Cow position:
               chr10:14862923-14862449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               312
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               62, 133
               

               Conread position:
               177-680
               

               Cow position:
               chr10:39778876-39779390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 409
               

               Conread position:
               177-693
               

               Cow position:
               chr10:1378745-1378222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 131
               

               Conread position:
               177-744
               

               Cow position:
               chr10:30684253-30684848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 95
               

               Conread position:
               177-762
               

               Cow position:
               chr10:39181035-39180436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 21
               

               Conread position:
               177-767
               

               Cow position:
               chr10:11684392-11685003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 317
               

               Conread position:
               177-767
               

               Cow position:
               chr10:14805085-14804476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 133
               

               Conread position:
               177-767
               

               Cow position:
               chr10:19495049-19495637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 57
               

               Conread position:
               177-767
               

               Cow position:
               chr10:19544150-19544726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 55
               

               Conread position:
               177-767
               

               Cow position:
               chr10:41878162-41877562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 134
               

               Conread position:
               177-767
               

               Cow position:
               chr10:55094510-55093908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 135
               

               Conread position:
               177-769
               

               Cow position:
               chr10:38544686-38545273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 125
               

               Conread position:
               177-772
               

               Cow position:
               chr10:21399439-21400034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 57
               

               Conread position:
               177-772
               

               Cow position:
               chr10:21481173-21480558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 131
               

               Conread position:
               177-772
               

               Cow position:
               chr10:40151013-40151609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               335, 57
               

               Conread position:
               177-772
               

               Cow position:
               chr10:41158686-41158084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 128
               

               Conread position:
               177-772
               

               Cow position:
               chr10:47908173-47907567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 47
               

               Conread position:
               177-775
               

               Cow position:
               chr10:2119774-2120377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 135
               

               Conread position:
               177-779
               

               Cow position:
               chr10:38344120-38344730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 122
               

               Conread position:
               177-779
               

               Cow position:
               chr10:57988755-57989360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               177-785
               

               Cow position:
               chr10:40462303-40461713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               396
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               96, 23
               

               Conread position:
               177-791
               

               Cow position:
               chr10:39040056-39040685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 399
               

               Conread position:
               177-793
               

               Cow position:
               chr10:279368-279992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 87
               

               Conread position:
               177-793
               

               Cow position:
               chr10:7280863-7281472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 59
               

               Conread position:
               177-793
               

               Cow position:
               chr10:11821981-11821388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 20
               

               Conread position:
               177-793
               

               Cow position:
               chr10:14334606-14335233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 135
               

               Conread position:
               177-793
               

               Cow position:
               chr10:29845406-29846028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 5
               

               Conread position:
               178-588
               

               Cow position:
               chr10:29109904-29110318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               281
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               61, 48
               

               Conread position:
               178-779
               

               Cow position:
               chr10:58597611-58597023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 133
               

               Conread position:
               179-641
               

               Cow position:
               chr10:27664029-27664496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 125
               

               Conread position:
               179-718
               

               Cow position:
               chr10:57556098-57556649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 130
               

               Conread position:
               179-740
               

               Cow position:
               chr10:19840920-19840350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 130
               

               Conread position:
               179-793
               

               Cow position:
               chr10:28642774-28642149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 121
               

               Conread position:
               181-538
               

               Cow position:
               chr10:40398234-40397893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               328, 33
               

               Conread position:
               181-604
               

               Cow position:
               chr10:29011417-29011845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 244
               

               Conread position:
               181-630
               

               Cow position:
               chr10:44708376-44708835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 83
               

               Conread position:
               181-730
               

               Cow position:
               chr10:42750055-42749514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 118
               

               Conread position:
               181-767
               

               Cow position:
               chr10:41568336-41567744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 100
               

               Conread position:
               181-787
               

               Cow position:
               chr10:58812516-58813121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               406
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               51, 104
               

               Conread position:
               181-793
               

               Cow position:
               chr10:50135808-50135177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               643
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 130
               

               Conread position:
               182-641
               

               Cow position:
               chr10:1665297-1665764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 129
               

               Conread position:
               185-514
               

               Cow position:
               chr10:38849521-38849205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               108, 16
               

               Conread position:
               185-543
               

               Cow position:
               chr10:58096794-58097143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               243
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               185-746
               

               Cow position:
               chr10:13220196-13220742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               356
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               67, 100
               

               Conread position:
               185-793
               

               Cow position:
               chr10:34286492-34285873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 124
               

               Conread position:
               193-771
               

               Cow position:
               chr10:66899155-66899723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               371, 45
               

               Conread position:
               196-787
               

               Cow position:
               chr10:29722831-29723436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 28
               

               Conread position:
               206-779
               

               Cow position:
               chr10:16477956-16477391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 27
               

               Conread position:
               231-793
               

               Cow position:
               chr10:38537320-38537881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 71
               

               Conread position:
               232-476
               

               Cow position:
               chr10:51844017-51844256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               91, 45
               

               Conread position:
               232-640
               

               Cow position:
               chr10:3541893-3542281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               278
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               287, 49
               

               Conread position:
               232-745
               

               Cow position:
               chr10:28928782-28929286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 72
               

               Conread position:
               232-769
               

               Cow position:
               chr10:8326144-8326653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               305, 64
               

               Conread position:
               237-509
               

               Cow position:
               chr10:64146101-64145836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               197
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               238-789
               

               Cow position:
               chr10:32558519-32557974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               365
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               27, 85
               

               Conread position:
               238-793
               

               Cow position:
               chr10:24976601-24977144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 64
               

               Conread position:
               262-613
               

               Cow position:
               chr10:47083620-47083971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 38
               

               Conread position:
               271-751
               

               Cow position:
               chr10:2232615-2233080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               304
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               176, 39
               

               Conread position:
               304-769
               

               Cow position:
               chr10:21488029-21487561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 79
               

               Conread position:
               308-793
               

               Cow position:
               chr10:125496-125008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 14
               

               Conread position:
               315-793
               

               Cow position:
               chr10:11699342-11698859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 162
               

               Conread position:
               323-776
               

               Cow position:
               chr10:39815447-39815908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 419
               

               Conread position:
               339-793
               

               Cow position:
               chr10:29631693-29632151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 110
               

               Conread position:
               348-688
               

               Cow position:
               chr10:7274837-7274492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               234
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               348-793
               

               Cow position:
               chr10:21730782-21731231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 67
               

               Conread position:
               349-548
               

               Cow position:
               chr10:20290773-20290972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               121, 128
               

               Conread position:
               349-602
               

               Cow position:
               chr10:4190749-4191004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               162, 41
               

               Conread position:
               350-779
               

               Cow position:
               chr10:62407781-62408214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 5
               

               Conread position:
               434-770
               

               Cow position:
               chr10:31538632-31538298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               80, 25
               

               Conread position:
               544-747
               

               Cow position:
               chr10:41774311-41774516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               20, 103
               

               Conread position:
               552-793
               

               Cow position:
               chr10:19714705-19714949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               12, 155
               

               Conread position:
               568-779
               

               Cow position:
               chr10:42229666-42229450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               61, 36
               

               Conread position:
               157-576
               

               Cow position:
               chr11:1489249-1489669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 98
               

               Conread position:
               164-510
               

               Cow position:
               chr11:10883200-10882860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               14, 34
               

               Conread position:
               167-688
               

               Cow position:
               chr11:3856111-3855596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 6
               

               Conread position:
               170-624
               

               Cow position:
               chr11:7110221-7110691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               326
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               53, 142
               

               Conread position:
               170-779
               

               Cow position:
               chr11:9156261-9156885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 146
               

               Conread position:
               170-779
               

               Cow position:
               chr11:38834548-38835159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 130
               

               Conread position:
               174-685
               

               Cow position:
               chr11:4056609-4057115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 38
               

               Conread position:
               174-779
               

               Cow position:
               chr11:45921727-45922353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 13
               

               Conread position:
               176-411
               

               Cow position:
               chr11:42311560-42311801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               49, 21
               

               Conread position:
               176-555
               

               Cow position:
               chr11:49840734-49840355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               57, 124
               

               Conread position:
               176-767
               

               Cow position:
               chr11:36763626-36763030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 19
               

               Conread position:
               176-793
               

               Cow position:
               chr11:26564210-26564816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               455
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 48
               

               Conread position:
               176-793
               

               Cow position:
               chr11:41169813-41170432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 124
               

               Conread position:
               177-413
               

               Cow position:
               chr11:14728168-14728397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               58, 41
               

               Conread position:
               177-413
               

               Cow position:
               chr11:39804618-39804377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               21, 113
               

               Conread position:
               177-467
               

               Cow position:
               chr11:15898112-15898406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               217
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               55, 47
               

               Conread position:
               177-472
               

               Cow position:
               chr11:72310154-72310455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               216
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               56, 96
               

               Conread position:
               177-486
               

               Cow position:
               chr11:75554119-75554414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               222
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               285, 58
               

               Conread position:
               177-495
               

               Cow position:
               chr11:15943466-15943789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               56, 47
               

               Conread position:
               177-589
               

               Cow position:
               chr11:29232138-29232550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 132
               

               Conread position:
               177-605
               

               Cow position:
               chr11:49553291-49553717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               297
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               40, 67
               

               Conread position:
               177-748
               

               Cow position:
               chr11:19063193-19063774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 22
               

               Conread position:
               177-751
               

               Cow position:
               chr11:4269522-4270091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 123
               

               Conread position:
               177-767
               

               Cow position:
               chr11:17106803-17107407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 134
               

               Conread position:
               177-767
               

               Cow position:
               chr11:17547042-17546447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 83
               

               Conread position:
               177-767
               

               Cow position:
               chr11:37476102-37476718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 197
               

               Conread position:
               177-767
               

               Cow position:
               chr11:67845691-67846291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 127
               

               Conread position:
               177-768
               

               Cow position:
               chr11:31927044-31926451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 106
               

               Conread position:
               177-769
               

               Cow position:
               chr11:24394193-24393600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 131
               

               Conread position:
               177-769
               

               Cow position:
               chr11:53431170-53431781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 546
               

               Conread position:
               177-770
               

               Cow position:
               chr11:28228886-28229481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 134
               

               Conread position:
               177-772
               

               Cow position:
               chr11:3493868-3493272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 128
               

               Conread position:
               177-772
               

               Cow position:
               chr11:63654454-63655062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 293
               

               Conread position:
               177-775
               

               Cow position:
               chr11:26124050-26124655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               177-775
               

               Cow position:
               chr11:29667726-29668337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 123
               

               Conread position:
               177-779
               

               Cow position:
               chr11:53682300-53681698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               400
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               47, 131
               

               Conread position:
               177-787
               

               Cow position:
               chr11:9168651-9169232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               400
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               245, 8
               

               Conread position:
               177-788
               

               Cow position:
               chr11:42363629-42363030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               393
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               56, 98
               

               Conread position:
               177-789
               

               Cow position:
               chr11:54484535-54485154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 139
               

               Conread position:
               177-789
               

               Cow position:
               chr11:81322092-81322702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               397
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               44, 18
               

               Conread position:
               177-793
               

               Cow position:
               chr11:10848330-10847704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 135
               

               Conread position:
               177-793
               

               Cow position:
               chr11:12357534-12358163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               635
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 124
               

               Conread position:
               177-793
               

               Cow position:
               chr11:24336326-24336936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 103
               

               Conread position:
               177-793
               

               Cow position:
               chr11:27058233-27058858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 142
               

               Conread position:
               177-793
               

               Cow position:
               chr11:28053735-28054355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 134
               

               Conread position:
               177-793
               

               Cow position:
               chr11:43513751-43514376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 124
               

               Conread position:
               177-793
               

               Cow position:
               chr11:44156370-44156992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 21
               

               Conread position:
               177-793
               

               Cow position:
               chr11:85392946-85393551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 79
               

               Conread position:
               178-413
               

               Cow position:
               chr11:28064971-28064733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               57, 38
               

               Conread position:
               178-793
               

               Cow position:
               chr11:67451373-67450752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 123
               

               Conread position:
               179-581
               

               Cow position:
               chr11:57627175-57627591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 130
               

               Conread position:
               179-621
               

               Cow position:
               chr11:44517987-44518437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 114
               

               Conread position:
               179-688
               

               Cow position:
               chr11:32452705-32452186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 121
               

               Conread position:
               179-793
               

               Cow position:
               chr11:28109015-28108404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 130
               

               Conread position:
               179-793
               

               Cow position:
               chr11:61400200-61400806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 55
               

               Conread position:
               180-791
               

               Cow position:
               chr11:21475121-21474517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 134
               

               Conread position:
               181-536
               

               Cow position:
               chr11:28673854-28674215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               54, 124
               

               Conread position:
               181-658
               

               Cow position:
               chr11:31861777-31861295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 131
               

               Conread position:
               181-720
               

               Cow position:
               chr11:9733802-9734345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 191
               

               Conread position:
               181-764
               

               Cow position:
               chr11:11989008-11988395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 583
               

               Conread position:
               181-772
               

               Cow position:
               chr11:52420279-52419671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 126
               

               Conread position:
               181-793
               

               Cow position:
               chr11:44252673-44252053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 130
               

               Conread position:
               183-476
               

               Cow position:
               chr11:21930146-21930442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               53, 127
               

               Conread position:
               185-501
               

               Cow position:
               chr11:7117322-7117000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               225
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               48, 104
               

               Conread position:
               185-767
               

               Cow position:
               chr11:20733367-20733962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 123
               

               Conread position:
               190-793
               

               Cow position:
               chr11:23127035-23127632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 28
               

               Conread position:
               192-491
               

               Cow position:
               chr11:18070346-18070633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               193-708
               

               Cow position:
               chr11:4034487-4034997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 114
               

               Conread position:
               199-768
               

               Cow position:
               chr11:47759433-47760002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 33
               

               Conread position:
               207-642
               

               Cow position:
               chr11:4063030-4063450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               295
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               334, 23
               

               Conread position:
               208-792
               

               Cow position:
               chr11:16985497-16986070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               378
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               307, 28
               

               Conread position:
               231-575
               

               Cow position:
               chr11:80473452-80473794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               179, 35
               

               Conread position:
               231-729
               

               Cow position:
               chr11:49409534-49409056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               314
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               39, 43
               

               Conread position:
               232-356
               

               Cow position:
               chr11:46584830-46584952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               51, 73
               

               Conread position:
               232-413
               

               Cow position:
               chr11:37358104-37357926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               232-419
               

               Cow position:
               chr11:81851891-81852078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               183, 90
               

               Conread position:
               232-478
               

               Cow position:
               chr11:22935908-22935667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               232-489
               

               Cow position:
               chr11:65980141-65980394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               232-595
               

               Cow position:
               chr11:18887673-18887321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               136, 17
               

               Conread position:
               232-596
               

               Cow position:
               chr11:26548333-26547963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 36
               

               Conread position:
               232-728
               

               Cow position:
               chr11:19101679-19102177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 70
               

               Conread position:
               232-762
               

               Cow position:
               chr11:9216266-9216794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 71
               

               Conread position:
               232-769
               

               Cow position:
               chr11:12094381-12093845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               279, 25
               

               Conread position:
               232-789
               

               Cow position:
               chr11:50027063-50027600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               287, 78
               

               Conread position:
               238-688
               

               Cow position:
               chr11:5342109-5342563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 53
               

               Conread position:
               238-752
               

               Cow position:
               chr11:1495277-1495795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 65
               

               Conread position:
               238-762
               

               Cow position:
               chr11:21444084-21443582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 36
               

               Conread position:
               238-793
               

               Cow position:
               chr11:64081272-64081829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 53
               

               Conread position:
               239-536
               

               Cow position:
               chr11:21902291-21902580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               270, 42
               

               Conread position:
               239-540
               

               Cow position:
               chr11:77253930-77254217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               272, 65
               

               Conread position:
               263-779
               

               Cow position:
               chr11:10216558-10217062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 36
               

               Conread position:
               272-761
               

               Cow position:
               chr11:27669561-27670051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 38
               

               Conread position:
               291-536
               

               Cow position:
               chr11:5353723-5353958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               217, 19
               

               Conread position:
               296-792
               

               Cow position:
               chr11:73478063-73477563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 18
               

               Conread position:
               306-758
               

               Cow position:
               chr11:15695799-15696246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               277
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               133, 23
               

               Conread position:
               309-506
               

               Cow position:
               chr11:44491495-44491687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               318-793
               

               Cow position:
               chr11:3252127-3252587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               87, 11
               

               Conread position:
               326-793
               

               Cow position:
               chr11:31874062-31874516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 73
               

               Conread position:
               330-769
               

               Cow position:
               chr11:10091400-10090960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 298
               

               Conread position:
               348-643
               

               Cow position:
               chr11:30252902-30252602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               359-558
               

               Cow position:
               chr11:51279726-51279923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               111, 118
               

               Conread position:
               391-769
               

               Cow position:
               chr11:4026900-4027282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 232
               

               Conread position:
               418-789
               

               Cow position:
               chr11:42432768-42432408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               93, 144
               

               Conread position:
               424-789
               

               Cow position:
               chr11:36304578-36304951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               96, 33
               

               Conread position:
               434-789
               

               Cow position:
               chr11:28702627-28702273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               248
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               88, 220
               

               Conread position:
               436-793
               

               Cow position:
               chr11:14728519-14728875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 198
               

               Conread position:
               458-791
               

               Cow position:
               chr11:67866052-67866386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               53, 201
               

               Conread position:
               547-793
               

               Cow position:
               chr11:15898446-15898693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               24, 90
               

               Conread position:
               579-789
               

               Cow position:
               chr11:29232763-29232975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1-177
               

               Cow position:
               chr12:8137457-8137281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               176-767
               

               Cow position:
               chr12:14661460-14662063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 5
               

               Conread position:
               177-441
               

               Cow position:
               chr12:23141026-23141298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               57, 146
               

               Conread position:
               177-553
               

               Cow position:
               chr12:12293124-12292755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               39, 98
               

               Conread position:
               177-643
               

               Cow position:
               chr12:21128295-21127859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 49
               

               Conread position:
               177-663
               

               Cow position:
               chr12:27931737-27932232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 134
               

               Conread position:
               177-686
               

               Cow position:
               chr12:25554194-25554723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 116
               

               Conread position:
               177-767
               

               Cow position:
               chr12:32654714-32654110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 298
               

               Conread position:
               177-769
               

               Cow position:
               chr12:1403659-1403059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 133
               

               Conread position:
               177-772
               

               Cow position:
               chr12:43030215-43030825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 62
               

               Conread position:
               177-776
               

               Cow position:
               chr12:11099389-11098795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 47
               

               Conread position:
               177-780
               

               Cow position:
               chr12:600197-600802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 80
               

               Conread position:
               177-793
               

               Cow position:
               chr12:21942899-21942280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 86
               

               Conread position:
               177-793
               

               Cow position:
               chr12:25099906-25100514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 135
               

               Conread position:
               177-793
               

               Cow position:
               chr12:25262299-25262926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 35
               

               Conread position:
               177-793
               

               Cow position:
               chr12:27854797-27855418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 135
               

               Conread position:
               178-494
               

               Cow position:
               chr12:35345715-35345407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               225
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               95, 50
               

               Conread position:
               179-578
               

               Cow position:
               chr12:21387078-21387485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               277
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               42, 101
               

               Conread position:
               179-793
               

               Cow position:
               chr12:3362104-3361467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               639
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 580
               

               Conread position:
               180-767
               

               Cow position:
               chr12:21209812-21209228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 129
               

               Conread position:
               181-768
               

               Cow position:
               chr12:6405479-6406078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 119
               

               Conread position:
               182-772
               

               Cow position:
               chr12:21429027-21428421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 42
               

               Conread position:
               184-793
               

               Cow position:
               chr12:21199111-21198504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 47
               

               Conread position:
               232-412
               

               Cow position:
               chr12:14695116-14694942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               232-776
               

               Cow position:
               chr12:17979833-17979293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 68
               

               Conread position:
               232-793
               

               Cow position:
               chr12:22204639-22205200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               282, 72
               

               Conread position:
               238-656
               

               Cow position:
               chr12:32677840-32678268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               291
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               199, 54
               

               Conread position:
               238-682
               

               Cow position:
               chr12:41380778-41380332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 62
               

               Conread position:
               239-497
               

               Cow position:
               chr12:349457-349205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               239-595
               

               Cow position:
               chr12:11580858-11580491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 39
               

               Conread position:
               263-793
               

               Cow position:
               chr12:36367904-36367377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 40
               

               Conread position:
               268-769
               

               Cow position:
               chr12:35313610-35314086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               339
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               243, 19
               

               Conread position:
               269-489
               

               Cow position:
               chr12:28004991-28004786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               279-751
               

               Cow position:
               chr12:5551858-5552314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               299
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               382, 20
               

               Conread position:
               394-775
               

               Cow position:
               chr12:28765073-28765457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 315
               

               Conread position:
               437-793
               

               Cow position:
               chr12:36480067-36479718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               78, 42
               

               Conread position:
               174-445
               

               Cow position:
               chr13:43590281-43590006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               61, 113
               

               Conread position:
               174-510
               

               Cow position:
               chr13:11071559-11071891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               36, 136
               

               Conread position:
               174-767
               

               Cow position:
               chr13:32984392-32985000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 580
               

               Conread position:
               174-793
               

               Cow position:
               chr13:31611359-31611981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 135
               

               Conread position:
               177-474
               

               Cow position:
               chr13:31732941-31733245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               217
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               57, 119
               

               Conread position:
               177-481
               

               Cow position:
               chr13:37835377-37835673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               56, 103
               

               Conread position:
               177-527
               

               Cow position:
               chr13:12633493-12633160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               245
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               202, 25
               

               Conread position:
               177-533
               

               Cow position:
               chr13:30654431-30654795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 119
               

               Conread position:
               177-535
               

               Cow position:
               chr13:35758231-35757856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               177-590
               

               Cow position:
               chr13:15543489-15543070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 125
               

               Conread position:
               177-684
               

               Cow position:
               chr13:34041390-34041899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 81
               

               Conread position:
               177-688
               

               Cow position:
               chr13:14177895-14178407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 136
               

               Conread position:
               177-752
               

               Cow position:
               chr13:34938399-34937844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 59
               

               Conread position:
               177-767
               

               Cow position:
               chr13:47229052-47229655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 135
               

               Conread position:
               177-767
               

               Cow position:
               chr13:50110400-50109806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 134
               

               Conread position:
               177-768
               

               Cow position:
               chr13:46102267-46101685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 12
               

               Conread position:
               177-769
               

               Cow position:
               chr13:15450179-15450765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 27
               

               Conread position:
               177-772
               

               Cow position:
               chr13:16254436-16255031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 134
               

               Conread position:
               177-774
               

               Cow position:
               chr13:15923434-15924038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               177-779
               

               Cow position:
               chr13:3653371-3653984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 135
               

               Conread position:
               177-789
               

               Cow position:
               chr13:43982155-43982753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 34
               

               Conread position:
               177-793
               

               Cow position:
               chr13:1592206-1592830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 123
               

               Conread position:
               177-793
               

               Cow position:
               chr13:6667184-6667793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 127
               

               Conread position:
               177-793
               

               Cow position:
               chr13:13900816-13900191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 123
               

               Conread position:
               177-793
               

               Cow position:
               chr13:21839246-21839878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 141
               

               Conread position:
               177-793
               

               Cow position:
               chr13:32546338-32545703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 153
               

               Conread position:
               177-793
               

               Cow position:
               chr13:34324607-34325235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 134
               

               Conread position:
               178-562
               

               Cow position:
               chr13:17330814-17331206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 135
               

               Conread position:
               179-526
               

               Cow position:
               chr13:21697198-21696844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               243
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               55, 130
               

               Conread position:
               179-709
               

               Cow position:
               chr13:34424708-34424165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 130
               

               Conread position:
               179-767
               

               Cow position:
               chr13:60467273-60466679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 119
               

               Conread position:
               179-785
               

               Cow position:
               chr13:42217966-42218585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 121
               

               Conread position:
               179-792
               

               Cow position:
               chr13:2387862-2388490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 123
               

               Conread position:
               179-793
               

               Cow position:
               chr13:17309414-17308790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 107
               

               Conread position:
               179-793
               

               Cow position:
               chr13:49974610-49974004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 55
               

               Conread position:
               179-793
               

               Cow position:
               chr13:57024639-57024029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               181-448
               

               Cow position:
               chr13:14402153-14402426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               52, 119
               

               Conread position:
               181-552
               

               Cow position:
               chr13:11797775-11798145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               254
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               54, 132
               

               Conread position:
               181-793
               

               Cow position:
               chr13:30278557-30277947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 19
               

               Conread position:
               185-793
               

               Cow position:
               chr13:15519566-15520185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 124
               

               Conread position:
               192-563
               

               Cow position:
               chr13:34049676-34049292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               10, 297
               

               Conread position:
               192-688
               

               Cow position:
               chr13:6758901-6758409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               326
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               5, 129
               

               Conread position:
               197-720
               

               Cow position:
               chr13:25692599-25692090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               432, 34
               

               Conread position:
               222-793
               

               Cow position:
               chr13:20541158-20541709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               324, 65
               

               Conread position:
               231-717
               

               Cow position:
               chr13:5625102-5625593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               332
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               7, 299
               

               Conread position:
               232-507
               

               Cow position:
               chr13:34153877-34154148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               232-636
               

               Cow position:
               chr13:52645991-52646396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 68
               

               Conread position:
               237-410
               

               Cow position:
               chr13:47861706-47861536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               238-642
               

               Cow position:
               chr13:28670386-28670786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 47
               

               Conread position:
               238-712
               

               Cow position:
               chr13:3056257-3056733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 53
               

               Conread position:
               238-749
               

               Cow position:
               chr13:60699781-60700291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 66
               

               Conread position:
               238-793
               

               Cow position:
               chr13:32736945-32737502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 53
               

               Conread position:
               253-751
               

               Cow position:
               chr13:47682380-47681888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               315
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               95, 47
               

               Conread position:
               262-466
               

               Cow position:
               chr13:25952948-25952750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               282-788
               

               Cow position:
               chr13:34030245-34029742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 14
               

               Conread position:
               297-493
               

               Cow position:
               chr13:35031945-35031750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 25
               

               Conread position:
               313-696
               

               Cow position:
               chr13:19441371-19440988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               265
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               193, 76
               

               Conread position:
               326-793
               

               Cow position:
               chr13:30239030-30238571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 108
               

               Conread position:
               348-641
               

               Cow position:
               chr13:677788-677494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               122, 129
               

               Conread position:
               427-687
               

               Cow position:
               chr13:21133064-21132807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               47, 90
               

               Conread position:
               580-760
               

               Cow position:
               chr13:28671682-28671860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               51, 17
               

               Conread position:
               174-772
               

               Cow position:
               chr14:27978186-27977576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 125
               

               Conread position:
               176-498
               

               Cow position:
               chr14:43559059-43558734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 23
               

               Conread position:
               176-637
               

               Cow position:
               chr14:33677893-33677416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 158
               

               Conread position:
               176-759
               

               Cow position:
               chr14:13620317-13620916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 137
               

               Conread position:
               176-780
               

               Cow position:
               chr14:44582188-44581567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 303
               

               Conread position:
               177-448
               

               Cow position:
               chr14:30666323-30666048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               59, 8
               

               Conread position:
               177-562
               

               Cow position:
               chr14:22030622-22031010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 123
               

               Conread position:
               177-572
               

               Cow position:
               chr14:40168909-40169294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 59
               

               Conread position:
               177-615
               

               Cow position:
               chr14:13274432-13273979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 168
               

               Conread position:
               177-619
               

               Cow position:
               chr14:38228810-38229215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               319, 14
               

               Conread position:
               177-688
               

               Cow position:
               chr14:5074776-5074281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               333, 58
               

               Conread position:
               177-693
               

               Cow position:
               chr14:37225014-37224487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 135
               

               Conread position:
               177-696
               

               Cow position:
               chr14:45710901-45711422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 118
               

               Conread position:
               177-708
               

               Cow position:
               chr14:45028169-45028726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 133
               

               Conread position:
               177-741
               

               Cow position:
               chr14:2295112-2294523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 444
               

               Conread position:
               177-743
               

               Cow position:
               chr14:17760057-17760622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 112
               

               Conread position:
               177-769
               

               Cow position:
               chr14:16272472-16273076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 132
               

               Conread position:
               177-769
               

               Cow position:
               chr14:19327439-19328048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 132
               

               Conread position:
               177-769
               

               Cow position:
               chr14:46391708-46392300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 134
               

               Conread position:
               177-772
               

               Cow position:
               chr14:2285151-2284555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 57
               

               Conread position:
               177-772
               

               Cow position:
               chr14:9046399-9045784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 134
               

               Conread position:
               177-772
               

               Cow position:
               chr14:12611253-12610669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 22
               

               Conread position:
               177-772
               

               Cow position:
               chr14:44378621-44378022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 118
               

               Conread position:
               177-775
               

               Cow position:
               chr14:7473175-7472580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 59
               

               Conread position:
               177-775
               

               Cow position:
               chr14:12742245-12742851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 123
               

               Conread position:
               177-775
               

               Cow position:
               chr14:16918895-16919500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 125
               

               Conread position:
               177-779
               

               Cow position:
               chr14:12899919-12899312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 134
               

               Conread position:
               177-779
               

               Cow position:
               chr14:17000235-17000849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 124
               

               Conread position:
               177-783
               

               Cow position:
               chr14:47642546-47641918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 145
               

               Conread position:
               177-793
               

               Cow position:
               chr14:5529884-5529264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 53
               

               Conread position:
               177-793
               

               Cow position:
               chr14:45081877-45081246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               638
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 96
               

               Conread position:
               178-621
               

               Cow position:
               chr14:29580988-29580548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 142
               

               Conread position:
               178-685
               

               Cow position:
               chr14:9099899-9100414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 127
               

               Conread position:
               178-688
               

               Cow position:
               chr14:35365444-35365949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 85
               

               Conread position:
               178-772
               

               Cow position:
               chr14:48826108-48825512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 132
               

               Conread position:
               178-789
               

               Cow position:
               chr14:30595547-30596178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               643
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 181
               

               Conread position:
               178-793
               

               Cow position:
               chr14:13863274-13863885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 323
               

               Conread position:
               178-793
               

               Cow position:
               chr14:44775216-44775840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 38
               

               Conread position:
               178-793
               

               Cow position:
               chr14:46530044-46529427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               639
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 134
               

               Conread position:
               179-793
               

               Cow position:
               chr14:751386-750778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 129
               

               Conread position:
               179-793
               

               Cow position:
               chr14:45671226-45671851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 121
               

               Conread position:
               181-536
               

               Cow position:
               chr14:9514468-9514831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               249
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               181-776
               

               Cow position:
               chr14:32447610-32447009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 130
               

               Conread position:
               181-779
               

               Cow position:
               chr14:11153333-11153952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 137
               

               Conread position:
               181-793
               

               Cow position:
               chr14:190786-190163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 104
               

               Conread position:
               182-772
               

               Cow position:
               chr14:37455248-37455825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 112
               

               Conread position:
               183-775
               

               Cow position:
               chr14:17686216-17685617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 117
               

               Conread position:
               183-793
               

               Cow position:
               chr14:15275416-15276032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 129
               

               Conread position:
               185-778
               

               Cow position:
               chr14:35424895-35424318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 98
               

               Conread position:
               185-793
               

               Cow position:
               chr14:33392983-33393582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               285, 32
               

               Conread position:
               186-693
               

               Cow position:
               chr14:33237834-33237324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 36
               

               Conread position:
               187-514
               

               Cow position:
               chr14:41409744-41409396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               64, 55
               

               Conread position:
               188-644
               

               Cow position:
               chr14:38147817-38147349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 29
               

               Conread position:
               188-767
               

               Cow position:
               chr14:23258168-23257581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 120
               
204-504UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr14:21744901-21744596 (view  custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 90
               
231-793UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:29705820-29705280 (view  custom track)

               
               
               
Alignm length: 569

               
               
               
Alignm identity: 379

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 288, 20
232-592UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:50139320-50138964 (view  custom track)

               
               
               
Alignm length: 365

               
               
               
Alignm identity: 244

               
               
               
Alignm E-value: 8.99999e-40

               
               
               
Alignm gaps (pig, cow): 229, 71

               
               
               Conread position:232-658
               
               
               Cow position:chr14:11561270-11561696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 77

               
               
               Conread position:232-688
               
               
               Cow position:chr14:40341812-40341357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 71

               
               
               Conread position:232-741
               
               
               Cow position:chr14:44676878-44676372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:232-775
               
               
               Cow position:chr14:48253553-48254085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 71

               
               
               Conread position:236-598
               
               
               Cow position:chr14:20909508-20909151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:237-641
               
               
               Cow position:chr14:38530708-38531107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 45

               
               
               Conread position:237-684
               
               
               Cow position:chr14:33489158-33488723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 63

               
               
               Conread position:237-760
               
               
               Cow position:chr14:44131639-44131129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 50

               
               
               Conread position:237-768
               
               
               Cow position:chr14:48601584-48602106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:238-501
               
               
               Cow position:chr14:37412992-37413251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:238-595
               
               
               Cow position:chr14:30705560-30705913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:238-767
               
               
               Cow position:chr14:13779691-13779181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 66

               
               
               Conread position:238-793
               
               
               Cow position:chr14:33402442-33401889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 243

               
               
               Conread position:240-790
               
               
               Cow position:chr14:47674580-47674043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:357
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):188, 60

               
               
               Conread position:262-619
               
               
               Cow position:chr14:48404241-48404593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 42

               
               
               Conread position:275-793
               
               
               Cow position:chr14:35385356-35385872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 29

               
               
               Conread position:276-489
               
               
               Cow position:chr14:33766838-33766632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:279-771
               
               
               Cow position:chr14:34776932-34776463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:339
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):51, 44

               
               
               Conread position:297-778
               
               
               Cow position:chr14:45189082-45189562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 5

               
               
               Conread position:298-595
               
               
               Cow position:chr14:13462276-13461988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 24

               
               
               Conread position:304-643
               
               
               Cow position:chr14:44689745-44689403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 172

               
               
               Conread position:350-780
               
               
               Cow position:chr14:48971322-48970889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:495-793
               
               
               Cow position:chr14:21744466-21744167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 285

               
               
               Conread position:544-760
               
               
               Cow position:chr14:30762751-30762971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:566-793
               
               
               Cow position:chr14:50111000-50110770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:170-771
               
               
               Cow position:chr15:4679090-4678525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:402
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:171-793
               
               
               Cow position:chr15:31783969-31784591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 143

               
               
               Conread position:174-760
               
               
               Cow position:chr15:5207717-5207125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:366
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):61, 135

               
               
               Conread position:174-789
               
               
               Cow position:chr15:47772967-47772354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 142

               
               
               Conread position:176-677
               
               
               Cow position:chr15:51218424-51217918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:176-793
               
               
               Cow position:chr15:1238493-1237880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 61

               
               
               Conread position:176-793
               
               
               Cow position:chr15:8100294-8099679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 124

               
               
               Conread position:177-413
               
               
               Cow position:chr15:4927198-4926963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:177-479
               
               
               Cow position:chr15:7982630-7982920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:177-490
               
               
               Cow position:chr15:38981552-38981234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 125

               
               
               Conread position:177-507
               
               
               Cow position:chr15:32712049-32711714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-507
               
               
               Cow position:chr15:35736617-35736278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):59, 138

               
               
               Conread position:177-513
               
               
               Cow position:chr15:8409698-8409356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):56, 104

               
               
               Conread position:177-579
               
               
               Cow position:chr15:17148947-17148545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 87

               
               
               Conread position:177-619
               
               
               Cow position:chr15:51675541-51675099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 143

               
               
               Conread position:177-662
               
               
               Cow position:chr15:2017386-2016900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:177-685
               
               
               Cow position:chr15:35752494-35753009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 122

               
               
               Conread position:177-690
               
               
               Cow position:chr15:11626511-11625996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 97

               
               
               Conread position:177-720
               
               
               Cow position:chr15:8751228-8750687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:177-764
               
               
               Cow position:chr15:6067353-6067945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:379
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 129

               
               
               Conread position:177-767
               
               
               Cow position:chr15:445439-444829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:177-767
               
               
               Cow position:chr15:3889716-3889106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:177-767
               
               
               Cow position:chr15:18267153-18267763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:177-768
               
               
               Cow position:chr15:524045-524634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:177-769
               
               
               Cow position:chr15:6155120-6155721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:177-771
               
               
               Cow position:chr15:499570-498967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:380
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:177-771
               
               
               Cow position:chr15:7235072-7234492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:381
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):132, 47

               
               
               Conread position:177-772
               
               
               Cow position:chr15:580255-579664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 70

               
               
               Conread position:177-772
               
               
               Cow position:chr15:21664918-21665526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 363

               
               
               Conread position:177-772
               
               
               Cow position:chr15:50123109-50123723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 317

               
               
               Conread position:177-775
               
               
               Cow position:chr15:4922970-4922372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 122

               
               
               Conread position:177-775
               
               
               Cow position:chr15:31359696-31359103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:177-779
               
               
               Cow position:chr15:2077480-2076862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 120

               
               
               Conread position:177-779
               
               
               Cow position:chr15:18332003-18332615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 136

               
               
               Conread position:177-779
               
               
               Cow position:chr15:18577537-18576928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 132

               
               
               Conread position:177-779
               
               
               Cow position:chr15:19737233-19737838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 78

               
               
               Conread position:177-786
               
               
               Cow position:chr15:814749-815363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 136

               
               
               Conread position:177-787
               
               
               Cow position:chr15:5981174-5980569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 122

               
               
               Conread position:177-789
               
               
               Cow position:chr15:6079577-6078955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr15:8811199-8811820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 136

               
               
               Conread position:177-793
               
               
               Cow position:chr15:15346288-15346916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:177-793
               
               
               Cow position:chr15:24295910-24295298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 47

               
               
               Conread position:177-793
               
               
               Cow position:chr15:35646852-35647463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 61

               
               
               Conread position:178-398
               
               
               Cow position:chr15:17684523-17684746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:178-495
               
               
               Cow position:chr15:51611169-51610852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:178-536
               
               
               Cow position:chr15:13391242-13391609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:178-663
               
               
               Cow position:chr15:36668573-36668068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 122

               
               
               Conread position:178-765
               
               
               Cow position:chr15:13675320-13674740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 88

               
               
               Conread position:178-793
               
               
               Cow position:chr15:4672261-4671636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:179-539
               
               
               Cow position:chr15:22378727-22378360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:179-772
               
               
               Cow position:chr15:4197285-4196681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:179-779
               
               
               Cow position:chr15:2646832-2647446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:179-785
               
               
               Cow position:chr15:20750213-20749593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:179-793
               
               
               Cow position:chr15:4141995-4142620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:180-605
               
               
               Cow position:chr15:28986218-28986644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):50, 118

               
               
               Conread position:181-387
               
               
               Cow position:chr15:2588632-2588844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:181-479
               
               
               Cow position:chr15:16595650-16595347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):55, 136

               
               
               Conread position:181-779
               
               
               Cow position:chr15:44070749-44070137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:182-530
               
               
               Cow position:chr15:4823287-4822944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:183-405
               
               
               Cow position:chr15:36392323-36392548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 126

               
               
               Conread position:184-565
               
               
               Cow position:chr15:2901650-2902042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 142

               
               
               Conread position:185-484
               
               
               Cow position:chr15:7892725-7893007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):133, 53

               
               
               Conread position:185-566
               
               
               Cow position:chr15:6485397-6485017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:186-789
               
               
               Cow position:chr15:9430754-9430144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:186-793
               
               
               Cow position:chr15:9003315-9003921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 43

               
               
               Conread position:187-769
               
               
               Cow position:chr15:7545676-7545105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:187-789
               
               
               Cow position:chr15:9738573-9739164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 77

               
               
               Conread position:190-403
               
               
               Cow position:chr15:4950866-4950658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:191-624
               
               
               Cow position:chr15:5952516-5952931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:212-745
               
               
               Cow position:chr15:6553052-6553575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:213-506
               
               
               Cow position:chr15:2013124-2012829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:231-792
               
               
               Cow position:chr15:35834179-35833627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:347
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:231-793
               
               
               Cow position:chr15:32719981-32720537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 73

               
               
               Conread position:232-532
               
               
               Cow position:chr15:21948491-21948784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):278, 40

               
               
               Conread position:232-556
               
               
               Cow position:chr15:6623969-6623657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):127, 58

               
               
               Conread position:232-688
               
               
               Cow position:chr15:6478904-6478470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):311, 38

               
               
               Conread position:232-769
               
               
               Cow position:chr15:4962398-4961868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 67

               
               
               Conread position:232-769
               
               
               Cow position:chr15:7838023-7837471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 487

               
               
               Conread position:232-769
               
               
               Cow position:chr15:36625508-36626046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 55

               
               
               Conread position:232-771
               
               
               Cow position:chr15:7965186-7965737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 81

               
               
               Conread position:232-792
               
               
               Cow position:chr15:17217498-17218060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:232-793
               
               
               Cow position:chr15:3260558-3261131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 70

               
               
               Conread position:237-466
               
               
               Cow position:chr15:6386585-6386812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:238-654
               
               
               Cow position:chr15:21450434-21450002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 199

               
               
               Conread position:238-760
               
               
               Cow position:chr15:9913452-9912920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 66

               
               
               Conread position:238-772
               
               
               Cow position:chr15:28489389-28489929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:261-793
               
               
               Cow position:chr15:1657995-1658525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 43

               
               
               Conread position:261-793
               
               
               Cow position:chr15:1668447-1667909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:363
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):280, 43

               
               
               Conread position:262-475
               
               
               Cow position:chr15:53409646-53409437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:262-767
               
               
               Cow position:chr15:17079469-17079979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:263-793
               
               
               Cow position:chr15:4813330-4812798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:279-775
               
               
               Cow position:chr15:53136506-53137004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 24

               
               
               Conread position:281-779
               
               
               Cow position:chr15:20356208-20356701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:286-789
               
               
               Cow position:chr15:8057997-8057500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 103

               
               
               Conread position:296-793
               
               
               Cow position:chr15:10889310-10888815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 16

               
               
               Conread position:301-539
               
               
               Cow position:chr15:43757273-43757035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):169, 24

               
               
               Conread position:303-775
               
               
               Cow position:chr15:32493694-32494168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 172

               
               
               Conread position:304-720
               
               
               Cow position:chr15:7261303-7260871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 288

               
               
               Conread position:304-772
               
               
               Cow position:chr15:2763352-2762898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):193, 66

               
               
               Conread position:314-793
               
               
               Cow position:chr15:315177-315657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 151

               
               
               Conread position:314-793
               
               
               Cow position:chr15:44829483-44828998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 396

               
               
               Conread position:325-793
               
               
               Cow position:chr15:1518483-1518952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 152

               
               
               Conread position:417-793
               
               
               Cow position:chr15:40106419-40106062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):126, 64

               
               
               Conread position:425-793
               
               
               Cow position:chr15:37393063-37392693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:448-761
               
               
               Cow position:chr15:24717634-24717319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:457-793
               
               
               Cow position:chr15:19818505-19818164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:1-180
               
               
               Cow position:chr16:5633484-5633308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 99

               
               
               Conread position:5-172
               
               
               Cow position:chr16:52589879-52589712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:174-467
               
               
               Cow position:chr16:46628409-46628120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 117

               
               
               Conread position:176-593
               
               
               Cow position:chr16:42185011-42185430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 84

               
               
               Conread position:176-720
               
               
               Cow position:chr16:18497816-18498363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 40

               
               
               Conread position:176-720
               
               
               Cow position:chr16:51084634-51084069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 539

               
               
               Conread position:177-379
               
               
               Cow position:chr16:3330419-3330210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 135

               
               
               Conread position:177-463
               
               
               Cow position:chr16:837798-837502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:177-463
               
               
               Cow position:chr16:15567737-15567444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-482
               
               
               Cow position:chr16:19151135-19151453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:177-484
               
               
               Cow position:chr16:26105579-26105892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:177-566
               
               
               Cow position:chr16:1860697-1860306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 131

               
               
               Conread position:177-567
               
               
               Cow position:chr16:49279914-49279528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:177-584
               
               
               Cow position:chr16:37481938-37482328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):333, 58

               
               
               Conread position:177-642
               
               
               Cow position:chr16:37480659-37481120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:177-693
               
               
               Cow position:chr16:15185553-15185031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-768
               
               
               Cow position:chr16:41162591-41163189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 47

               
               
               Conread position:177-769
               
               
               Cow position:chr16:1566974-1567573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 132

               
               
               Conread position:177-769
               
               
               Cow position:chr16:2410487-2411087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:177-772
               
               
               Cow position:chr16:5662310-5661720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 49

               
               
               Conread position:177-779
               
               
               Cow position:chr16:406559-407164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:177-779
               
               
               Cow position:chr16:14665328-14665942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:177-779
               
               
               Cow position:chr16:15477324-15476710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 136

               
               
               Conread position:177-779
               
               
               Cow position:chr16:23535409-23536020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-779
               
               
               Cow position:chr16:26664234-26663619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:177-788
               
               
               Cow position:chr16:10438733-10438098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 130

               
               
               Conread position:177-793
               
               
               Cow position:chr16:2482658-2483284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:177-793
               
               
               Cow position:chr16:4478489-4479127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 549

               
               
               Conread position:177-793
               
               
               Cow position:chr16:23983777-23983165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-793
               
               
               Cow position:chr16:25342439-25341814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 58

               
               
               Conread position:177-793
               
               
               Cow position:chr16:25442109-25441483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 120

               
               
               Conread position:177-793
               
               
               Cow position:chr16:25456996-25457608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 19

               
               
               Conread position:177-793
               
               
               Cow position:chr16:28470619-28471246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 136

               
               
               Conread position:177-793
               
               
               Cow position:chr16:29047504-29046878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr16:40295693-40296321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:178-498
               
               
               Cow position:chr16:3088725-3089048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:178-767
               
               
               Cow position:chr16:10375119-10375717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:178-772
               
               
               Cow position:chr16:25086097-25085496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 113

               
               
               Conread position:178-772
               
               
               Cow position:chr16:29034544-29033930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 323

               
               
               Conread position:178-793
               
               
               Cow position:chr16:31591436-31592057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 121

               
               
               Conread position:179-533
               
               
               Cow position:chr16:27593986-27593625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:179-699
               
               
               Cow position:chr16:25189127-25188596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 129

               
               
               Conread position:179-793
               
               
               Cow position:chr16:21186094-21185473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:181-491
               
               
               Cow position:chr16:26978617-26978300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 139

               
               
               Conread position:181-652
               
               
               Cow position:chr16:23251960-23252437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 128

               
               
               Conread position:181-789
               
               
               Cow position:chr16:1432668-1432050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:181-793
               
               
               Cow position:chr16:8815627-8816249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 118

               
               
               Conread position:182-510
               
               
               Cow position:chr16:27714335-27714652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:182-663
               
               
               Cow position:chr16:12668297-12668772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:184-728
               
               
               Cow position:chr16:44867040-44867573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:343
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:185-509
               
               
               Cow position:chr16:10565298-10565617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 41

               
               
               Conread position:190-793
               
               
               Cow position:chr16:25081255-25080672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:389
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):319, 57

               
               
               Conread position:191-647
               
               
               Cow position:chr16:51405494-51405933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:199-662
               
               
               Cow position:chr16:25739115-25738674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:201-662
               
               
               Cow position:chr16:16270690-16271152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:206-793
               
               
               Cow position:chr16:34530769-34530178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:231-788
               
               
               Cow position:chr16:12537508-12538063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 72

               
               
               Conread position:232-425
               
               
               Cow position:chr16:49234214-49234403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:232-652
               
               
               Cow position:chr16:15493921-15493500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 70

               
               
               Conread position:232-792
               
               
               Cow position:chr16:37455602-37456169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 71

               
               
               Conread position:237-771
               
               
               Cow position:chr16:25171760-25171229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 63

               
               
               Conread position:238-476
               
               
               Cow position:chr16:41570700-41570456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:238-476
               
               
               Cow position:chr16:41755049-41755281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):141, 61

               
               
               Conread position:238-494
               
               
               Cow position:chr16:56916656-56916906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:238-793
               
               
               Cow position:chr16:28169948-28170516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 247

               
               
               Conread position:240-573
               
               
               Cow position:chr16:23801712-23802035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):249, 20

               
               
               Conread position:242-501
               
               
               Cow position:chr16:52888312-52888061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:276-780
               
               
               Cow position:chr16:20133719-20134217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:325
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:276-789
               
               
               Cow position:chr16:33923788-33924289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:330
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):209, 32

               
               
               Conread position:279-793
               
               
               Cow position:chr16:2726918-2727431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 14

               
               
               Conread position:281-579
               
               
               Cow position:chr16:54697082-54696781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):158, 7

               
               
               Conread position:295-793
               
               
               Cow position:chr16:45798917-45798425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 27

               
               
               Conread position:296-793
               
               
               Cow position:chr16:25258309-25257792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:303-667
               
               
               Cow position:chr16:46707017-46707385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 22

               
               
               Conread position:306-776
               
               
               Cow position:chr16:46500558-46500088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:306
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:316-793
               
               
               Cow position:chr16:11283648-11283165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 164

               
               
               Conread position:320-771
               
               
               Cow position:chr16:28437058-28437507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 193

               
               
               Conread position:329-715
               
               
               Cow position:chr16:25255786-25255399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 60

               
               
               Conread position:350-775
               
               
               Cow position:chr16:41166467-41166897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 359

               
               
               Conread position:373-770
               
               
               Cow position:chr16:30049766-30049363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:395-793
               
               
               Cow position:chr16:52591850-52592242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 80

               
               
               Conread position:427-775
               
               
               Cow position:chr16:10203225-10203565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:469-780
               
               
               Cow position:chr16:837234-836911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:579-771
               
               
               Cow position:chr16:20752958-20753155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:170-616
               
               
               Cow position:chr17:13990292-13990738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:309
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:170-770
               
               
               Cow position:chr17:18194866-18194278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 121

               
               
               Conread position:174-767
               
               
               Cow position:chr17:2247032-2247614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 25

               
               
               Conread position:176-537
               
               
               Cow position:chr17:16121500-16121833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:177-422
               
               
               Cow position:chr17:22133251-22133003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):141, 181

               
               
               Conread position:177-475
               
               
               Cow position:chr17:7942015-7942309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:177-490
               
               
               Cow position:chr17:15372280-15371960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):58, 118

               
               
               Conread position:177-500
               
               
               Cow position:chr17:6611435-6611764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:177-501
               
               
               Cow position:chr17:239390-239067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:177-555
               
               
               Cow position:chr17:14240552-14240167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:177-574
               
               
               Cow position:chr17:36945-36548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:177-611
               
               
               Cow position:chr17:22559022-22558597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 132

               
               
               Conread position:177-767
               
               
               Cow position:chr17:6120768-6120165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:177-767
               
               
               Cow position:chr17:15436834-15436245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 57

               
               
               Conread position:177-768
               
               
               Cow position:chr17:19267774-19268378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 136

               
               
               Conread position:177-769
               
               
               Cow position:chr17:4061150-4060557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-769
               
               
               Cow position:chr17:5227677-5227074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:177-769
               
               
               Cow position:chr17:20080819-20081405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:177-769
               
               
               Cow position:chr17:20403484-20402878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:177-769
               
               
               Cow position:chr17:24028950-24029551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 135

               
               
               Conread position:177-771
               
               
               Cow position:chr17:3707726-3708328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:177-772
               
               
               Cow position:chr17:23323400-23324005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:177-772
               
               
               Cow position:chr17:34157172-34156577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-772
               
               
               Cow position:chr17:43989554-43988949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:177-774
               
               
               Cow position:chr17:1881154-1880549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 137

               
               
               Conread position:177-775
               
               
               Cow position:chr17:40805860-40805262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:177-779
               
               
               Cow position:chr17:2263160-2262542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:177-793
               
               
               Cow position:chr17:6260913-6260277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 147

               
               
               Conread position:177-793
               
               
               Cow position:chr17:11086674-11087292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 129

               
               
               Conread position:177-793
               
               
               Cow position:chr17:14215975-14216605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr17:14895225-14894588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:177-793
               
               
               Cow position:chr17:15324882-15324256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:177-793
               
               
               Cow position:chr17:16856466-16857091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr17:20086712-20087313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 59

               
               
               Conread position:178-401
               
               
               Cow position:chr17:21418624-21418404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:178-549
               
               
               Cow position:chr17:1703644-1704018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:178-583
               
               
               Cow position:chr17:31533261-31532867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:178-762
               
               
               Cow position:chr17:24783213-24782618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:178-772
               
               
               Cow position:chr17:15142304-15142918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:179-711
               
               
               Cow position:chr17:1786889-1787413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 133

               
               
               Conread position:179-745
               
               
               Cow position:chr17:3655243-3655819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:179-793
               
               
               Cow position:chr17:31766989-31767611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:201-772
               
               
               Cow position:chr17:8210134-8209556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 102

               
               
               Conread position:205-486
               
               
               Cow position:chr17:2091784-2092064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:232-749
               
               
               Cow position:chr17:13705534-13705030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 70

               
               
               Conread position:232-769
               
               
               Cow position:chr17:2580611-2580074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:232-769
               
               
               Cow position:chr17:20099483-20100022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 30

               
               
               Conread position:232-772
               
               
               Cow position:chr17:20488929-20488398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 58

               
               
               Conread position:232-793
               
               
               Cow position:chr17:4083002-4082482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:375
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):304, 15

               
               
               Conread position:236-473
               
               
               Cow position:chr17:11689443-11689194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:237-576
               
               
               Cow position:chr17:54464-54807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:238-761
               
               
               Cow position:chr17:1656866-1657389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 64

               
               
               Conread position:238-793
               
               
               Cow position:chr17:3641850-3642400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 65

               
               
               Conread position:238-793
               
               
               Cow position:chr17:11783823-11783275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 53

               
               
               Conread position:238-793
               
               
               Cow position:chr17:19020556-19020002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 77

               
               
               Conread position:239-671
               
               
               Cow position:chr17:2031107-2030671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 61

               
               
               Conread position:241-784
               
               
               Cow position:chr17:14910491-14911028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:348
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):140, 31

               
               
               Conread position:242-770
               
               
               Cow position:chr17:16899332-16899840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:352
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):295, 27

               
               
               Conread position:257-793
               
               
               Cow position:chr17:38874596-38874048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 47

               
               
               Conread position:263-549
               
               
               Cow position:chr17:150937-151224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 41

               
               
               Conread position:270-658
               
               
               Cow position:chr17:42265912-42265531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):226, 32

               
               
               Conread position:272-599
               
               
               Cow position:chr17:9813446-9813116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):233, 31

               
               
               Conread position:305-793
               
               
               Cow position:chr17:15156052-15156538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 9

               
               
               Conread position:315-793
               
               
               Cow position:chr17:227403-227880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 45

               
               
               Conread position:325-783
               
               
               Cow position:chr17:43114234-43114686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):145, 106

               
               
               Conread position:468-764
               
               
               Cow position:chr17:21417767-21417467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:520-784
               
               
               Cow position:chr17:2092062-2092319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:532-793
               
               
               Cow position:chr17:18299703-18299966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 122

               
               
               Conread position:578-771
               
               
               Cow position:chr17:151229-151421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):54, 128

               
               
               Conread position:633-793
               
               
               Cow position:chr17:11026211-11026369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 73

               
               
               Conread position:171-793
               
               
               Cow position:chr18:54271750-54271141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:174-564
               
               
               Cow position:chr18:15850685-15850310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:174-788
               
               
               Cow position:chr18:41839547-41840166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:175-775
               
               
               Cow position:chr18:16089400-16088801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 5

               
               
               Conread position:176-793
               
               
               Cow position:chr18:40479657-40479025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 136

               
               
               Conread position:177-421
               
               
               Cow position:chr18:56013840-56013588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:177-522
               
               
               Cow position:chr18:38343030-38343370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):261, 35

               
               
               Conread position:177-543
               
               
               Cow position:chr18:54004909-54005281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:177-647
               
               
               Cow position:chr18:51482132-51481670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:177-671
               
               
               Cow position:chr18:36255662-36256139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 59

               
               
               Conread position:177-693
               
               
               Cow position:chr18:37507220-37506697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 125

               
               
               Conread position:177-767
               
               
               Cow position:chr18:11273854-11274444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 57

               
               
               Conread position:177-767
               
               
               Cow position:chr18:16079933-16079333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-767
               
               
               Cow position:chr18:29074250-29073673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:389
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):56, 82

               
               
               Conread position:177-767
               
               
               Cow position:chr18:51342949-51342348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-775
               
               
               Cow position:chr18:14131656-14131051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 123

               
               
               Conread position:177-775
               
               
               Cow position:chr18:16175356-16175962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-775
               
               
               Cow position:chr18:52652172-52651571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-779
               
               
               Cow position:chr18:40081148-40081741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:384
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):49, 142

               
               
               Conread position:177-779
               
               
               Cow position:chr18:51274784-51275385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:177-783
               
               
               Cow position:chr18:16869675-16869052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:177-793
               
               
               Cow position:chr18:14417242-14416621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 125

               
               
               Conread position:177-793
               
               
               Cow position:chr18:36509605-36508975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:178-438
               
               
               Cow position:chr18:44402962-44402698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 133

               
               
               Conread position:178-772
               
               
               Cow position:chr18:33142513-33141914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 120

               
               
               Conread position:178-775
               
               
               Cow position:chr18:27837048-27837658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 122

               
               
               Conread position:179-767
               
               
               Cow position:chr18:51661602-51661007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 91

               
               
               Conread position:180-767
               
               
               Cow position:chr18:19353620-19353033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 131

               
               
               Conread position:181-775
               
               
               Cow position:chr18:23798905-23798302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:181-775
               
               
               Cow position:chr18:29238155-29237597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:392
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:182-793
               
               
               Cow position:chr18:20692917-20693526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:381
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):41, 83

               
               
               Conread position:185-550
               
               
               Cow position:chr18:47742757-47742388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:205-758
               
               
               Cow position:chr18:37489743-37489218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:358
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:211-413
               
               
               Cow position:chr18:34042676-34042478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:211-529
               
               
               Cow position:chr18:15856456-15856149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 31

               
               
               Conread position:231-789
               
               
               Cow position:chr18:17197211-17197769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:357
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 70

               
               
               Conread position:231-793
               
               
               Cow position:chr18:28972684-28973247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 72

               
               
               Conread position:232-781
               
               
               Cow position:chr18:51239485-51238949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 72

               
               
               Conread position:232-793
               
               
               Cow position:chr18:32653417-32652853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 71

               
               
               Conread position:238-769
               
               
               Cow position:chr18:25364393-25363880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:350
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):223, 37

               
               
               Conread position:239-793
               
               
               Cow position:chr18:33952389-33952941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 61

               
               
               Conread position:263-468
               
               
               Cow position:chr18:45946679-45946881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:280-682
               
               
               Cow position:chr18:32768808-32768408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 23

               
               
               Conread position:315-793
               
               
               Cow position:chr18:54170416-54170896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 153

               
               
               Conread position:316-772
               
               
               Cow position:chr18:33269939-33269488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 193

               
               
               Conread position:324-789
               
               
               Cow position:chr18:33751120-33750658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 89

               
               
               Conread position:555-793
               
               
               Cow position:chr18:51276134-51276367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:669-788
               
               
               Cow position:chr18:15856155-15856033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-159
               
               
               Cow position:chr19:354581-354419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:177-440
               
               
               Cow position:chr19:892359-892626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:177-507
               
               
               Cow position:chr19:5730137-5729804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-514
               
               
               Cow position:chr19:167292-167646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 165

               
               
               Conread position:177-533
               
               
               Cow position:chr19:173522-173137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:177-534
               
               
               Cow position:chr19:11521901-11522262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 113

               
               
               Conread position:177-624
               
               
               Cow position:chr19:1656694-1656230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 130

               
               
               Conread position:177-641
               
               
               Cow position:chr19:28594815-28594344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:177-691
               
               
               Cow position:chr19:135525-136047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:177-751
               
               
               Cow position:chr19:39565-38978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 47

               
               
               Conread position:177-765
               
               
               Cow position:chr19:7070569-7069984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:177-767
               
               
               Cow position:chr19:7343334-7342733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-767
               
               
               Cow position:chr19:33874692-33874092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:177-771
               
               
               Cow position:chr19:32181810-32182421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 143

               
               
               Conread position:177-772
               
               
               Cow position:chr19:20105992-20105374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 133

               
               
               Conread position:177-772
               
               
               Cow position:chr19:32210809-32211412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 57

               
               
               Conread position:177-788
               
               
               Cow position:chr19:4386880-4386273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 132

               
               
               Conread position:177-788
               
               
               Cow position:chr19:39184275-39184892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 131

               
               
               Conread position:177-793
               
               
               Cow position:chr19:12774378-12773758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-793
               
               
               Cow position:chr19:39391775-39391151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:178-685
               
               
               Cow position:chr19:9706896-9707381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 56

               
               
               Conread position:179-742
               
               
               Cow position:chr19:32194290-32193705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:179-772
               
               
               Cow position:chr19:773864-773256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:180-719
               
               
               Cow position:chr19:3113515-3112979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:369
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:181-775
               
               
               Cow position:chr19:438178-438777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 116

               
               
               Conread position:182-459
               
               
               Cow position:chr19:48860951-48861225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:182-498
               
               
               Cow position:chr19:51673850-51674162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):25, 129

               
               
               Conread position:185-412
               
               
               Cow position:chr19:30756477-30756238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 139

               
               
               Conread position:187-468
               
               
               Cow position:chr19:52842811-52842536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:229-491
               
               
               Cow position:chr19:39096354-39096101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):93, 183

               
               
               Conread position:231-793
               
               
               Cow position:chr19:3139135-3138582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 68

               
               
               Conread position:232-466
               
               
               Cow position:chr19:28367213-28366987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:232-498
               
               
               Cow position:chr19:31441712-31441449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:232-526
               
               
               Cow position:chr19:35384410-35384698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):246, 65

               
               
               Conread position:232-769
               
               
               Cow position:chr19:28580460-28580994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 71

               
               
               Conread position:232-769
               
               
               Cow position:chr19:40851247-40851769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 71

               
               
               Conread position:232-775
               
               
               Cow position:chr19:2273182-2273720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 59

               
               
               Conread position:232-779
               
               
               Cow position:chr19:205186-204614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 72

               
               
               Conread position:232-792
               
               
               Cow position:chr19:11952514-11951948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:358
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):280, 77

               
               
               Conread position:232-793
               
               
               Cow position:chr19:28405502-28406064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 48

               
               
               Conread position:232-793
               
               
               Cow position:chr19:33942813-33942245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 59

               
               
               Conread position:245-484
               
               
               Cow position:chr19:35379772-35379544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:262-496
               
               
               Cow position:chr19:24834842-24835078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):145, 41

               
               
               Conread position:262-764
               
               
               Cow position:chr19:347155-347650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 145

               
               
               Conread position:263-685
               
               
               Cow position:chr19:5027897-5028321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 41

               
               
               Conread position:277-590
               
               
               Cow position:chr19:55926292-55926598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:297-688
               
               
               Cow position:chr19:190521-190120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:300-793
               
               
               Cow position:chr19:40886608-40887102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 14

               
               
               Conread position:316-767
               
               
               Cow position:chr19:52150712-52151164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 131

               
               
               Conread position:329-485
               
               
               Cow position:chr19:1489920-1490073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:392-763
               
               
               Cow position:chr19:32204190-32203817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 239

               
               
               Conread position:457-769
               
               
               Cow position:chr19:892622-892938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 204

               
               
               Conread position:513-793
               
               
               Cow position:chr19:5729753-5729476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:520-789
               
               
               Cow position:chr19:35384831-35385103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):26, 257

               
               
               Conread position:168-562
               
               
               Cow position:chr2:27318014-27317631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:170-721
               
               
               Cow position:chr2:36052296-36052855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 143

               
               
               Conread position:170-792
               
               
               Cow position:chr2:4926703-4927309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:408
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:172-593
               
               
               Cow position:chr2:38013360-38012938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 64

               
               
               Conread position:174-772
               
               
               Cow position:chr2:14823794-14823212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:174-793
               
               
               Cow position:chr2:64580187-64580802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:176-514
               
               
               Cow position:chr2:49628316-49627973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:177-462
               
               
               Cow position:chr2:174851-175146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:177-462
               
               
               Cow position:chr2:574301-574010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:177-474
               
               
               Cow position:chr2:2381791-2381485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:177-528
               
               
               Cow position:chr2:63291262-63291616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:177-595
               
               
               Cow position:chr2:16291158-16290744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 112

               
               
               Conread position:177-613
               
               
               Cow position:chr2:81257876-81257437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 60

               
               
               Conread position:177-624
               
               
               Cow position:chr2:211550-212006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:307
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 136

               
               
               Conread position:177-641
               
               
               Cow position:chr2:25028584-25029048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:177-643
               
               
               Cow position:chr2:5869673-5870149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 97

               
               
               Conread position:177-683
               
               
               Cow position:chr2:78743291-78742780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 127

               
               
               Conread position:177-689
               
               
               Cow position:chr2:24925273-24924749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:177-693
               
               
               Cow position:chr2:28648894-28649416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 131

               
               
               Conread position:177-701
               
               
               Cow position:chr2:28640136-28640674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:177-710
               
               
               Cow position:chr2:9958359-9958905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-740
               
               
               Cow position:chr2:54738199-54737618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 315

               
               
               Conread position:177-750
               
               
               Cow position:chr2:289074-289653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 139

               
               
               Conread position:177-767
               
               
               Cow position:chr2:3789146-3789716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 54

               
               
               Conread position:177-767
               
               
               Cow position:chr2:36029662-36030250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:177-767
               
               
               Cow position:chr2:47037726-47038306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 57

               
               
               Conread position:177-767
               
               
               Cow position:chr2:52617183-52616578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-767
               
               
               Cow position:chr2:67420240-67420837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:177-769
               
               
               Cow position:chr2:10185520-10186123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 59

               
               
               Conread position:177-769
               
               
               Cow position:chr2:13045005-13045598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 135

               
               
               Conread position:177-769
               
               
               Cow position:chr2:16900967-16900358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-769
               
               
               Cow position:chr2:44990594-44991185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:177-772
               
               
               Cow position:chr2:2087458-2088070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 49

               
               
               Conread position:177-772
               
               
               Cow position:chr2:5484300-5484872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:177-772
               
               
               Cow position:chr2:8119252-8118645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:177-772
               
               
               Cow position:chr2:10610938-10611528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 57

               
               
               Conread position:177-772
               
               
               Cow position:chr2:51617961-51617360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 186

               
               
               Conread position:177-772
               
               
               Cow position:chr2:59412985-59413578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:177-775
               
               
               Cow position:chr2:19012062-19011447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 136

               
               
               Conread position:177-779
               
               
               Cow position:chr2:45918847-45919466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:177-779
               
               
               Cow position:chr2:47811556-47810941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 131

               
               
               Conread position:177-779
               
               
               Cow position:chr2:50078295-50077696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 47

               
               
               Conread position:177-787
               
               
               Cow position:chr2:3832481-3833089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:414
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:177-791
               
               
               Cow position:chr2:1691677-1691057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:177-793
               
               
               Cow position:chr2:281983-282604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 133

               
               
               Conread position:177-793
               
               
               Cow position:chr2:53330470-53329843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 135

               
               
               Conread position:178-498
               
               
               Cow position:chr2:33088824-33088503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:178-501
               
               
               Cow position:chr2:16283045-16282731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:178-647
               
               
               Cow position:chr2:13481961-13482437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:329
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):80, 58

               
               
               Conread position:178-767
               
               
               Cow position:chr2:41657883-41657283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 124

               
               
               Conread position:178-788
               
               
               Cow position:chr2:11158415-11159032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 134

               
               
               Conread position:178-789
               
               
               Cow position:chr2:4402451-4403071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:178-793
               
               
               Cow position:chr2:3834258-3834876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:179-491
               
               
               Cow position:chr2:12516484-12516792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:179-584
               
               
               Cow position:chr2:44934274-44934660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:179-667
               
               
               Cow position:chr2:2355734-2356233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:179-772
               
               
               Cow position:chr2:9908620-9908016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:179-793
               
               
               Cow position:chr2:364362-364977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 55

               
               
               Conread position:179-793
               
               
               Cow position:chr2:3323855-3324478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:180-776
               
               
               Cow position:chr2:5888941-5889523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:387
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:181-660
               
               
               Cow position:chr2:42670001-42670490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:181-683
               
               
               Cow position:chr2:35356721-35356188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 131

               
               
               Conread position:181-793
               
               
               Cow position:chr2:24147567-24146947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:182-755
               
               
               Cow position:chr2:39422327-39421740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:184-682
               
               
               Cow position:chr2:44649981-44649494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:342
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:185-503
               
               
               Cow position:chr2:40453606-40453293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:185-682
               
               
               Cow position:chr2:78763347-78762846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:186-793
               
               
               Cow position:chr2:15576139-15576751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:187-771
               
               
               Cow position:chr2:43961394-43960811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:191-771
               
               
               Cow position:chr2:14777167-14777720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:191-787
               
               
               Cow position:chr2:66307427-66308020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 36

               
               
               Conread position:203-754
               
               
               Cow position:chr2:32656334-32655790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:231-479
               
               
               Cow position:chr2:3970634-3970390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:232-595
               
               
               Cow position:chr2:55483501-55483846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):332, 79

               
               
               Conread position:232-647
               
               
               Cow position:chr2:5903674-5904090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 72

               
               
               Conread position:232-754
               
               
               Cow position:chr2:74857860-74857344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 34

               
               
               Conread position:232-788
               
               
               Cow position:chr2:22078433-22077872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 72

               
               
               Conread position:232-793
               
               
               Cow position:chr2:7903679-7903121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:232-793
               
               
               Cow position:chr2:36981025-36980463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:232-793
               
               
               Cow position:chr2:41173312-41172753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 58

               
               
               Conread position:238-464
               
               
               Cow position:chr2:36277752-36277975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:238-490
               
               
               Cow position:chr2:51998281-51998538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:238-520
               
               
               Cow position:chr2:46617070-46616814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):206, 24

               
               
               Conread position:240-498
               
               
               Cow position:chr2:2451828-2451578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-640
               
               
               Cow position:chr2:46931849-46932246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 34

               
               
               Conread position:262-444
               
               
               Cow position:chr2:766878-767068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:262-643
               
               
               Cow position:chr2:45964503-45964884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 7

               
               
               Conread position:274-574
               
               
               Cow position:chr2:64769087-64769389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:275-792
               
               
               Cow position:chr2:29030732-29030233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 11

               
               
               Conread position:276-769
               
               
               Cow position:chr2:80292360-80292846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 27

               
               
               Conread position:277-663
               
               
               Cow position:chr2:62794940-62794561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:280-793
               
               
               Cow position:chr2:73193698-73193198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 23

               
               
               Conread position:281-776
               
               
               Cow position:chr2:10732165-10732673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 430

               
               
               Conread position:289-779
               
               
               Cow position:chr2:780856-781344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:302-775
               
               
               Cow position:chr2:12223736-12224202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 12

               
               
               Conread position:304-483
               
               
               Cow position:chr2:194970-195146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:318-772
               
               
               Cow position:chr2:57335758-57335299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 323

               
               
               Conread position:343-752
               
               
               Cow position:chr2:5862171-5862590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):176, 264

               
               
               Conread position:378-793
               
               
               Cow position:chr2:81750615-81751028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):6, 249

               
               
               Conread position:427-747
               
               
               Cow position:chr2:45967536-45967846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:447-779
               
               
               Cow position:chr2:36992681-36992340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 265

               
               
               Conread position:502-767
               
               
               Cow position:chr2:16281674-16281418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 43

               
               
               Conread position:523-772
               
               
               Cow position:chr2:63291745-63291996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:538-762
               
               
               Cow position:chr2:20920082-20920301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:171-765
               
               
               Cow position:chr20:19355991-19355406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:177-403
               
               
               Cow position:chr20:13663828-13664051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 47

               
               
               Conread position:177-501
               
               
               Cow position:chr20:5229288-5229611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 104

               
               
               Conread position:177-530
               
               
               Cow position:chr20:5466261-5465915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):45, 136

               
               
               Conread position:177-681
               
               
               Cow position:chr20:19050325-19050826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:177-745
               
               
               Cow position:chr20:32349494-32348917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 157

               
               
               Conread position:177-748
               
               
               Cow position:chr20:18314120-18314692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 263

               
               
               Conread position:177-767
               
               
               Cow position:chr20:823997-823388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:177-767
               
               
               Cow position:chr20:19439141-19438553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 133

               
               
               Conread position:177-771
               
               
               Cow position:chr20:10839499-10840087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:177-775
               
               
               Cow position:chr20:12569748-12569140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:177-775
               
               
               Cow position:chr20:27870430-27869822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 125

               
               
               Conread position:177-775
               
               
               Cow position:chr20:28564356-28564972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:177-779
               
               
               Cow position:chr20:8216739-8216135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:177-779
               
               
               Cow position:chr20:15293216-15292619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 47

               
               
               Conread position:177-793
               
               
               Cow position:chr20:5536163-5535539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 156

               
               
               Conread position:177-793
               
               
               Cow position:chr20:13678820-13679439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:177-793
               
               
               Cow position:chr20:13764128-13763508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:177-793
               
               
               Cow position:chr20:14869731-14870348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 127

               
               
               Conread position:178-700
               
               
               Cow position:chr20:10101474-10102003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:178-767
               
               
               Cow position:chr20:8973594-8974189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:178-793
               
               
               Cow position:chr20:37581440-37580812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:181-454
               
               
               Cow position:chr20:27896829-27897102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):11, 103

               
               
               Conread position:181-793
               
               
               Cow position:chr20:23468440-23469062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 131

               
               
               Conread position:181-793
               
               
               Cow position:chr20:35125716-35125100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 131

               
               
               Conread position:182-793
               
               
               Cow position:chr20:29949739-29949103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 547

               
               
               Conread position:184-661
               
               
               Cow position:chr20:7083192-7083674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 116

               
               
               Conread position:185-499
               
               
               Cow position:chr20:5791557-5791257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):73, 51

               
               
               Conread position:185-787
               
               
               Cow position:chr20:35106010-35105368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 462

               
               
               Conread position:188-793
               
               
               Cow position:chr20:38351887-38351273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:190-793
               
               
               Cow position:chr20:10854135-10854748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:192-793
               
               
               Cow position:chr20:15096672-15097274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 9

               
               
               Conread position:199-772
               
               
               Cow position:chr20:19884671-19884105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:231-787
               
               
               Cow position:chr20:2399797-2399242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:365
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:232-477
               
               
               Cow position:chr20:20410392-20410627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:232-658
               
               
               Cow position:chr20:28304050-28303634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):127, 73

               
               
               Conread position:237-647
               
               
               Cow position:chr20:21395089-21394675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:239-596
               
               
               Cow position:chr20:871831-872162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 65

               
               
               Conread position:239-758
               
               
               Cow position:chr20:24615710-24616233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 60

               
               
               Conread position:262-677
               
               
               Cow position:chr20:31497965-31498373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 42

               
               
               Conread position:262-793
               
               
               Cow position:chr20:13433469-13433985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 147

               
               
               Conread position:266-681
               
               
               Cow position:chr20:16105410-16105827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 36

               
               
               Conread position:330-766
               
               
               Cow position:chr20:9127665-9128096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):184, 60

               
               
               Conread position:350-775
               
               
               Cow position:chr20:21915366-21914937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 117

               
               
               Conread position:417-769
               
               
               Cow position:chr20:37442316-37442681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 140

               
               
               Conread position:168-760
               
               
               Cow position:chr21:37149384-37148785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:177-465
               
               
               Cow position:chr21:30598141-30598428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:177-473
               
               
               Cow position:chr21:2673665-2673968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:177-652
               
               
               Cow position:chr21:23297488-23297955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:177-685
               
               
               Cow position:chr21:27069625-27070145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 120

               
               
               Conread position:177-693
               
               
               Cow position:chr21:33253521-33252991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-767
               
               
               Cow position:chr21:39426400-39425803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 119

               
               
               Conread position:177-769
               
               
               Cow position:chr21:1193094-1192498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 106

               
               
               Conread position:177-771
               
               
               Cow position:chr21:218366-217790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:177-775
               
               
               Cow position:chr21:2882399-2883006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-776
               
               
               Cow position:chr21:10851425-10850811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:177-779
               
               
               Cow position:chr21:147265-146656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:177-789
               
               
               Cow position:chr21:21943425-21944044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:177-793
               
               
               Cow position:chr21:5839924-5840550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 131

               
               
               Conread position:177-793
               
               
               Cow position:chr21:18817207-18817843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 392

               
               
               Conread position:177-793
               
               
               Cow position:chr21:21916027-21915404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 248

               
               
               Conread position:177-793
               
               
               Cow position:chr21:37372577-37371961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:177-793
               
               
               Cow position:chr21:40270333-40270958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:178-510
               
               
               Cow position:chr21:42914702-42914367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:178-770
               
               
               Cow position:chr21:3780108-3779506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:178-793
               
               
               Cow position:chr21:39088336-39087721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:179-367
               
               
               Cow position:chr21:7063839-7063657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:179-452
               
               
               Cow position:chr21:27036062-27036341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 121

               
               
               Conread position:179-793
               
               
               Cow position:chr21:12054681-12055285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 55

               
               
               Conread position:181-391
               
               
               Cow position:chr21:4716350-4716138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:181-568
               
               
               Cow position:chr21:3169726-3169339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:181-793
               
               
               Cow position:chr21:25782973-25782356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 137

               
               
               Conread position:182-510
               
               
               Cow position:chr21:34822878-34823211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:182-767
               
               
               Cow position:chr21:11506945-11506337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:186-689
               
               
               Cow position:chr21:360991-360462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 526

               
               
               Conread position:187-472
               
               
               Cow position:chr21:36979587-36979873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:187-556
               
               
               Cow position:chr21:2512176-2511796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 94

               
               
               Conread position:189-767
               
               
               Cow position:chr21:30400-29821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 117

               
               
               Conread position:204-476
               
               
               Cow position:chr21:28985418-28985152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:204-695
               
               
               Cow position:chr21:1688852-1689346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 24

               
               
               Conread position:231-468
               
               
               Cow position:chr21:45786153-45786389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):120, 73

               
               
               Conread position:231-483
               
               
               Cow position:chr21:45782760-45782510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:232-489
               
               
               Cow position:chr21:26836174-26835913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:232-501
               
               
               Cow position:chr21:45491325-45491060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):147, 19

               
               
               Conread position:232-593
               
               
               Cow position:chr21:5018391-5018031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:232-660
               
               
               Cow position:chr21:31515041-31515477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 385

               
               
               Conread position:232-769
               
               
               Cow position:chr21:4588705-4589250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 169

               
               
               Conread position:232-793
               
               
               Cow position:chr21:2417491-2416930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:235-688
               
               
               Cow position:chr21:49325732-49325289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 36

               
               
               Conread position:238-453
               
               
               Cow position:chr21:29625473-29625685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:238-466
               
               
               Cow position:chr21:24085353-24085577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:238-793
               
               
               Cow position:chr21:37046891-37046336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 64

               
               
               Conread position:241-789
               
               
               Cow position:chr21:1075336-1074794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:343
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:242-791
               
               
               Cow position:chr21:2901021-2900467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:343
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):140, 58

               
               
               Conread position:259-750
               
               
               Cow position:chr21:38806072-38806546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):234, 34

               
               
               Conread position:262-700
               
               
               Cow position:chr21:13314002-13313571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 49

               
               
               Conread position:262-793
               
               
               Cow position:chr21:10567914-10567389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 41

               
               
               Conread position:263-779
               
               
               Cow position:chr21:46916921-46916400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 38

               
               
               Conread position:266-620
               
               
               Cow position:chr21:34001439-34001785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):244, 29

               
               
               Conread position:274-536
               
               
               Cow position:chr21:6625007-6624747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:304-793
               
               
               Cow position:chr21:1287011-1287504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 22

               
               
               Conread position:309-793
               
               
               Cow position:chr21:4078037-4077550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:315-720
               
               
               Cow position:chr21:37718822-37719231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 231

               
               
               Conread position:318-741
               
               
               Cow position:chr21:20743387-20743807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 63

               
               
               Conread position:325-501
               
               
               Cow position:chr21:28613281-28613106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:350-691
               
               
               Cow position:chr21:27566800-27566463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 130

               
               
               Conread position:393-793
               
               
               Cow position:chr21:25625759-25625360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 66

               
               
               Conread position:397-793
               
               
               Cow position:chr21:47941973-47941572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 295

               
               
               Conread position:458-745
               
               
               Cow position:chr21:26743133-26743416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 182

               
               
               Conread position:471-769
               
               
               Cow position:chr21:30598880-30599184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 200

               
               
               Conread position:522-772
               
               
               Cow position:chr21:6622581-6622327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:539-793
               
               
               Cow position:chr21:2502842-2502586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 52

               
               
               Conread position:545-793
               
               
               Cow position:chr21:10283826-10283583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:174-485
               
               
               Cow position:chr22:45510370-45510674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:176-792
               
               
               Cow position:chr22:2394820-2395453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 86

               
               
               Conread position:176-792
               
               
               Cow position:chr22:9045300-9044695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 140

               
               
               Conread position:176-793
               
               
               Cow position:chr22:12730518-12731126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:176-793
               
               
               Cow position:chr22:15312781-15313407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:177-349
               
               
               Cow position:chr22:45582086-45581916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:177-379
               
               
               Cow position:chr22:30677519-30677723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:177-585
               
               
               Cow position:chr22:37133822-37133407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:177-636
               
               
               Cow position:chr22:37141068-37140609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 136

               
               
               Conread position:177-685
               
               
               Cow position:chr22:37292496-37293020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:177-752
               
               
               Cow position:chr22:3803352-3802780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 132

               
               
               Conread position:177-757
               
               
               Cow position:chr22:6332878-6332297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:177-760
               
               
               Cow position:chr22:522227-522818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:177-767
               
               
               Cow position:chr22:1879973-1879361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 317

               
               
               Conread position:177-767
               
               
               Cow position:chr22:36184928-36184325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:177-772
               
               
               Cow position:chr22:538272-537663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:177-772
               
               
               Cow position:chr22:694790-694188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 123

               
               
               Conread position:177-772
               
               
               Cow position:chr22:10908670-10909271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 130

               
               
               Conread position:177-772
               
               
               Cow position:chr22:18028454-18027844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:177-772
               
               
               Cow position:chr22:44492221-44491597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 47

               
               
               Conread position:177-775
               
               
               Cow position:chr22:559539-560141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 134

               
               
               Conread position:177-775
               
               
               Cow position:chr22:31333879-31334475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 59

               
               
               Conread position:177-775
               
               
               Cow position:chr22:44935138-44934544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-779
               
               
               Cow position:chr22:19142524-19143131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 185

               
               
               Conread position:177-779
               
               
               Cow position:chr22:39468350-39468961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:177-793
               
               
               Cow position:chr22:3277191-3277813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr22:6501968-6502590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:178-759
               
               
               Cow position:chr22:37268333-37267738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:178-764
               
               
               Cow position:chr22:36860372-36860960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:178-793
               
               
               Cow position:chr22:34169506-34168880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 121

               
               
               Conread position:179-772
               
               
               Cow position:chr22:20239675-20240280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:179-793
               
               
               Cow position:chr22:11803887-11804515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:180-379
               
               
               Cow position:chr22:96188-96383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:180-739
               
               
               Cow position:chr22:46617204-46617740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:371
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):55, 137

               
               
               Conread position:181-550
               
               
               Cow position:chr22:16202093-16201716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):53, 130

               
               
               Conread position:181-590
               
               
               Cow position:chr22:37412304-37411902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:181-793
               
               
               Cow position:chr22:21590499-21589879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:182-745
               
               
               Cow position:chr22:35906227-35906812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:379
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:182-767
               
               
               Cow position:chr22:1323370-1322788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:182-767
               
               
               Cow position:chr22:27308613-27309208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:185-684
               
               
               Cow position:chr22:290542-291044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:185-767
               
               
               Cow position:chr22:5232130-5232712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:185-767
               
               
               Cow position:chr22:44368455-44369058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:187-764
               
               
               Cow position:chr22:13673652-13674224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:365
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):29, 132

               
               
               Conread position:189-791
               
               
               Cow position:chr22:38176247-38175651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:201-378
               
               
               Cow position:chr22:24536901-24536722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:203-551
               
               
               Cow position:chr22:36276761-36276408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):114, 33

               
               
               Conread position:205-769
               
               
               Cow position:chr22:11032882-11032320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:207-696
               
               
               Cow position:chr22:35913030-35913509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:232-377
               
               
               Cow position:chr22:8120976-8121122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 67

               
               
               Conread position:232-582
               
               
               Cow position:chr22:37992938-37993290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:232-595
               
               
               Cow position:chr22:1281622-1281981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 169

               
               
               Conread position:232-656
               
               
               Cow position:chr22:17327352-17327775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 59

               
               
               Conread position:232-662
               
               
               Cow position:chr22:41418219-41418625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):332, 61

               
               
               Conread position:232-685
               
               
               Cow position:chr22:44350557-44351012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 54

               
               
               Conread position:232-769
               
               
               Cow position:chr22:18815261-18815812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 432

               
               
               Conread position:232-793
               
               
               Cow position:chr22:42992278-42991721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 71

               
               
               Conread position:237-779
               
               
               Cow position:chr22:41240465-41239930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 32

               
               
               Conread position:238-453
               
               
               Cow position:chr22:23770851-23770643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:238-688
               
               
               Cow position:chr22:36590184-36590639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 76

               
               
               Conread position:238-772
               
               
               Cow position:chr22:6021762-6021225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 62

               
               
               Conread position:238-772
               
               
               Cow position:chr22:24951207-24950660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 247

               
               
               Conread position:238-793
               
               
               Cow position:chr22:31314444-31313888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 53

               
               
               Conread position:238-793
               
               
               Cow position:chr22:37071983-37072536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 369

               
               
               Conread position:239-793
               
               
               Cow position:chr22:44397552-44396992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 329

               
               
               Conread position:243-498
               
               
               Cow position:chr22:5937063-5937312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:251-688
               
               
               Cow position:chr22:36579498-36579942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:262-642
               
               
               Cow position:chr22:8737256-8737619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 41

               
               
               Conread position:305-793
               
               
               Cow position:chr22:18324815-18325271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):264, 27

               
               
               Conread position:314-788
               
               
               Cow position:chr22:44458079-44457604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 100

               
               
               Conread position:315-751
               
               
               Cow position:chr22:45930695-45930263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):100, 74

               
               
               Conread position:329-748
               
               
               Cow position:chr22:6142377-6142790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 92

               
               
               Conread position:329-762
               
               
               Cow position:chr22:39919901-39919478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):240, 105

               
               
               Conread position:333-789
               
               
               Cow position:chr22:8135114-8135561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 11

               
               
               Conread position:348-772
               
               
               Cow position:chr22:35671363-35671792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:408-766
               
               
               Cow position:chr22:41843240-41843591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):103, 154

               
               
               Conread position:439-793
               
               
               Cow position:chr22:36129815-36129456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 270

               
               
               Conread position:486-779
               
               
               Cow position:chr22:5940456-5940735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:530-737
               
               
               Cow position:chr22:35940160-35940370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 143

               
               
               Conread position:145-793
               
               
               Cow position:chr23:28914589-28913938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 204

               
               
               Conread position:169-527
               
               
               Cow position:chr23:8287207-8286842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 144

               
               
               Conread position:170-630
               
               
               Cow position:chr23:7369697-7369253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:172-532
               
               
               Cow position:chr23:29402548-29402913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 140

               
               
               Conread position:174-483
               
               
               Cow position:chr23:13512277-13511966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:174-508
               
               
               Cow position:chr23:18127118-18127447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 101

               
               
               Conread position:176-494
               
               
               Cow position:chr23:5739189-5739510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 132

               
               
               Conread position:177-492
               
               
               Cow position:chr23:25534483-25534165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:177-526
               
               
               Cow position:chr23:1957052-1956715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 47

               
               
               Conread position:177-552
               
               
               Cow position:chr23:14963882-14964258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:177-561
               
               
               Cow position:chr23:38581881-38581515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:177-593
               
               
               Cow position:chr23:15041598-15042000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):364, 49

               
               
               Conread position:177-602
               
               
               Cow position:chr23:965325-965762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:177-653
               
               
               Cow position:chr23:25682788-25683253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 59

               
               
               Conread position:177-673
               
               
               Cow position:chr23:15876402-15876909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:344
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):58, 94

               
               
               Conread position:177-686
               
               
               Cow position:chr23:1012634-1013138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:177-756
               
               
               Cow position:chr23:22146144-22146716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 127

               
               
               Conread position:177-761
               
               
               Cow position:chr23:19949424-19950020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 440

               
               
               Conread position:177-762
               
               
               Cow position:chr23:15526734-15526140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:177-775
               
               
               Cow position:chr23:3879918-3880519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:177-779
               
               
               Cow position:chr23:19490710-19490100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 300

               
               
               Conread position:177-779
               
               
               Cow position:chr23:36030210-36030817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:177-793
               
               
               Cow position:chr23:2025916-2026538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-793
               
               
               Cow position:chr23:3707292-3706664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:177-793
               
               
               Cow position:chr23:4639460-4640080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:177-793
               
               
               Cow position:chr23:20155046-20155666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:178-720
               
               
               Cow position:chr23:29451186-29451725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 122

               
               
               Conread position:178-788
               
               
               Cow position:chr23:28025824-28025218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:178-793
               
               
               Cow position:chr23:27971696-27971083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 240

               
               
               Conread position:179-592
               
               
               Cow position:chr23:6220418-6219997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):55, 238

               
               
               Conread position:179-641
               
               
               Cow position:chr23:23171666-23171195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:181-779
               
               
               Cow position:chr23:16614274-16614878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:181-793
               
               
               Cow position:chr23:4818185-4817565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:181-793
               
               
               Cow position:chr23:27400685-27400049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:182-779
               
               
               Cow position:chr23:2717548-2716949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:185-760
               
               
               Cow position:chr23:11779944-11779362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 119

               
               
               Conread position:187-767
               
               
               Cow position:chr23:2312083-2312671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 122

               
               
               Conread position:193-534
               
               
               Cow position:chr23:948654-948986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:193-793
               
               
               Cow position:chr23:618324-618902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:205-411
               
               
               Cow position:chr23:31648913-31649112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:219-614
               
               
               Cow position:chr23:2780854-2781246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):253, 56

               
               
               Conread position:232-491
               
               
               Cow position:chr23:26159611-26159878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:232-660
               
               
               Cow position:chr23:2758993-2758568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 68

               
               
               Conread position:232-767
               
               
               Cow position:chr23:4511169-4510639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 133

               
               
               Conread position:232-768
               
               
               Cow position:chr23:15218797-15219334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 71

               
               
               Conread position:232-771
               
               
               Cow position:chr23:11077113-11077646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 28

               
               
               Conread position:232-771
               
               
               Cow position:chr23:13510740-13510226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:353
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):314, 68

               
               
               Conread position:232-793
               
               
               Cow position:chr23:4889789-4889227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 70

               
               
               Conread position:237-602
               
               
               Cow position:chr23:5873479-5873831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 66

               
               
               Conread position:238-789
               
               
               Cow position:chr23:2342177-2341643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:265-463
               
               
               Cow position:chr23:2440785-2440979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 38

               
               
               Conread position:270-503
               
               
               Cow position:chr23:4754169-4753931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:272-486
               
               
               Cow position:chr23:7045378-7045588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:277-793
               
               
               Cow position:chr23:14262909-14262409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 32

               
               
               Conread position:317-767
               
               
               Cow position:chr23:28218307-28217859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 156

               
               
               Conread position:321-685
               
               
               Cow position:chr23:14778149-14778510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):198, 87

               
               
               Conread position:343-685
               
               
               Cow position:chr23:7337118-7336771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):168, 116

               
               
               Conread position:353-793
               
               
               Cow position:chr23:4360794-4360352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 111

               
               
               Conread position:374-793
               
               
               Cow position:chr23:14973599-14974014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):88, 173

               
               
               Conread position:425-793
               
               
               Cow position:chr23:14947830-14948196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 85

               
               
               Conread position:630-793
               
               
               Cow position:chr23:3861014-3861180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:174-658
               
               
               Cow position:chr24:6332440-6332933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:174-791
               
               
               Cow position:chr24:14349439-14348834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:389
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):59, 132

               
               
               Conread position:175-793
               
               
               Cow position:chr24:36558527-36559127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:176-760
               
               
               Cow position:chr24:38638788-38638204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:176-793
               
               
               Cow position:chr24:33934642-33934002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 406

               
               
               Conread position:177-413
               
               
               Cow position:chr24:6668565-6668794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:177-461
               
               
               Cow position:chr24:17370720-17370996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:177-474
               
               
               Cow position:chr24:17321966-17321654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:177-493
               
               
               Cow position:chr24:1450681-1450375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 226

               
               
               Conread position:177-501
               
               
               Cow position:chr24:6142339-6142019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):44, 133

               
               
               Conread position:177-694
               
               
               Cow position:chr24:6407287-6406756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 132

               
               
               Conread position:177-763
               
               
               Cow position:chr24:13233510-13232910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 310

               
               
               Conread position:177-768
               
               
               Cow position:chr24:6085315-6084720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-769
               
               
               Cow position:chr24:19702750-19702137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 223

               
               
               Conread position:177-770
               
               
               Cow position:chr24:5991973-5992574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:177-772
               
               
               Cow position:chr24:6435735-6435127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 133

               
               
               Conread position:177-775
               
               
               Cow position:chr24:4414281-4414886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:177-793
               
               
               Cow position:chr24:6023853-6024476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr24:7089715-7090337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:177-793
               
               
               Cow position:chr24:12087461-12086832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr24:12109451-12110074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:177-793
               
               
               Cow position:chr24:22972345-22971722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr24:29188545-29187918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:177-793
               
               
               Cow position:chr24:31006183-31006774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:392
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 141

               
               
               Conread position:178-408
               
               
               Cow position:chr24:35840811-35841052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:178-634
               
               
               Cow position:chr24:12150060-12150532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:178-696
               
               
               Cow position:chr24:12128811-12129341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 46

               
               
               Conread position:178-779
               
               
               Cow position:chr24:8151035-8151618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 57

               
               
               Conread position:178-793
               
               
               Cow position:chr24:12334505-12335131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 122

               
               
               Conread position:179-474
               
               
               Cow position:chr24:13044391-13044681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):200, 54

               
               
               Conread position:179-641
               
               
               Cow position:chr24:6327779-6328251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 121

               
               
               Conread position:179-793
               
               
               Cow position:chr24:12699567-12700190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 55

               
               
               Conread position:179-793
               
               
               Cow position:chr24:29305063-29305693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 121

               
               
               Conread position:179-793
               
               
               Cow position:chr24:44018758-44018162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 54

               
               
               Conread position:180-506
               
               
               Cow position:chr24:6130076-6129754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):53, 127

               
               
               Conread position:181-536
               
               
               Cow position:chr24:14881361-14881707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 45

               
               
               Conread position:181-793
               
               
               Cow position:chr24:6060147-6059527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 130

               
               
               Conread position:181-793
               
               
               Cow position:chr24:19834645-19834021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:185-726
               
               
               Cow position:chr24:40656289-40655746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:185-793
               
               
               Cow position:chr24:9187498-9188106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 49

               
               
               Conread position:193-793
               
               
               Cow position:chr24:23504631-23505237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:206-508
               
               
               Cow position:chr24:16097770-16097471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:232-697
               
               
               Cow position:chr24:37199821-37200283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 73

               
               
               Conread position:232-759
               
               
               Cow position:chr24:19324263-19324779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:340
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:232-763
               
               
               Cow position:chr24:12205116-12205652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 79

               
               
               Conread position:232-793
               
               
               Cow position:chr24:9545253-9544692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 57

               
               
               Conread position:232-793
               
               
               Cow position:chr24:17695792-17696343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 70

               
               
               Conread position:237-397
               
               
               Cow position:chr24:35869370-35869527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:238-594
               
               
               Cow position:chr24:40975522-40975873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):148, 64

               
               
               Conread position:238-779
               
               
               Cow position:chr24:147428-147968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 57

               
               
               Conread position:241-792
               
               
               Cow position:chr24:36709553-36708990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 321

               
               
               Conread position:242-767
               
               
               Cow position:chr24:14389358-14389879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:249-582
               
               
               Cow position:chr24:43060465-43060143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):295, 73

               
               
               Conread position:250-779
               
               
               Cow position:chr24:6049724-6049220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:290-513
               
               
               Cow position:chr24:27147843-27147623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:292-602
               
               
               Cow position:chr24:11866116-11866428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 30

               
               
               Conread position:292-791
               
               
               Cow position:chr24:12143206-12143705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 97

               
               
               Conread position:304-512
               
               
               Cow position:chr24:14754793-14754585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:304-753
               
               
               Cow position:chr24:13322279-13321839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:293
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):141, 86

               
               
               Conread position:315-793
               
               
               Cow position:chr24:12163021-12162551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 208

               
               
               Conread position:319-772
               
               
               Cow position:chr24:43814870-43814413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 158

               
               
               Conread position:323-785
               
               
               Cow position:chr24:6344072-6343611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):215, 5

               
               
               Conread position:326-629
               
               
               Cow position:chr24:29183250-29182944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:330-768
               
               
               Cow position:chr24:6476031-6475590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):180, 137

               
               
               Conread position:373-768
               
               
               Cow position:chr24:14383542-14383933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 26

               
               
               Conread position:391-760
               
               
               Cow position:chr24:28210045-28210421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):87, 353

               
               
               Conread position:519-771
               
               
               Cow position:chr24:6538860-6538609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):22, 87

               
               
               Conread position:535-793
               
               
               Cow position:chr24:37064111-37064362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:572-793
               
               
               Cow position:chr24:14754147-14754371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:170-764
               
               
               Cow position:chr25:17559339-17559933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 67

               
               
               Conread position:170-793
               
               
               Cow position:chr25:12941450-12942108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 143

               
               
               Conread position:177-437
               
               
               Cow position:chr25:30266708-30266450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 86

               
               
               Conread position:177-496
               
               
               Cow position:chr25:11830875-11831190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:177-540
               
               
               Cow position:chr25:27524929-27525293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:177-569
               
               
               Cow position:chr25:36636466-36636870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):12, 140

               
               
               Conread position:177-601
               
               
               Cow position:chr25:26928515-26928098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 82

               
               
               Conread position:177-641
               
               
               Cow position:chr25:18192547-18193021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 47

               
               
               Conread position:177-669
               
               
               Cow position:chr25:18450534-18450037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 113

               
               
               Conread position:177-767
               
               
               Cow position:chr25:17588342-17588942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:177-772
               
               
               Cow position:chr25:27021371-27021963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:177-793
               
               
               Cow position:chr25:22148751-22148128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:177-793
               
               
               Cow position:chr25:34345789-34346426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:178-367
               
               
               Cow position:chr25:34506475-34506670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 130

               
               
               Conread position:178-493
               
               
               Cow position:chr25:18177909-18177590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:178-627
               
               
               Cow position:chr25:24658999-24659442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 58

               
               
               Conread position:180-520
               
               
               Cow position:chr25:18305361-18305016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 119

               
               
               Conread position:181-501
               
               
               Cow position:chr25:19407988-19407679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:181-775
               
               
               Cow position:chr25:13782245-13781640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:181-793
               
               
               Cow position:chr25:25507913-25507292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:185-344
               
               
               Cow position:chr25:30519669-30519516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 49

               
               
               Conread position:185-711
               
               
               Cow position:chr25:39557236-39557758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:356
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:186-793
               
               
               Cow position:chr25:12757879-12758502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 162

               
               
               Conread position:197-792
               
               
               Cow position:chr25:24216272-24216841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:232-413
               
               
               Cow position:chr25:11931628-11931804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:232-542
               
               
               Cow position:chr25:33259567-33259269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):280, 27

               
               
               Conread position:232-561
               
               
               Cow position:chr25:18251745-18252052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):279, 71

               
               
               Conread position:257-793
               
               
               Cow position:chr25:26880308-26879780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 43

               
               
               Conread position:306-470
               
               
               Cow position:chr25:4759572-4759734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:437-775
               
               
               Cow position:chr25:26280193-26279850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 272

               
               
               Conread position:177-358
               
               
               Cow position:chr26:35336951-35337128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:177-388
               
               
               Cow position:chr26:5676339-5676123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:177-409
               
               
               Cow position:chr26:17325301-17325065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 130

               
               
               Conread position:177-497
               
               
               Cow position:chr26:8863053-8863364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 59

               
               
               Conread position:177-747
               
               
               Cow position:chr26:8613999-8614567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:177-767
               
               
               Cow position:chr26:21825453-21826048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 219

               
               
               Conread position:177-767
               
               
               Cow position:chr26:30783991-30783375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:177-769
               
               
               Cow position:chr26:19350288-19350882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 127

               
               
               Conread position:177-770
               
               
               Cow position:chr26:14895174-14894573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:177-779
               
               
               Cow position:chr26:6848210-6848820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:177-779
               
               
               Cow position:chr26:17395679-17396292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 123

               
               
               Conread position:178-769
               
               
               Cow position:chr26:30588136-30588736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:179-683
               
               
               Cow position:chr26:1087213-1087735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 121

               
               
               Conread position:179-772
               
               
               Cow position:chr26:2199863-2199253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 131

               
               
               Conread position:179-793
               
               
               Cow position:chr26:15143530-15144154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 121

               
               
               Conread position:179-793
               
               
               Cow position:chr26:18853451-18852826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:182-361
               
               
               Cow position:chr26:8086396-8086207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:182-562
               
               
               Cow position:chr26:11031375-11031006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 52

               
               
               Conread position:182-772
               
               
               Cow position:chr26:12587333-12587938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 306

               
               
               Conread position:201-437
               
               
               Cow position:chr26:6805888-6806118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:204-757
               
               
               Cow position:chr26:4603984-4604540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:232-684
               
               
               Cow position:chr26:1627152-1626714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:238-510
               
               
               Cow position:chr26:3864395-3864665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):143, 62

               
               
               Conread position:250-468
               
               
               Cow position:chr26:18033904-18033690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:262-767
               
               
               Cow position:chr26:8871014-8870508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 40

               
               
               Conread position:269-793
               
               
               Cow position:chr26:17995495-17995989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 17

               
               
               Conread position:372-793
               
               
               Cow position:chr26:4333269-4333692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 40

               
               
               Conread position:545-793
               
               
               Cow position:chr26:9562496-9562746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:170-767
               
               
               Cow position:chr27:16033229-16033825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:170-793
               
               
               Cow position:chr27:27415055-27414413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 140

               
               
               Conread position:176-379
               
               
               Cow position:chr27:21286721-21286931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:176-775
               
               
               Cow position:chr27:26326245-26325634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 123

               
               
               Conread position:177-413
               
               
               Cow position:chr27:27664170-27663926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-494
               
               
               Cow position:chr27:27751926-27752264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:177-680
               
               
               Cow position:chr27:15636177-15636690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 134

               
               
               Conread position:177-769
               
               
               Cow position:chr27:9330901-9330295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:177-792
               
               
               Cow position:chr27:3234366-3234992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 381

               
               
               Conread position:177-793
               
               
               Cow position:chr27:1210522-1209899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-793
               
               
               Cow position:chr27:14459277-14459907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:179-793
               
               
               Cow position:chr27:11095972-11095350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:181-468
               
               
               Cow position:chr27:1677417-1677698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:181-501
               
               
               Cow position:chr27:1848177-1848490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:185-516
               
               
               Cow position:chr27:22149988-22149650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:188-745
               
               
               Cow position:chr27:30273044-30273613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 121

               
               
               Conread position:232-779
               
               
               Cow position:chr27:27507259-27506696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:232-793
               
               
               Cow position:chr27:9992094-9992653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 71

               
               
               Conread position:233-402
               
               
               Cow position:chr27:25058022-25057857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:236-747
               
               
               Cow position:chr27:27905966-27905460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:313
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:243-647
               
               
               Cow position:chr27:17319407-17319799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):116, 29

               
               
               Conread position:292-793
               
               
               Cow position:chr27:26554625-26555117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:305-728
               
               
               Cow position:chr27:16089046-16089480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):205, 18

               
               
               Conread position:322-581
               
               
               Cow position:chr27:16551463-16551218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):215, 87

               
               
               Conread position:343-549
               
               
               Cow position:chr27:25803901-25804109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:354-625
               
               
               Cow position:chr27:20135066-20135348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:356-793
               
               
               Cow position:chr27:22673321-22672882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:295
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):166, 57

               
               
               Conread position:424-772
               
               
               Cow position:chr27:3643332-3643670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:429-775
               
               
               Cow position:chr27:27663879-27663533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:513-793
               
               
               Cow position:chr27:894041-893757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):33, 195

               
               
               Conread position:514-772
               
               
               Cow position:chr27:15123760-15123497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 168

               
               
               Conread position:170-420
               
               
               Cow position:chr28:6457114-6457357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:170-497
               
               
               Cow position:chr28:28440034-28439705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 143

               
               
               Conread position:176-430
               
               
               Cow position:chr28:10470721-10470464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):60, 121

               
               
               Conread position:176-793
               
               
               Cow position:chr28:8684519-8685125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 157

               
               
               Conread position:177-426
               
               
               Cow position:chr28:7028574-7028815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):209, 65

               
               
               Conread position:177-466
               
               
               Cow position:chr28:27678758-27678471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:177-501
               
               
               Cow position:chr28:14232717-14233053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:177-513
               
               
               Cow position:chr28:5799508-5799170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:177-557
               
               
               Cow position:chr28:10460394-10460776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 119

               
               
               Conread position:177-582
               
               
               Cow position:chr28:9179828-9179428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 57

               
               
               Conread position:177-611
               
               
               Cow position:chr28:6231557-6231999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 115

               
               
               Conread position:177-621
               
               
               Cow position:chr28:29760714-29761166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 132

               
               
               Conread position:177-627
               
               
               Cow position:chr28:24883770-24884221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 57

               
               
               Conread position:177-652
               
               
               Cow position:chr28:8380279-8379787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:177-671
               
               
               Cow position:chr28:10580874-10581376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-767
               
               
               Cow position:chr28:21360707-21360095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 317

               
               
               Conread position:177-768
               
               
               Cow position:chr28:26425039-26425632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:177-769
               
               
               Cow position:chr28:1506082-1505483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-769
               
               
               Cow position:chr28:10072488-10071892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 132

               
               
               Conread position:177-769
               
               
               Cow position:chr28:22259936-22260538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-775
               
               
               Cow position:chr28:3191040-3191644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-775
               
               
               Cow position:chr28:5938699-5938091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 134

               
               
               Conread position:177-775
               
               
               Cow position:chr28:7741657-7741082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:177-775
               
               
               Cow position:chr28:13461191-13460579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 571

               
               
               Conread position:177-776
               
               
               Cow position:chr28:17666091-17666696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-779
               
               
               Cow position:chr28:12151522-12150908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 142

               
               
               Conread position:177-793
               
               
               Cow position:chr28:1166664-1167288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:177-793
               
               
               Cow position:chr28:5750492-5751115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 123

               
               
               Conread position:177-793
               
               
               Cow position:chr28:18519236-18519856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:178-455
               
               
               Cow position:chr28:15034909-15035185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):144, 46

               
               
               Conread position:178-500
               
               
               Cow position:chr28:2987873-2988197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 139

               
               
               Conread position:178-769
               
               
               Cow position:chr28:29821210-29820618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 122

               
               
               Conread position:179-444
               
               
               Cow position:chr28:1954567-1954296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:179-774
               
               
               Cow position:chr28:484382-484982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):54, 122

               
               
               Conread position:179-793
               
               
               Cow position:chr28:6538051-6538674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:179-793
               
               
               Cow position:chr28:14751757-14751133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:181-438
               
               
               Cow position:chr28:22042076-22042327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:181-695
               
               
               Cow position:chr28:33246868-33247394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:356
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:181-752
               
               
               Cow position:chr28:7811649-7811094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:384
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:181-767
               
               
               Cow position:chr28:24590068-24589467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 307

               
               
               Conread position:181-768
               
               
               Cow position:chr28:1386186-1386784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:181-793
               
               
               Cow position:chr28:14704176-14704799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 131

               
               
               Conread position:185-779
               
               
               Cow position:chr28:5113090-5113693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:185-793
               
               
               Cow position:chr28:5567344-5566743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:186-720
               
               
               Cow position:chr28:10646219-10646738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 51

               
               
               Conread position:213-767
               
               
               Cow position:chr28:24668780-24668238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 26

               
               
               Conread position:232-522
               
               
               Cow position:chr28:13603682-13603968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):138, 68

               
               
               Conread position:232-746
               
               
               Cow position:chr28:5803190-5802667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 71

               
               
               Conread position:232-769
               
               
               Cow position:chr28:8719794-8720333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 82

               
               
               Conread position:232-793
               
               
               Cow position:chr28:1813711-1814275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 78

               
               
               Conread position:232-793
               
               
               Cow position:chr28:32791227-32791785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 48

               
               
               Conread position:235-793
               
               
               Cow position:chr28:22064246-22064779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:236-506
               
               
               Cow position:chr28:10873349-10873100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:237-793
               
               
               Cow position:chr28:3019556-3020123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:292-793
               
               
               Cow position:chr28:2723831-2724335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 33

               
               
               Conread position:319-767
               
               
               Cow position:chr28:6779272-6779724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 6

               
               
               Conread position:326-793
               
               
               Cow position:chr28:22232360-22232812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 292

               
               
               Conread position:391-793
               
               
               Cow position:chr28:25169087-25169482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):173, 68

               
               
               Conread position:463-772
               
               
               Cow position:chr28:18146833-18147142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 57

               
               
               Conread position:488-789
               
               
               Cow position:chr28:10873077-10872792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:523-793
               
               
               Cow position:chr28:33259501-33259229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 196

               
               
               Conread position:546-789
               
               
               Cow position:chr28:28473486-28473241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:168-775
               
               
               Cow position:chr29:2101039-2100423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:174-765
               
               
               Cow position:chr29:31182587-31181985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 126

               
               
               Conread position:177-493
               
               
               Cow position:chr29:2747260-2747573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:177-514
               
               
               Cow position:chr29:801220-801555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):140, 58

               
               
               Conread position:177-558
               
               
               Cow position:chr29:38237338-38237728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 140

               
               
               Conread position:177-640
               
               
               Cow position:chr29:37165312-37164847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:177-659
               
               
               Cow position:chr29:32287360-32286890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:177-659
               
               
               Cow position:chr29:32541275-32540783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:177-685
               
               
               Cow position:chr29:23977303-23976784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 122

               
               
               Conread position:177-717
               
               
               Cow position:chr29:14210389-14210938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:177-739
               
               
               Cow position:chr29:13583259-13582685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-769
               
               
               Cow position:chr29:10647069-10647672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:177-769
               
               
               Cow position:chr29:16111566-16110956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 316

               
               
               Conread position:177-772
               
               
               Cow position:chr29:609463-610042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 40

               
               
               Conread position:177-772
               
               
               Cow position:chr29:14084949-14085553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 132

               
               
               Conread position:177-775
               
               
               Cow position:chr29:39078527-39079134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:177-779
               
               
               Cow position:chr29:38228158-38227550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr29:47258-47913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr29:251927-251331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 142

               
               
               Conread position:177-793
               
               
               Cow position:chr29:14587098-14586476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 130

               
               
               Conread position:177-793
               
               
               Cow position:chr29:20252347-20251718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:177-793
               
               
               Cow position:chr29:34798629-34799251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr29:43323738-43323113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 133

               
               
               Conread position:178-764
               
               
               Cow position:chr29:26163657-26164244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 131

               
               
               Conread position:178-767
               
               
               Cow position:chr29:19886257-19885646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:178-769
               
               
               Cow position:chr29:10822803-10823392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:178-769
               
               
               Cow position:chr29:21238217-21238792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 40

               
               
               Conread position:178-793
               
               
               Cow position:chr29:40501804-40502424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:179-411
               
               
               Cow position:chr29:13622679-13622905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:179-695
               
               
               Cow position:chr29:7845565-7845033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:179-720
               
               
               Cow position:chr29:35297995-35297481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 55

               
               
               Conread position:179-769
               
               
               Cow position:chr29:32891968-32891385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 136

               
               
               Conread position:179-779
               
               
               Cow position:chr29:27979747-27980358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:179-793
               
               
               Cow position:chr29:32558579-32559202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:181-463
               
               
               Cow position:chr29:3176245-3176519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 131

               
               
               Conread position:181-771
               
               
               Cow position:chr29:9620589-9619998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 133

               
               
               Conread position:181-772
               
               
               Cow position:chr29:11227483-11228075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 35

               
               
               Conread position:181-779
               
               
               Cow position:chr29:5958766-5958168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:181-779
               
               
               Cow position:chr29:7430042-7430650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 131

               
               
               Conread position:182-652
               
               
               Cow position:chr29:6213697-6213220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:315
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:185-584
               
               
               Cow position:chr29:21265102-21264709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:185-769
               
               
               Cow position:chr29:6265095-6265697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 117

               
               
               Conread position:185-792
               
               
               Cow position:chr29:18855778-18856390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:185-793
               
               
               Cow position:chr29:668898-669505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 49

               
               
               Conread position:190-465
               
               
               Cow position:chr29:15946667-15946933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:194-634
               
               
               Cow position:chr29:43408466-43408903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:197-793
               
               
               Cow position:chr29:31023646-31024220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:386
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:203-751
               
               
               Cow position:chr29:35263817-35263293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:232-473
               
               
               Cow position:chr29:8061010-8061247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):138, 67

               
               
               Conread position:232-483
               
               
               Cow position:chr29:27262781-27263026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:232-772
               
               
               Cow position:chr29:2949247-2949762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 23

               
               
               Conread position:232-775
               
               
               Cow position:chr29:25931415-25931966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 384

               
               
               Conread position:232-778
               
               
               Cow position:chr29:21425909-21426452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 159

               
               
               Conread position:238-769
               
               
               Cow position:chr29:9642647-9643181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:262-572
               
               
               Cow position:chr29:43791509-43791201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):208, 38

               
               
               Conread position:262-793
               
               
               Cow position:chr29:5981629-5982158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 41

               
               
               Conread position:262-793
               
               
               Cow position:chr29:15967776-15968308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 38

               
               
               Conread position:269-760
               
               
               Cow position:chr29:2840295-2840791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:292-607
               
               
               Cow position:chr29:30259530-30259842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:304-695
               
               
               Cow position:chr29:41366640-41367034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:322-793
               
               
               Cow position:chr29:32804467-32803995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 158

               
               
               Conread position:348-793
               
               
               Cow position:chr29:34926481-34926031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 129

               
               
               Conread position:360-793
               
               
               Cow position:chr29:15893858-15894297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:518-787
               
               
               Cow position:chr29:3176767-3177034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):113, 97

               
               
               Conread position:544-767
               
               
               Cow position:chr29:15785154-15785381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 196

               
               
               Conread position:172-558
               
               
               Cow position:chr3:63200707-63200320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:174-479
               
               
               Cow position:chr3:24458079-24458377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:174-501
               
               
               Cow position:chr3:46816596-46816921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:174-595
               
               
               Cow position:chr3:24444979-24445410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 138

               
               
               Conread position:174-688
               
               
               Cow position:chr3:63270477-63269970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 143

               
               
               Conread position:174-793
               
               
               Cow position:chr3:57483633-57484254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 138

               
               
               Conread position:176-422
               
               
               Cow position:chr3:67164382-67164129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:176-512
               
               
               Cow position:chr3:24644326-24643989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:176-771
               
               
               Cow position:chr3:19720585-19721177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-396
               
               
               Cow position:chr3:45865005-45865228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 137

               
               
               Conread position:177-396
               
               
               Cow position:chr3:74058622-74058408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:177-493
               
               
               Cow position:chr3:16075586-16075269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 106

               
               
               Conread position:177-501
               
               
               Cow position:chr3:11198455-11198789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:177-506
               
               
               Cow position:chr3:24347053-24346729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:177-532
               
               
               Cow position:chr3:30617829-30618192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:177-532
               
               
               Cow position:chr3:64027044-64027392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):293, 59

               
               
               Conread position:177-593
               
               
               Cow position:chr3:77424716-77424309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:177-643
               
               
               Cow position:chr3:49271017-49271484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 130

               
               
               Conread position:177-676
               
               
               Cow position:chr3:6877078-6877578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 121

               
               
               Conread position:177-681
               
               
               Cow position:chr3:2869878-2869360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 309

               
               
               Conread position:177-721
               
               
               Cow position:chr3:6783459-6782913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 133

               
               
               Conread position:177-728
               
               
               Cow position:chr3:45975590-45975036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 57

               
               
               Conread position:177-744
               
               
               Cow position:chr3:42052064-42052628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:177-761
               
               
               Cow position:chr3:32621948-32622542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 47

               
               
               Conread position:177-762
               
               
               Cow position:chr3:70888231-70887639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:177-767
               
               
               Cow position:chr3:56339325-56339925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:177-767
               
               
               Cow position:chr3:68872655-68873258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-769
               
               
               Cow position:chr3:2709776-2710370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:177-769
               
               
               Cow position:chr3:18812592-18812002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-772
               
               
               Cow position:chr3:2906680-2907277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 59

               
               
               Conread position:177-772
               
               
               Cow position:chr3:3524115-3523511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 57

               
               
               Conread position:177-772
               
               
               Cow position:chr3:18860508-18859906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-772
               
               
               Cow position:chr3:19800081-19800686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-772
               
               
               Cow position:chr3:19879737-19879149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 57

               
               
               Conread position:177-772
               
               
               Cow position:chr3:37970137-37969537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-772
               
               
               Cow position:chr3:46680523-46679922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:177-772
               
               
               Cow position:chr3:46860199-46860811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:177-775
               
               
               Cow position:chr3:64016279-64016874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 59

               
               
               Conread position:177-779
               
               
               Cow position:chr3:6686902-6686294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 142

               
               
               Conread position:177-779
               
               
               Cow position:chr3:34029834-34030410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 50

               
               
               Conread position:177-779
               
               
               Cow position:chr3:40824484-40823875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 135

               
               
               Conread position:177-779
               
               
               Cow position:chr3:46503649-46503022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 242

               
               
               Conread position:177-779
               
               
               Cow position:chr3:49544114-49544723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 145

               
               
               Conread position:177-789
               
               
               Cow position:chr3:13493471-13492869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:393
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:177-789
               
               
               Cow position:chr3:24353993-24353397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:177-793
               
               
               Cow position:chr3:10240754-10240132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr3:19755841-19756480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 550

               
               
               Conread position:177-793
               
               
               Cow position:chr3:27919518-27918905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 132

               
               
               Conread position:177-793
               
               
               Cow position:chr3:42448202-42447575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr3:48229381-48229994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 124

               
               
               Conread position:177-793
               
               
               Cow position:chr3:49136478-49137070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):369, 47

               
               
               Conread position:177-793
               
               
               Cow position:chr3:50916434-50915802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 126

               
               
               Conread position:177-793
               
               
               Cow position:chr3:53516695-53516083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:177-793
               
               
               Cow position:chr3:54771946-54771365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 59

               
               
               Conread position:177-793
               
               
               Cow position:chr3:59862472-59861843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 133

               
               
               Conread position:177-793
               
               
               Cow position:chr3:64356707-64357315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 107

               
               
               Conread position:177-793
               
               
               Cow position:chr3:66621274-66620652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 113

               
               
               Conread position:177-793
               
               
               Cow position:chr3:72631156-72630545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 58

               
               
               Conread position:177-793
               
               
               Cow position:chr3:75040066-75040692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr3:79431613-79432243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:178-388
               
               
               Cow position:chr3:55892507-55892289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 136

               
               
               Conread position:178-473
               
               
               Cow position:chr3:79315021-79314721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):62, 143

               
               
               Conread position:178-715
               
               
               Cow position:chr3:12678747-12679296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:178-767
               
               
               Cow position:chr3:66889877-66890466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:178-789
               
               
               Cow position:chr3:56398272-56397668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:178-793
               
               
               Cow position:chr3:42994581-42995205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:179-465
               
               
               Cow position:chr3:34506254-34506546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:179-474
               
               
               Cow position:chr3:2368248-2368539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):264, 55

               
               
               Conread position:179-641
               
               
               Cow position:chr3:4287178-4286706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:179-735
               
               
               Cow position:chr3:48843343-48842781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:179-772
               
               
               Cow position:chr3:29330200-29330779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 55

               
               
               Conread position:179-793
               
               
               Cow position:chr3:7157631-7158245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:179-793
               
               
               Cow position:chr3:7170292-7169683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 125

               
               
               Conread position:179-793
               
               
               Cow position:chr3:64651726-64651097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:181-748
               
               
               Cow position:chr3:19939980-19939404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 42

               
               
               Conread position:181-779
               
               
               Cow position:chr3:5884622-5884026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 43

               
               
               Conread position:182-602
               
               
               Cow position:chr3:57753886-57753457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 127

               
               
               Conread position:182-641
               
               
               Cow position:chr3:69100396-69100852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:312
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:182-700
               
               
               Cow position:chr3:36863372-36863897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:185-499
               
               
               Cow position:chr3:15181441-15181133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:185-592
               
               
               Cow position:chr3:83293837-83294239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 112

               
               
               Conread position:185-696
               
               
               Cow position:chr3:40343209-40342708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 90

               
               
               Conread position:185-793
               
               
               Cow position:chr3:2918550-2917931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:185-793
               
               
               Cow position:chr3:19889527-19890127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:185-793
               
               
               Cow position:chr3:30315644-30315030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:187-720
               
               
               Cow position:chr3:3840719-3841264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 370

               
               
               Conread position:187-767
               
               
               Cow position:chr3:45033824-45033238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 47

               
               
               Conread position:187-780
               
               
               Cow position:chr3:63002458-63003063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:187-793
               
               
               Cow position:chr3:47177194-47177805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:197-441
               
               
               Cow position:chr3:46017112-46016871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:199-662
               
               
               Cow position:chr3:648451-648900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:313
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:201-468
               
               
               Cow position:chr3:4736805-4737070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:205-793
               
               
               Cow position:chr3:50126550-50127162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 525

               
               
               Conread position:231-790
               
               
               Cow position:chr3:10095460-10094914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:352
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:232-387
               
               
               Cow position:chr3:77444496-77444346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:232-476
               
               
               Cow position:chr3:37626026-37625788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:232-595
               
               
               Cow position:chr3:18541110-18541472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 70

               
               
               Conread position:232-647
               
               
               Cow position:chr3:48058326-48058739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 71

               
               
               Conread position:232-677
               
               
               Cow position:chr3:37989926-37989481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:305
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):163, 72

               
               
               Conread position:232-764
               
               
               Cow position:chr3:21181669-21182191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 71

               
               
               Conread position:232-777
               
               
               Cow position:chr3:4667132-4666596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:344
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):298, 70

               
               
               Conread position:232-793
               
               
               Cow position:chr3:78026389-78026949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 71

               
               
               Conread position:236-766
               
               
               Cow position:chr3:68346110-68346629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:334
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):354, 39

               
               
               Conread position:236-767
               
               
               Cow position:chr3:23289306-23289839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 75

               
               
               Conread position:237-500
               
               
               Cow position:chr3:4029198-4028939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:237-515
               
               
               Cow position:chr3:13476241-13475971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:238-767
               
               
               Cow position:chr3:20381568-20381040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 64

               
               
               Conread position:238-793
               
               
               Cow position:chr3:68698945-68699495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 64

               
               
               Conread position:240-772
               
               
               Cow position:chr3:58948649-58948107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 434

               
               
               Conread position:262-563
               
               
               Cow position:chr3:42143859-42144159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):249, 63

               
               
               Conread position:262-769
               
               
               Cow position:chr3:65582287-65582775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 31

               
               
               Conread position:268-659
               
               
               Cow position:chr3:18355276-18355663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 44

               
               
               Conread position:276-563
               
               
               Cow position:chr3:81005465-81005180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:276-594
               
               
               Cow position:chr3:81592704-81593023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:304-793
               
               
               Cow position:chr3:24315431-24314937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 21

               
               
               Conread position:305-771
               
               
               Cow position:chr3:45773446-45773906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 17

               
               
               Conread position:306-728
               
               
               Cow position:chr3:45894591-45895017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:314-521
               
               
               Cow position:chr3:24588814-24589022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:316-772
               
               
               Cow position:chr3:41210783-41211243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 161

               
               
               Conread position:333-787
               
               
               Cow position:chr3:83232314-83232761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 33

               
               
               Conread position:334-793
               
               
               Cow position:chr3:42433148-42432689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 74

               
               
               Conread position:335-772
               
               
               Cow position:chr3:18462638-18463075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 260

               
               
               Conread position:348-767
               
               
               Cow position:chr3:36118581-36118158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 129

               
               
               Conread position:348-767
               
               
               Cow position:chr3:40339194-40339615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 129

               
               
               Conread position:350-775
               
               
               Cow position:chr3:7480312-7480742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 389

               
               
               Conread position:360-780
               
               
               Cow position:chr3:6661703-6661290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 74

               
               
               Conread position:451-751
               
               
               Cow position:chr3:56146102-56145797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):68, 258

               
               
               Conread position:489-772
               
               
               Cow position:chr3:4028673-4028379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 247

               
               
               Conread position:510-793
               
               
               Cow position:chr3:24589252-24589535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:522-793
               
               
               Cow position:chr3:24643929-24643662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 199

               
               
               Conread position:523-776
               
               
               Cow position:chr3:32616251-32616508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:170-588
               
               
               Cow position:chr4:16057587-16057161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 141

               
               
               Conread position:171-530
               
               
               Cow position:chr4:49716577-49716218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:172-624
               
               
               Cow position:chr4:44780320-44780779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:174-536
               
               
               Cow position:chr4:33494492-33494127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:174-770
               
               
               Cow position:chr4:1367266-1367864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:176-460
               
               
               Cow position:chr4:54239873-54239597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 144

               
               
               Conread position:176-684
               
               
               Cow position:chr4:16360816-16360296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:176-767
               
               
               Cow position:chr4:60263259-60263858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 138

               
               
               Conread position:177-397
               
               
               Cow position:chr4:34178336-34178563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 136

               
               
               Conread position:177-440
               
               
               Cow position:chr4:967177-967447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):25, 137

               
               
               Conread position:177-448
               
               
               Cow position:chr4:69521437-69521188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:177-500
               
               
               Cow position:chr4:10062323-10062001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:177-516
               
               
               Cow position:chr4:19252344-19252009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 129

               
               
               Conread position:177-593
               
               
               Cow position:chr4:14776351-14775919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:177-620
               
               
               Cow position:chr4:5443932-5444386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-636
               
               
               Cow position:chr4:16639512-16639045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 124

               
               
               Conread position:177-647
               
               
               Cow position:chr4:50975529-50975040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:177-660
               
               
               Cow position:chr4:1049360-1049851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 146

               
               
               Conread position:177-662
               
               
               Cow position:chr4:6206501-6206004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 66

               
               
               Conread position:177-693
               
               
               Cow position:chr4:17925066-17925583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:177-739
               
               
               Cow position:chr4:28832462-28831890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 22

               
               
               Conread position:177-764
               
               
               Cow position:chr4:43882004-43881410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:177-767
               
               
               Cow position:chr4:1929741-1930323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-767
               
               
               Cow position:chr4:4416959-4416376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 59

               
               
               Conread position:177-767
               
               
               Cow position:chr4:18423623-18424223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-768
               
               
               Cow position:chr4:33596422-33595852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):344, 14

               
               
               Conread position:177-769
               
               
               Cow position:chr4:356808-356208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 120

               
               
               Conread position:177-769
               
               
               Cow position:chr4:10882451-10881849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:177-769
               
               
               Cow position:chr4:25598597-25599196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-772
               
               
               Cow position:chr4:160062-159450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:177-772
               
               
               Cow position:chr4:530304-529696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 309

               
               
               Conread position:177-772
               
               
               Cow position:chr4:3126704-3126092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-772
               
               
               Cow position:chr4:32213064-32212464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 57

               
               
               Conread position:177-789
               
               
               Cow position:chr4:13870904-13870297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:177-789
               
               
               Cow position:chr4:46665426-46664802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 192

               
               
               Conread position:177-793
               
               
               Cow position:chr4:12588231-12587613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-793
               
               
               Cow position:chr4:13494230-13493594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:177-793
               
               
               Cow position:chr4:27300584-27301190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 143

               
               
               Conread position:177-793
               
               
               Cow position:chr4:27334612-27333984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:177-793
               
               
               Cow position:chr4:33071921-33072545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-793
               
               
               Cow position:chr4:43318740-43319364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr4:57984887-57984263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 316

               
               
               Conread position:178-410
               
               
               Cow position:chr4:28149318-28149098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:178-764
               
               
               Cow position:chr4:20604628-20604035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:386
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:179-502
               
               
               Cow position:chr4:30472130-30471803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:179-510
               
               
               Cow position:chr4:45106358-45106021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:179-750
               
               
               Cow position:chr4:18337752-18337182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:179-767
               
               
               Cow position:chr4:5881054-5880467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:181-501
               
               
               Cow position:chr4:41955656-41955325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:184-793
               
               
               Cow position:chr4:36897269-36896650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:185-662
               
               
               Cow position:chr4:11110387-11110866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:185-767
               
               
               Cow position:chr4:17092973-17093563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:187-779
               
               
               Cow position:chr4:6489474-6490073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 114

               
               
               Conread position:187-793
               
               
               Cow position:chr4:11836778-11837370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:191-523
               
               
               Cow position:chr4:51042408-51042741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 115

               
               
               Conread position:192-583
               
               
               Cow position:chr4:45298208-45298596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 7

               
               
               Conread position:197-478
               
               
               Cow position:chr4:4178139-4177866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:205-707
               
               
               Cow position:chr4:39270539-39271025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 32

               
               
               Conread position:232-641
               
               
               Cow position:chr4:22474186-22473781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):227, 68

               
               
               Conread position:232-684
               
               
               Cow position:chr4:47254093-47254542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:232-775
               
               
               Cow position:chr4:12240381-12240915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 71

               
               
               Conread position:238-495
               
               
               Cow position:chr4:27294487-27294740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:238-779
               
               
               Cow position:chr4:31670118-31669565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 251

               
               
               Conread position:266-766
               
               
               Cow position:chr4:37621-38120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:312
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:269-766
               
               
               Cow position:chr4:29583409-29583885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:317
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):198, 54

               
               
               Conread position:280-620
               
               
               Cow position:chr4:47521853-47521530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 31

               
               
               Conread position:306-738
               
               
               Cow position:chr4:46573836-46573397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:308-495
               
               
               Cow position:chr4:43398068-43398247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:314-719
               
               
               Cow position:chr4:34183781-34184191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:316-767
               
               
               Cow position:chr4:18191152-18190707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 387

               
               
               Conread position:318-500
               
               
               Cow position:chr4:100049-100231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):152, 159

               
               
               Conread position:373-789
               
               
               Cow position:chr4:18476759-18477169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 78

               
               
               Conread position:401-793
               
               
               Cow position:chr4:7331256-7330874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):163, 56

               
               
               Conread position:428-779
               
               
               Cow position:chr4:17587034-17587378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):116, 36

               
               
               Conread position:435-613
               
               
               Cow position:chr4:38906611-38906431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:462-789
               
               
               Cow position:chr4:54239619-54239290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:561-793
               
               
               Cow position:chr4:9103785-9103554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 6

               
               
               Conread position:1-170
               
               
               Cow position:chr5:27173005-27173173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:164-595
               
               
               Cow position:chr5:1227690-1227253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:164-793
               
               
               Cow position:chr5:4070219-4069591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 149

               
               
               Conread position:166-562
               
               
               Cow position:chr5:59283326-59282924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 135

               
               
               Conread position:169-793
               
               
               Cow position:chr5:67594882-67594256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:391
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:170-397
               
               
               Cow position:chr5:27654816-27654587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 85

               
               
               Conread position:170-535
               
               
               Cow position:chr5:13046460-13046084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 147

               
               
               Conread position:174-772
               
               
               Cow position:chr5:45701315-45700706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 280

               
               
               Conread position:176-752
               
               
               Cow position:chr5:20429057-20428471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:361
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 131

               
               
               Conread position:177-394
               
               
               Cow position:chr5:7274842-7274625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:177-398
               
               
               Cow position:chr5:12731712-12731940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-411
               
               
               Cow position:chr5:39017034-39016794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:177-413
               
               
               Cow position:chr5:24998992-24999230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:177-468
               
               
               Cow position:chr5:18885536-18885825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:177-473
               
               
               Cow position:chr5:10855819-10856120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):53, 120

               
               
               Conread position:177-538
               
               
               Cow position:chr5:40789067-40788690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 127

               
               
               Conread position:177-562
               
               
               Cow position:chr5:23669131-23669515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:177-563
               
               
               Cow position:chr5:46665015-46664622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:177-743
               
               
               Cow position:chr5:31707560-31706970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 318

               
               
               Conread position:177-746
               
               
               Cow position:chr5:3503111-3503698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 306

               
               
               Conread position:177-761
               
               
               Cow position:chr5:3786924-3786323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:177-767
               
               
               Cow position:chr5:3965444-3964846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:177-768
               
               
               Cow position:chr5:18121485-18122081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:177-769
               
               
               Cow position:chr5:57481541-57482144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-771
               
               
               Cow position:chr5:4386238-4385636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-771
               
               
               Cow position:chr5:53624925-53625497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 135

               
               
               Conread position:177-772
               
               
               Cow position:chr5:4018197-4018808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-772
               
               
               Cow position:chr5:10775271-10775873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:177-772
               
               
               Cow position:chr5:41960739-41961333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 163

               
               
               Conread position:177-772
               
               
               Cow position:chr5:47830080-47830677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 131

               
               
               Conread position:177-779
               
               
               Cow position:chr5:27908271-27908891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:177-779
               
               
               Cow position:chr5:48807741-48808353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:177-779
               
               
               Cow position:chr5:58197013-58196412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 134

               
               
               Conread position:177-779
               
               
               Cow position:chr5:73488562-73489173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:177-788
               
               
               Cow position:chr5:10919818-10919202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 131

               
               
               Conread position:177-793
               
               
               Cow position:chr5:24099663-24099043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 129

               
               
               Conread position:177-793
               
               
               Cow position:chr5:37733344-37732722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr5:46629181-46629812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 136

               
               
               Conread position:177-793
               
               
               Cow position:chr5:47893547-47894167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 137

               
               
               Conread position:177-793
               
               
               Cow position:chr5:64781018-64781641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:178-556
               
               
               Cow position:chr5:46668940-46668569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 130

               
               
               Conread position:178-670
               
               
               Cow position:chr5:32773762-32773268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:178-751
               
               
               Cow position:chr5:41929250-41929800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:363
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):246, 28

               
               
               Conread position:178-772
               
               
               Cow position:chr5:35526806-35526204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 112

               
               
               Conread position:178-772
               
               
               Cow position:chr5:41527799-41528367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:178-792
               
               
               Cow position:chr5:34697598-34696975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 131

               
               
               Conread position:179-525
               
               
               Cow position:chr5:307331-307685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:179-767
               
               
               Cow position:chr5:4757181-4757767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 55

               
               
               Conread position:179-793
               
               
               Cow position:chr5:35301094-35300469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:179-793
               
               
               Cow position:chr5:45181149-45181774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 121

               
               
               Conread position:180-772
               
               
               Cow position:chr5:51769964-51770550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 58

               
               
               Conread position:181-500
               
               
               Cow position:chr5:49072661-49072973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):244, 44

               
               
               Conread position:181-532
               
               
               Cow position:chr5:9419079-9419434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 55

               
               
               Conread position:181-740
               
               
               Cow position:chr5:32363944-32363404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 56

               
               
               Conread position:181-740
               
               
               Cow position:chr5:49519554-49518987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 118

               
               
               Conread position:181-779
               
               
               Cow position:chr5:54791639-54792252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 201

               
               
               Conread position:183-793
               
               
               Cow position:chr5:27002994-27002402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 132

               
               
               Conread position:184-484
               
               
               Cow position:chr5:31100445-31100739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:185-793
               
               
               Cow position:chr5:18664773-18664162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 49

               
               
               Conread position:186-778
               
               
               Cow position:chr5:46004867-46005467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 116

               
               
               Conread position:187-758
               
               
               Cow position:chr5:53006596-53006039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:386
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):7, 49

               
               
               Conread position:189-793
               
               
               Cow position:chr5:46808290-46807682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:190-696
               
               
               Cow position:chr5:41956383-41956887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:193-767
               
               
               Cow position:chr5:26078216-26078800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:194-451
               
               
               Cow position:chr5:28333469-28333724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:194-743
               
               
               Cow position:chr5:28242023-28241475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:206-463
               
               
               Cow position:chr5:14344469-14344712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 100

               
               
               Conread position:232-600
               
               
               Cow position:chr5:41554402-41554764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 55

               
               
               Conread position:232-766
               
               
               Cow position:chr5:18400757-18401303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 72

               
               
               Conread position:232-775
               
               
               Cow position:chr5:1341099-1341643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 59

               
               
               Conread position:232-779
               
               
               Cow position:chr5:30580272-30579712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 187

               
               
               Conread position:232-793
               
               
               Cow position:chr5:2915383-2914821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:232-793
               
               
               Cow position:chr5:46737643-46738203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 14

               
               
               Conread position:236-589
               
               
               Cow position:chr5:27055746-27056105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:238-681
               
               
               Cow position:chr5:34903119-34902676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 66

               
               
               Conread position:238-688
               
               
               Cow position:chr5:54861150-54861572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 55

               
               
               Conread position:238-793
               
               
               Cow position:chr5:44460410-44459853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 62

               
               
               Conread position:239-558
               
               
               Cow position:chr5:52434473-52434164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:239-784
               
               
               Cow position:chr5:69385032-69384482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:240-545
               
               
               Cow position:chr5:48532948-48532651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):249, 62

               
               
               Conread position:242-662
               
               
               Cow position:chr5:39245889-39246309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 58

               
               
               Conread position:246-499
               
               
               Cow position:chr5:51313273-51313525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:259-479
               
               
               Cow position:chr5:47077572-47077365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:260-662
               
               
               Cow position:chr5:59639680-59639284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 51

               
               
               Conread position:268-685
               
               
               Cow position:chr5:32308496-32308913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 36

               
               
               Conread position:272-772
               
               
               Cow position:chr5:29766790-29766280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:281-784
               
               
               Cow position:chr5:46288486-46287986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:310
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:301-501
               
               
               Cow position:chr5:57577170-57576969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 64

               
               
               Conread position:304-780
               
               
               Cow position:chr5:14784508-14784978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 18

               
               
               Conread position:311-484
               
               
               Cow position:chr5:26346479-26346307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:320-728
               
               
               Cow position:chr5:49591251-49591659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 137

               
               
               Conread position:322-767
               
               
               Cow position:chr5:46776916-46776475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 155

               
               
               Conread position:348-655
               
               
               Cow position:chr5:36443858-36444168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 164

               
               
               Conread position:348-793
               
               
               Cow position:chr5:242015-241572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:376-769
               
               
               Cow position:chr5:7274621-7274226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 89

               
               
               Conread position:392-793
               
               
               Cow position:chr5:51335485-51335875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 8

               
               
               Conread position:483-793
               
               
               Cow position:chr5:415032-415346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:3-148
               
               
               Cow position:chr6:617648-617794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:165-562
               
               
               Cow position:chr6:34444071-34443659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:170-772
               
               
               Cow position:chr6:12665173-12665786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 140

               
               
               Conread position:170-779
               
               
               Cow position:chr6:15140032-15140656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 142

               
               
               Conread position:171-465
               
               
               Cow position:chr6:21836046-21836349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:174-494
               
               
               Cow position:chr6:54415512-54415192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 139

               
               
               Conread position:174-613
               
               
               Cow position:chr6:3150404-3149957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 138

               
               
               Conread position:174-660
               
               
               Cow position:chr6:39333728-39334224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 126

               
               
               Conread position:175-793
               
               
               Cow position:chr6:44905609-44905004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:403
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):328, 9

               
               
               Conread position:176-601
               
               
               Cow position:chr6:58065876-58065440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:177-341
               
               
               Cow position:chr6:7140205-7140363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:177-388
               
               
               Cow position:chr6:10250468-10250677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:177-413
               
               
               Cow position:chr6:50468-50712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:177-413
               
               
               Cow position:chr6:29312639-29312398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:177-413
               
               
               Cow position:chr6:66546625-66546386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 91

               
               
               Conread position:177-418
               
               
               Cow position:chr6:28276147-28275900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 136

               
               
               Conread position:177-444
               
               
               Cow position:chr6:1535438-1535712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 120

               
               
               Conread position:177-454
               
               
               Cow position:chr6:31636282-31636559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:177-482
               
               
               Cow position:chr6:36527439-36527128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):58, 134

               
               
               Conread position:177-487
               
               
               Cow position:chr6:17244275-17244577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:177-496
               
               
               Cow position:chr6:11871508-11871832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):44, 123

               
               
               Conread position:177-513
               
               
               Cow position:chr6:18973279-18973612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 60

               
               
               Conread position:177-536
               
               
               Cow position:chr6:39910472-39910106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:177-561
               
               
               Cow position:chr6:65842753-65842371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 47

               
               
               Conread position:177-562
               
               
               Cow position:chr6:7834654-7834270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:177-566
               
               
               Cow position:chr6:17597170-17597578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:177-595
               
               
               Cow position:chr6:4258618-4259034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:177-602
               
               
               Cow position:chr6:51715665-51715244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:177-620
               
               
               Cow position:chr6:34890985-34891438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:177-635
               
               
               Cow position:chr6:13310219-13310682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 309

               
               
               Conread position:177-659
               
               
               Cow position:chr6:28170039-28169550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 72

               
               
               Conread position:177-660
               
               
               Cow position:chr6:703352-702847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-678
               
               
               Cow position:chr6:13316333-13316845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 59

               
               
               Conread position:177-688
               
               
               Cow position:chr6:51731218-51730714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:177-693
               
               
               Cow position:chr6:3276234-3276763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 123

               
               
               Conread position:177-693
               
               
               Cow position:chr6:15278676-15279195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 59

               
               
               Conread position:177-693
               
               
               Cow position:chr6:39438903-39438378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:177-700
               
               
               Cow position:chr6:11273764-11274291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:347
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 302

               
               
               Conread position:177-700
               
               
               Cow position:chr6:38272019-38271506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:177-745
               
               
               Cow position:chr6:68028053-68027480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 57

               
               
               Conread position:177-763
               
               
               Cow position:chr6:47042079-47042656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 35

               
               
               Conread position:177-766
               
               
               Cow position:chr6:28104722-28105314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:177-767
               
               
               Cow position:chr6:330327-330928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:177-767
               
               
               Cow position:chr6:6567722-6567132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:177-767
               
               
               Cow position:chr6:13105198-13104595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 135

               
               
               Conread position:177-767
               
               
               Cow position:chr6:13945047-13944445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-769
               
               
               Cow position:chr6:65929100-65928507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:177-770
               
               
               Cow position:chr6:50635092-50634506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 201

               
               
               Conread position:177-772
               
               
               Cow position:chr6:539109-538524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:177-772
               
               
               Cow position:chr6:43618859-43618248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 311

               
               
               Conread position:177-772
               
               
               Cow position:chr6:44149419-44150023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 144

               
               
               Conread position:177-776
               
               
               Cow position:chr6:24240190-24239586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-779
               
               
               Cow position:chr6:3888368-3888956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:177-792
               
               
               Cow position:chr6:10059992-10059376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:393
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):45, 132

               
               
               Conread position:177-792
               
               
               Cow position:chr6:16635383-16634758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:177-793
               
               
               Cow position:chr6:1821475-1822115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 298

               
               
               Conread position:177-793
               
               
               Cow position:chr6:5948645-5949262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:177-793
               
               
               Cow position:chr6:12530609-12529999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 136

               
               
               Conread position:177-793
               
               
               Cow position:chr6:21973808-21973169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 320

               
               
               Conread position:177-793
               
               
               Cow position:chr6:40553436-40554067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 122

               
               
               Conread position:177-793
               
               
               Cow position:chr6:44000199-43999573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr6:51087079-51086457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:178-769
               
               
               Cow position:chr6:8203314-8202718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:179-525
               
               
               Cow position:chr6:50646048-50646401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 121

               
               
               Conread position:179-575
               
               
               Cow position:chr6:1404450-1404861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:179-688
               
               
               Cow position:chr6:1410516-1411041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:179-745
               
               
               Cow position:chr6:16621560-16620984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:367
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:179-779
               
               
               Cow position:chr6:40276222-40275611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 129

               
               
               Conread position:179-793
               
               
               Cow position:chr6:2375823-2375213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:181-596
               
               
               Cow position:chr6:10644870-10644456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 56

               
               
               Conread position:181-688
               
               
               Cow position:chr6:40866190-40866701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:181-772
               
               
               Cow position:chr6:26669730-26670335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:181-775
               
               
               Cow position:chr6:35875578-35876183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 374

               
               
               Conread position:181-793
               
               
               Cow position:chr6:27528863-27529489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 130

               
               
               Conread position:182-793
               
               
               Cow position:chr6:44032921-44032304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:185-779
               
               
               Cow position:chr6:3487305-3487896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:185-793
               
               
               Cow position:chr6:20559973-20560594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:191-772
               
               
               Cow position:chr6:13848150-13847559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:199-789
               
               
               Cow position:chr6:33899136-33899707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:231-769
               
               
               Cow position:chr6:914708-914171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 174

               
               
               Conread position:231-769
               
               
               Cow position:chr6:52694091-52693564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 62

               
               
               Conread position:231-793
               
               
               Cow position:chr6:43792643-43793198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 5

               
               
               Conread position:232-498
               
               
               Cow position:chr6:28113804-28114060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-685
               
               
               Cow position:chr6:30273821-30274272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 67

               
               
               Conread position:232-760
               
               
               Cow position:chr6:58601557-58601026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 71

               
               
               Conread position:232-768
               
               
               Cow position:chr6:65882286-65881749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:232-793
               
               
               Cow position:chr6:184705-185271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 70

               
               
               Conread position:236-779
               
               
               Cow position:chr6:2953140-2953673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:349
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:238-519
               
               
               Cow position:chr6:44550096-44550365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:238-561
               
               
               Cow position:chr6:46573539-46573861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):232, 53

               
               
               Conread position:238-742
               
               
               Cow position:chr6:8021961-8021460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:239-465
               
               
               Cow position:chr6:44262411-44262647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:239-602
               
               
               Cow position:chr6:31565090-31565451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:243-793
               
               
               Cow position:chr6:59918006-59918559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 57

               
               
               Conread position:245-793
               
               
               Cow position:chr6:6474801-6475360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 59

               
               
               Conread position:262-682
               
               
               Cow position:chr6:1099115-1099531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 42

               
               
               Conread position:262-769
               
               
               Cow position:chr6:11724070-11724571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:262-793
               
               
               Cow position:chr6:27170620-27170092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:263-513
               
               
               Cow position:chr6:15926542-15926790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):204, 36

               
               
               Conread position:263-688
               
               
               Cow position:chr6:56042675-56043102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:272-501
               
               
               Cow position:chr6:33991369-33991590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:299-772
               
               
               Cow position:chr6:16052892-16052413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 180

               
               
               Conread position:305-595
               
               
               Cow position:chr6:6157543-6157267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):248, 23

               
               
               Conread position:323-793
               
               
               Cow position:chr6:185482-185957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 154

               
               
               Conread position:344-595
               
               
               Cow position:chr6:64716951-64716699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 219

               
               
               Conread position:361-787
               
               
               Cow position:chr6:15022156-15021732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):158, 175

               
               
               Conread position:372-776
               
               
               Cow position:chr6:27471536-27471131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 93

               
               
               Conread position:375-766
               
               
               Cow position:chr6:13872134-13871736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 264

               
               
               Conread position:524-769
               
               
               Cow position:chr6:65842369-65842121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 168

               
               
               Conread position:631-764
               
               
               Cow position:chr6:60168515-60168649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:164-562
               
               
               Cow position:chr7:6721388-6720980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 145

               
               
               Conread position:170-779
               
               
               Cow position:chr7:25440737-25440123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:171-767
               
               
               Cow position:chr7:33405017-33405612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:172-553
               
               
               Cow position:chr7:20784741-20785129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:174-793
               
               
               Cow position:chr7:21930369-21929751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 138

               
               
               Conread position:176-413
               
               
               Cow position:chr7:40006624-40006862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 133

               
               
               Conread position:176-769
               
               
               Cow position:chr7:27787859-27787261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 5

               
               
               Conread position:177-367
               
               
               Cow position:chr7:59685015-59684832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 57

               
               
               Conread position:177-391
               
               
               Cow position:chr7:59466743-59466955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):198, 128

               
               
               Conread position:177-412
               
               
               Cow position:chr7:40268744-40268981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 59

               
               
               Conread position:177-413
               
               
               Cow position:chr7:20824553-20824322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:177-440
               
               
               Cow position:chr7:5261695-5261965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 122

               
               
               Conread position:177-454
               
               
               Cow position:chr7:24878652-24878927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 115

               
               
               Conread position:177-474
               
               
               Cow position:chr7:52763510-52763203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-478
               
               
               Cow position:chr7:28567564-28567262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:177-501
               
               
               Cow position:chr7:25251362-25251050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:177-522
               
               
               Cow position:chr7:68334172-68333824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 135

               
               
               Conread position:177-523
               
               
               Cow position:chr7:1609408-1609769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:177-549
               
               
               Cow position:chr7:19990246-19989877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 54

               
               
               Conread position:177-556
               
               
               Cow position:chr7:34150532-34150149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 132

               
               
               Conread position:177-562
               
               
               Cow position:chr7:48805504-48805901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:177-576
               
               
               Cow position:chr7:33332788-33332387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-594
               
               
               Cow position:chr7:3156697-3156267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:177-594
               
               
               Cow position:chr7:30118310-30118736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:177-641
               
               
               Cow position:chr7:11462820-11463291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:177-643
               
               
               Cow position:chr7:21313200-21312727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:309
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):202, 53

               
               
               Conread position:177-685
               
               
               Cow position:chr7:5308885-5309397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 132

               
               
               Conread position:177-685
               
               
               Cow position:chr7:64239775-64240299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-709
               
               
               Cow position:chr7:39097283-39097793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:344
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):18, 138

               
               
               Conread position:177-718
               
               
               Cow position:chr7:13532677-13533233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:177-752
               
               
               Cow position:chr7:546073-545492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:177-759
               
               
               Cow position:chr7:23837805-23837211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:177-759
               
               
               Cow position:chr7:51015491-51014906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:177-767
               
               
               Cow position:chr7:27101061-27101666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:177-768
               
               
               Cow position:chr7:54643264-54643856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:177-769
               
               
               Cow position:chr7:21233779-21234384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-770
               
               
               Cow position:chr7:53364518-53365109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:177-772
               
               
               Cow position:chr7:6647436-6648033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 57

               
               
               Conread position:177-772
               
               
               Cow position:chr7:48635664-48635061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 319

               
               
               Conread position:177-775
               
               
               Cow position:chr7:10430194-10430798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 125

               
               
               Conread position:177-775
               
               
               Cow position:chr7:24807244-24807835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 47

               
               
               Conread position:177-775
               
               
               Cow position:chr7:65457957-65458543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 136

               
               
               Conread position:177-776
               
               
               Cow position:chr7:1371415-1372026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:177-779
               
               
               Cow position:chr7:45947910-45948533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:177-779
               
               
               Cow position:chr7:55536697-55537303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 135

               
               
               Conread position:177-787
               
               
               Cow position:chr7:57563869-57564477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 141

               
               
               Conread position:177-789
               
               
               Cow position:chr7:58994814-58994200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 126

               
               
               Conread position:177-789
               
               
               Cow position:chr7:63556162-63555568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:177-792
               
               
               Cow position:chr7:67800052-67799439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr7:526200-525580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 127

               
               
               Conread position:177-793
               
               
               Cow position:chr7:14138366-14138992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr7:38398045-38397417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 126

               
               
               Conread position:177-793
               
               
               Cow position:chr7:59680082-59679454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:178-767
               
               
               Cow position:chr7:20798214-20798812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:178-788
               
               
               Cow position:chr7:21126434-21127050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 133

               
               
               Conread position:178-793
               
               
               Cow position:chr7:11447792-11447159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:179-793
               
               
               Cow position:chr7:15647-16271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:179-793
               
               
               Cow position:chr7:65812048-65811439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 55

               
               
               Conread position:180-663
               
               
               Cow position:chr7:20533175-20532696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:323
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:181-472
               
               
               Cow position:chr7:45915596-45915316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:181-495
               
               
               Cow position:chr7:66905947-66905628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 119

               
               
               Conread position:181-635
               
               
               Cow position:chr7:42871368-42870905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:181-741
               
               
               Cow position:chr7:26870677-26870121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:353
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:181-771
               
               
               Cow position:chr7:27583499-27584093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:181-771
               
               
               Cow position:chr7:67489926-67489330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:181-779
               
               
               Cow position:chr7:34487139-34486534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:181-789
               
               
               Cow position:chr7:39554265-39554854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 57

               
               
               Conread position:181-793
               
               
               Cow position:chr7:39792994-39792376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:184-674
               
               
               Cow position:chr7:5663773-5663287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:329
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:185-793
               
               
               Cow position:chr7:8144013-8144636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:187-479
               
               
               Cow position:chr7:47164533-47164248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):29, 104

               
               
               Conread position:190-793
               
               
               Cow position:chr7:53407813-53407232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:191-446
               
               
               Cow position:chr7:6630093-6630347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:193-769
               
               
               Cow position:chr7:63386942-63386364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:199-477
               
               
               Cow position:chr7:27128553-27128277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:199-793
               
               
               Cow position:chr7:20514572-20515170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:201-793
               
               
               Cow position:chr7:21852628-21853229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 96

               
               
               Conread position:205-792
               
               
               Cow position:chr7:67676291-67675719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:212-494
               
               
               Cow position:chr7:58376690-58376968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:230-446
               
               
               Cow position:chr7:49829454-49829672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 64

               
               
               Conread position:230-767
               
               
               Cow position:chr7:995687-995152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:231-793
               
               
               Cow position:chr7:61578629-61578057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 483

               
               
               Conread position:232-379
               
               
               Cow position:chr7:1403295-1403438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:232-612
               
               
               Cow position:chr7:29368858-29369237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 71

               
               
               Conread position:232-651
               
               
               Cow position:chr7:21986591-21986172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 71

               
               
               Conread position:232-779
               
               
               Cow position:chr7:41875110-41875653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:232-789
               
               
               Cow position:chr7:24058612-24058042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:232-793
               
               
               Cow position:chr7:29471622-29471059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 45

               
               
               Conread position:232-793
               
               
               Cow position:chr7:46900917-46901474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 59

               
               
               Conread position:237-403
               
               
               Cow position:chr7:40320070-40319902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):63, 131

               
               
               Conread position:237-413
               
               
               Cow position:chr7:62439582-62439760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:237-429
               
               
               Cow position:chr7:19046578-19046763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:237-689
               
               
               Cow position:chr7:67429732-67429282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:238-643
               
               
               Cow position:chr7:1452805-1452396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 49

               
               
               Conread position:241-779
               
               
               Cow position:chr7:40124516-40123972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:334
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):158, 69

               
               
               Conread position:262-791
               
               
               Cow position:chr7:68359083-68358576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:343
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):248, 42

               
               
               Conread position:263-751
               
               
               Cow position:chr7:53358101-53358590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 41

               
               
               Conread position:263-793
               
               
               Cow position:chr7:7210863-7211389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:265-767
               
               
               Cow position:chr7:15810327-15810848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 23

               
               
               Conread position:274-660
               
               
               Cow position:chr7:445228-445604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 29

               
               
               Conread position:282-662
               
               
               Cow position:chr7:22187454-22187820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):139, 28

               
               
               Conread position:312-769
               
               
               Cow position:chr7:49777146-49777591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:290
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):133, 17

               
               
               Conread position:318-767
               
               
               Cow position:chr7:7258255-7257802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 95

               
               
               Conread position:329-793
               
               
               Cow position:chr7:60794228-60794699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 326

               
               
               Conread position:498-793
               
               
               Cow position:chr7:60459545-60459839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:539-793
               
               
               Cow position:chr7:20304632-20304881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:548-770
               
               
               Cow position:chr7:33072444-33072667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:568-793
               
               
               Cow position:chr7:21320985-21320758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 170

               
               
               Conread position:170-414
               
               
               Cow position:chr8:20278447-20278207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):157, 67

               
               
               Conread position:170-479
               
               
               Cow position:chr8:51507640-51507954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 130

               
               
               Conread position:174-486
               
               
               Cow position:chr8:47887301-47886992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:174-779
               
               
               Cow position:chr8:50929697-50930325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 554

               
               
               Conread position:177-357
               
               
               Cow position:chr8:53427910-53427727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:177-391
               
               
               Cow position:chr8:21230496-21230281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:177-454
               
               
               Cow position:chr8:47674260-47673983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 119

               
               
               Conread position:177-468
               
               
               Cow position:chr8:14631254-14631549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-468
               
               
               Cow position:chr8:46218324-46218614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:177-476
               
               
               Cow position:chr8:19190077-19189772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):58, 125

               
               
               Conread position:177-495
               
               
               Cow position:chr8:25377398-25377075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-496
               
               
               Cow position:chr8:25437740-25437410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:177-500
               
               
               Cow position:chr8:1347838-1348176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 317

               
               
               Conread position:177-510
               
               
               Cow position:chr8:21157376-21157713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 57

               
               
               Conread position:177-523
               
               
               Cow position:chr8:58185174-58185513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:177-562
               
               
               Cow position:chr8:19331129-19330737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:177-572
               
               
               Cow position:chr8:13491781-13491385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:177-583
               
               
               Cow position:chr8:10742252-10742664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-586
               
               
               Cow position:chr8:42469079-42468662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:177-594
               
               
               Cow position:chr8:22128988-22128563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 133

               
               
               Conread position:177-595
               
               
               Cow position:chr8:3786053-3785626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:177-638
               
               
               Cow position:chr8:53430453-53430022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):367, 60

               
               
               Conread position:177-680
               
               
               Cow position:chr8:38392057-38391562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:177-718
               
               
               Cow position:chr8:32041347-32041883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 40

               
               
               Conread position:177-767
               
               
               Cow position:chr8:2887165-2886565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 171

               
               
               Conread position:177-767
               
               
               Cow position:chr8:10749773-10749186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:177-769
               
               
               Cow position:chr8:5017596-5016993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-769
               
               
               Cow position:chr8:49859349-49859948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 221

               
               
               Conread position:177-769
               
               
               Cow position:chr8:50287512-50288108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 59

               
               
               Conread position:177-769
               
               
               Cow position:chr8:59261512-59262104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 59

               
               
               Conread position:177-772
               
               
               Cow position:chr8:22570893-22571499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 132

               
               
               Conread position:177-772
               
               
               Cow position:chr8:32436669-32437274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 131

               
               
               Conread position:177-772
               
               
               Cow position:chr8:32630620-32631217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:177-772
               
               
               Cow position:chr8:38605795-38606385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 49

               
               
               Conread position:177-772
               
               
               Cow position:chr8:47068384-47068996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-775
               
               
               Cow position:chr8:17312445-17311833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 135

               
               
               Conread position:177-775
               
               
               Cow position:chr8:33589794-33589183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-779
               
               
               Cow position:chr8:1320455-1319844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:177-779
               
               
               Cow position:chr8:8400698-8401311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:177-779
               
               
               Cow position:chr8:8911896-8911312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 60

               
               
               Conread position:177-779
               
               
               Cow position:chr8:14927467-14928075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 139

               
               
               Conread position:177-788
               
               
               Cow position:chr8:25523815-25523203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 132

               
               
               Conread position:177-788
               
               
               Cow position:chr8:25775256-25775871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-788
               
               
               Cow position:chr8:39194802-39195413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:177-789
               
               
               Cow position:chr8:8309020-8308390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 211

               
               
               Conread position:177-793
               
               
               Cow position:chr8:24914920-24915546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr8:32318136-32318761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 58

               
               
               Conread position:177-793
               
               
               Cow position:chr8:38584932-38585537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:177-793
               
               
               Cow position:chr8:46051595-46050977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-793
               
               
               Cow position:chr8:47660904-47661530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:178-767
               
               
               Cow position:chr8:9736657-9736062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 133

               
               
               Conread position:178-793
               
               
               Cow position:chr8:42485331-42484708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:178-793
               
               
               Cow position:chr8:45691597-45692228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:179-474
               
               
               Cow position:chr8:47454185-47454486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):55, 106

               
               
               Conread position:179-566
               
               
               Cow position:chr8:2447628-2447246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 54

               
               
               Conread position:179-703
               
               
               Cow position:chr8:61906575-61906039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:179-752
               
               
               Cow position:chr8:34349085-34348504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 127

               
               
               Conread position:179-767
               
               
               Cow position:chr8:1152888-1153494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 320

               
               
               Conread position:179-793
               
               
               Cow position:chr8:27579809-27579186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:179-793
               
               
               Cow position:chr8:37932505-37931880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:181-588
               
               
               Cow position:chr8:36635095-36635502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 55

               
               
               Conread position:181-636
               
               
               Cow position:chr8:29008049-29007591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:181-767
               
               
               Cow position:chr8:28877689-28878280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:181-784
               
               
               Cow position:chr8:44662291-44662888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:181-789
               
               
               Cow position:chr8:42747372-42747981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:412
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:181-793
               
               
               Cow position:chr8:4687815-4687192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:181-793
               
               
               Cow position:chr8:25409140-25408520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:182-790
               
               
               Cow position:chr8:11763339-11762732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:182-792
               
               
               Cow position:chr8:46108946-46109538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:373
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):355, 47

               
               
               Conread position:183-495
               
               
               Cow position:chr8:12801818-12801506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:183-682
               
               
               Cow position:chr8:25417446-25417954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 128

               
               
               Conread position:184-595
               
               
               Cow position:chr8:51666422-51666834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:186-772
               
               
               Cow position:chr8:8555741-8556337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 123

               
               
               Conread position:187-767
               
               
               Cow position:chr8:6064381-6064953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 47

               
               
               Conread position:190-779
               
               
               Cow position:chr8:50995166-50994579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:191-530
               
               
               Cow position:chr8:45450693-45450361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:192-465
               
               
               Cow position:chr8:42870266-42869989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 241

               
               
               Conread position:192-513
               
               
               Cow position:chr8:32647765-32647445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:192-772
               
               
               Cow position:chr8:11968868-11969469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 55

               
               
               Conread position:193-766
               
               
               Cow position:chr8:36919783-36919238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:373
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:194-501
               
               
               Cow position:chr8:47668721-47669027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 110

               
               
               Conread position:197-595
               
               
               Cow position:chr8:42158596-42158993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 108

               
               
               Conread position:204-637
               
               
               Cow position:chr8:4785493-4785923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:213-770
               
               
               Cow position:chr8:46146968-46147523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:232-480
               
               
               Cow position:chr8:41945067-41944819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 230

               
               
               Conread position:232-556
               
               
               Cow position:chr8:19865597-19865284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):279, 29

               
               
               Conread position:232-627
               
               
               Cow position:chr8:12801480-12801087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:232-760
               
               
               Cow position:chr8:13503467-13502953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:329
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):126, 68

               
               
               Conread position:232-772
               
               
               Cow position:chr8:56883875-56883315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 357

               
               
               Conread position:232-779
               
               
               Cow position:chr8:14590548-14591098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 71

               
               
               Conread position:232-783
               
               
               Cow position:chr8:8315107-8315666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:232-793
               
               
               Cow position:chr8:7162249-7161687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 71

               
               
               Conread position:232-793
               
               
               Cow position:chr8:44243231-44243778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 71

               
               
               Conread position:237-458
               
               
               Cow position:chr8:45450120-45449908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:237-793
               
               
               Cow position:chr8:59141672-59141116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:238-557
               
               
               Cow position:chr8:21584577-21584259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):281, 72

               
               
               Conread position:238-772
               
               
               Cow position:chr8:30890969-30891506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 62

               
               
               Conread position:238-793
               
               
               Cow position:chr8:60061730-60061172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 51

               
               
               Conread position:241-748
               
               
               Cow position:chr8:32815544-32816056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:324
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:262-793
               
               
               Cow position:chr8:30487063-30487590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 24

               
               
               Conread position:269-499
               
               
               Cow position:chr8:47683109-47682882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:300-775
               
               
               Cow position:chr8:11832999-11832517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 411

               
               
               Conread position:304-793
               
               
               Cow position:chr8:2170090-2170581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 163

               
               
               Conread position:326-772
               
               
               Cow position:chr8:20136349-20136796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:287
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):185, 281

               
               
               Conread position:359-792
               
               
               Cow position:chr8:49215670-49215231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 350

               
               
               Conread position:373-760
               
               
               Cow position:chr8:46539746-46540124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):187, 130

               
               
               Conread position:424-788
               
               
               Cow position:chr8:47082029-47081663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 207

               
               
               Conread position:482-769
               
               
               Cow position:chr8:46943802-46944094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 126

               
               
               Conread position:526-793
               
               
               Cow position:chr8:12450014-12449742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 213

               
               
               Conread position:544-772
               
               
               Cow position:chr8:9668927-9668699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:570-793
               
               
               Cow position:chr8:45216809-45216588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:586-779
               
               
               Cow position:chr8:36635543-36635738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 118

               
               
               Conread position:608-793
               
               
               Cow position:chr8:19330718-19330531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:622-789
               
               
               Cow position:chr8:16427061-16426895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:631-793
               
               
               Cow position:chr8:10742662-10742825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:1-151
               
               
               Cow position:chr9:31061130-31061279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:164-501
               
               
               Cow position:chr9:3804633-3804282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:171-677
               
               
               Cow position:chr9:35315806-35316295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 142

               
               
               Conread position:174-718
               
               
               Cow position:chr9:17304907-17305460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:174-767
               
               
               Cow position:chr9:17063313-17063920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:174-793
               
               
               Cow position:chr9:18508752-18509357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 62

               
               
               Conread position:174-793
               
               
               Cow position:chr9:51181107-51181743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 121

               
               
               Conread position:176-791
               
               
               Cow position:chr9:9706611-9705993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:176-793
               
               
               Cow position:chr9:9014152-9013543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 46

               
               
               Conread position:176-793
               
               
               Cow position:chr9:44819216-44818621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 135

               
               
               Conread position:176-793
               
               
               Cow position:chr9:52292468-52291867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:177-387
               
               
               Cow position:chr9:1995323-1995540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 125

               
               
               Conread position:177-426
               
               
               Cow position:chr9:30488661-30488408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:177-466
               
               
               Cow position:chr9:3963063-3963353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 102

               
               
               Conread position:177-478
               
               
               Cow position:chr9:4283034-4282738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 128

               
               
               Conread position:177-485
               
               
               Cow position:chr9:59428077-59427791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:177-498
               
               
               Cow position:chr9:21410364-21410034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 148

               
               
               Conread position:177-606
               
               
               Cow position:chr9:650960-651384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 63

               
               
               Conread position:177-620
               
               
               Cow position:chr9:27935444-27934995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 57

               
               
               Conread position:177-625
               
               
               Cow position:chr9:4649538-4649983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:177-641
               
               
               Cow position:chr9:28655415-28654950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:319
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):45, 118

               
               
               Conread position:177-642
               
               
               Cow position:chr9:22432340-22431873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 107

               
               
               Conread position:177-680
               
               
               Cow position:chr9:1981340-1980828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 88

               
               
               Conread position:177-768
               
               
               Cow position:chr9:60276951-60277549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-769
               
               
               Cow position:chr9:28022873-28022270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:177-769
               
               
               Cow position:chr9:37970140-37970730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 46

               
               
               Conread position:177-771
               
               
               Cow position:chr9:29329703-29329124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 85

               
               
               Conread position:177-771
               
               
               Cow position:chr9:54925615-54925016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:177-772
               
               
               Cow position:chr9:45874405-45873808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:177-772
               
               
               Cow position:chr9:50729071-50729654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 110

               
               
               Conread position:177-773
               
               
               Cow position:chr9:16176836-16176233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:177-775
               
               
               Cow position:chr9:3764066-3763464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:177-775
               
               
               Cow position:chr9:27035750-27035142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:177-775
               
               
               Cow position:chr9:42310745-42310147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 134

               
               
               Conread position:177-779
               
               
               Cow position:chr9:5005036-5004437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-779
               
               
               Cow position:chr9:6250366-6249755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-779
               
               
               Cow position:chr9:29027144-29027746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:177-779
               
               
               Cow position:chr9:30673442-30672822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 160

               
               
               Conread position:177-792
               
               
               Cow position:chr9:10937662-10937021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 135

               
               
               Conread position:177-793
               
               
               Cow position:chr9:130097-130747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:417
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 362

               
               
               Conread position:177-793
               
               
               Cow position:chr9:221445-222087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 221

               
               
               Conread position:177-793
               
               
               Cow position:chr9:3005172-3005803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:177-793
               
               
               Cow position:chr9:3543917-3543286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 59

               
               
               Conread position:177-793
               
               
               Cow position:chr9:10322870-10322247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 131

               
               
               Conread position:177-793
               
               
               Cow position:chr9:22654643-22654014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 360

               
               
               Conread position:177-793
               
               
               Cow position:chr9:28679039-28678414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr9:31808644-31808012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-793
               
               
               Cow position:chr9:32970014-32969392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:177-793
               
               
               Cow position:chr9:47003253-47002637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 126

               
               
               Conread position:177-793
               
               
               Cow position:chr9:59481729-59482359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:178-562
               
               
               Cow position:chr9:33243263-33243663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:277
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:178-767
               
               
               Cow position:chr9:4942746-4943345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 128

               
               
               Conread position:178-793
               
               
               Cow position:chr9:5515486-5514867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 132

               
               
               Conread position:178-793
               
               
               Cow position:chr9:25188166-25187547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 136

               
               
               Conread position:178-793
               
               
               Cow position:chr9:25632952-25633566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:178-793
               
               
               Cow position:chr9:29627691-29628305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 53

               
               
               Conread position:179-411
               
               
               Cow position:chr9:5141777-5141546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:179-760
               
               
               Cow position:chr9:3148211-3148796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:179-779
               
               
               Cow position:chr9:1250935-1251544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 45

               
               
               Conread position:181-688
               
               
               Cow position:chr9:12063052-12062549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:337
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:181-769
               
               
               Cow position:chr9:37161749-37162348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:182-772
               
               
               Cow position:chr9:1075154-1075735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:182-772
               
               
               Cow position:chr9:2866907-2867513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:395
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):19, 165

               
               
               Conread position:185-641
               
               
               Cow position:chr9:25034651-25035118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:189-793
               
               
               Cow position:chr9:51211729-51211123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:200-467
               
               
               Cow position:chr9:30435616-30435341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:200-694
               
               
               Cow position:chr9:26102060-26102543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:209-772
               
               
               Cow position:chr9:34722927-34722367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 23

               
               
               Conread position:211-764
               
               
               Cow position:chr9:43664814-43664283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 24

               
               
               Conread position:231-780
               
               
               Cow position:chr9:2476760-2476223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 49

               
               
               Conread position:232-479
               
               
               Cow position:chr9:12390164-12390408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:232-556
               
               
               Cow position:chr9:39731056-39731373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 46

               
               
               Conread position:232-683
               
               
               Cow position:chr9:13474783-13475245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:232-751
               
               
               Cow position:chr9:45151178-45150668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:337
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):189, 56

               
               
               Conread position:232-779
               
               
               Cow position:chr9:3167930-3167402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:351
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):147, 64

               
               
               Conread position:232-793
               
               
               Cow position:chr9:2172057-2171504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 363

               
               
               Conread position:237-503
               
               
               Cow position:chr9:32296248-32296505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:237-511
               
               
               Cow position:chr9:8165882-8166154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:237-765
               
               
               Cow position:chr9:2053755-2053225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:238-563
               
               
               Cow position:chr9:16629671-16629991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):276, 62

               
               
               Conread position:238-646
               
               
               Cow position:chr9:25903506-25903102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):224, 62

               
               
               Conread position:238-745
               
               
               Cow position:chr9:7061083-7061588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 62

               
               
               Conread position:268-507
               
               
               Cow position:chr9:9825119-9824883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):202, 32

               
               
               Conread position:272-501
               
               
               Cow position:chr9:39942390-39942172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:296-767
               
               
               Cow position:chr9:20308210-20308682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 16

               
               
               Conread position:335-779
               
               
               Cow position:chr9:42569807-42569358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 212

               
               
               Conread position:349-769
               
               
               Cow position:chr9:59173258-59173681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 130

               
               
               Conread position:385-789
               
               
               Cow position:chr9:23816839-23816442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:428-767
               
               
               Cow position:chr9:3998822-3998479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:461-789
               
               
               Cow position:chr9:53701952-53702283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 233

               
               
               Conread position:582-793
               
               
               Cow position:chr9:9329442-9329654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):57, 179

               
               
               Conread position:1-172
               
               
               Cow position:chrX:731235-731064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:170-620
               
               
               Cow position:chrX:23132948-23132499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:170-767
               
               
               Cow position:chrX:22618329-22618926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 64

               
               
               Conread position:172-793
               
               
               Cow position:chrX:13075726-13076350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 5

               
               
               Conread position:174-467
               
               
               Cow position:chrX:15308958-15309250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:176-779
               
               
               Cow position:chrX:30365809-30366406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 138

               
               
               Conread position:177-367
               
               
               Cow position:chrX:35940288-35940472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:177-409
               
               
               Cow position:chrX:8574517-8574742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:177-411
               
               
               Cow position:chrX:3467673-3467902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:177-411
               
               
               Cow position:chrX:15623527-15623764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 132

               
               
               Conread position:177-413
               
               
               Cow position:chrX:30058023-30057784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):59, 120

               
               
               Conread position:177-458
               
               
               Cow position:chrX:674229-674518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):57, 83

               
               
               Conread position:177-478
               
               
               Cow position:chrX:26426609-26426899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:177-513
               
               
               Cow position:chrX:41102493-41102834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:177-536
               
               
               Cow position:chrX:2011728-2012092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:177-566
               
               
               Cow position:chrX:21731787-21732183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):44, 135

               
               
               Conread position:177-582
               
               
               Cow position:chrX:2577399-2576981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:177-586
               
               
               Cow position:chrX:28560919-28561333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:177-602
               
               
               Cow position:chrX:2103158-2102725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 132

               
               
               Conread position:177-625
               
               
               Cow position:chrX:13182153-13182602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 130

               
               
               Conread position:177-642
               
               
               Cow position:chrX:44388736-44388270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 125

               
               
               Conread position:177-647
               
               
               Cow position:chrX:27316249-27315769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:177-664
               
               
               Cow position:chrX:17666811-17667302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:177-675
               
               
               Cow position:chrX:12314778-12315291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 139

               
               
               Conread position:177-683
               
               
               Cow position:chrX:38148569-38148051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:177-685
               
               
               Cow position:chrX:7031436-7030915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-742
               
               
               Cow position:chrX:21269082-21269656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-762
               
               
               Cow position:chrX:28554584-28553996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:177-764
               
               
               Cow position:chrX:30182966-30183547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 132

               
               
               Conread position:177-767
               
               
               Cow position:chrX:6872097-6872700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:177-767
               
               
               Cow position:chrX:8480624-8480023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:177-767
               
               
               Cow position:chrX:9009312-9008711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:177-767
               
               
               Cow position:chrX:16276620-16276022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-767
               
               
               Cow position:chrX:16362149-16362751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 310

               
               
               Conread position:177-767
               
               
               Cow position:chrX:22816833-22816222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 548

               
               
               Conread position:177-767
               
               
               Cow position:chrX:29910456-29911052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 114

               
               
               Conread position:177-769
               
               
               Cow position:chrX:21830503-21829902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 122

               
               
               Conread position:177-771
               
               
               Cow position:chrX:11148363-11148964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:177-771
               
               
               Cow position:chrX:24134286-24134886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:177-771
               
               
               Cow position:chrX:26766227-26766828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:177-772
               
               
               Cow position:chrX:2605029-2604416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:177-772
               
               
               Cow position:chrX:3420238-3420822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 57

               
               
               Conread position:177-772
               
               
               Cow position:chrX:8589135-8588546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 133

               
               
               Conread position:177-772
               
               
               Cow position:chrX:29286407-29285809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 159

               
               
               Conread position:177-772
               
               
               Cow position:chrX:32066194-32066794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 131

               
               
               Conread position:177-775
               
               
               Cow position:chrX:16700292-16699672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 342

               
               
               Conread position:177-775
               
               
               Cow position:chrX:23277997-23277388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-777
               
               
               Cow position:chrX:4752653-4753240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:397
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):58, 125

               
               
               Conread position:177-779
               
               
               Cow position:chrX:6013977-6014552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 59

               
               
               Conread position:177-779
               
               
               Cow position:chrX:22489117-22488509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:177-779
               
               
               Cow position:chrX:26528948-26528339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 131

               
               
               Conread position:177-779
               
               
               Cow position:chrX:26757641-26758242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:177-779
               
               
               Cow position:chrX:29852595-29853204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:177-789
               
               
               Cow position:chrX:13416459-13417073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 138

               
               
               Conread position:177-789
               
               
               Cow position:chrX:24195438-24196031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:388
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:177-792
               
               
               Cow position:chrX:321439-320818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 134

               
               
               Conread position:177-792
               
               
               Cow position:chrX:971753-971123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-792
               
               
               Cow position:chrX:34245816-34246433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:384
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 131

               
               
               Conread position:177-793
               
               
               Cow position:chrX:1834791-1834165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:177-793
               
               
               Cow position:chrX:13412160-13412785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 122

               
               
               Conread position:177-793
               
               
               Cow position:chrX:15126253-15126889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 126

               
               
               Conread position:177-793
               
               
               Cow position:chrX:16015447-16016077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 391

               
               
               Conread position:177-793
               
               
               Cow position:chrX:18952709-18953334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:177-793
               
               
               Cow position:chrX:23040150-23040775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 135

               
               
               Conread position:177-793
               
               
               Cow position:chrX:30070696-30070096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:389
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):342, 40

               
               
               Conread position:177-793
               
               
               Cow position:chrX:31186243-31186877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 147

               
               
               Conread position:177-793
               
               
               Cow position:chrX:39562960-39563586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 105

               
               
               Conread position:177-793
               
               
               Cow position:chrX:41888022-41888639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 59

               
               
               Conread position:178-511
               
               
               Cow position:chrX:16780264-16779941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):145, 45

               
               
               Conread position:178-772
               
               
               Cow position:chrX:29885962-29885361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:387
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:178-772
               
               
               Cow position:chrX:35530825-35530230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 56

               
               
               Conread position:178-779
               
               
               Cow position:chrX:30231125-30231737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:178-792
               
               
               Cow position:chrX:12668778-12669392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:179-450
               
               
               Cow position:chrX:13397248-13397524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 45

               
               
               Conread position:179-462
               
               
               Cow position:chrX:10745182-10745468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:179-567
               
               
               Cow position:chrX:14460495-14460100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:179-588
               
               
               Cow position:chrX:979567-979149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:179-596
               
               
               Cow position:chrX:12653552-12653980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 155

               
               
               Conread position:179-601
               
               
               Cow position:chrX:3374937-3375364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:179-751
               
               
               Cow position:chrX:23071659-23071091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:361
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:179-767
               
               
               Cow position:chrX:983635-983035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:179-767
               
               
               Cow position:chrX:2561888-2562484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:179-767
               
               
               Cow position:chrX:12702732-12703331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:179-767
               
               
               Cow position:chrX:15979987-15980583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 121

               
               
               Conread position:179-767
               
               
               Cow position:chrX:27425354-27425947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:179-767
               
               
               Cow position:chrX:29172791-29173388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:179-767
               
               
               Cow position:chrX:37813123-37812534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 45

               
               
               Conread position:179-772
               
               
               Cow position:chrX:3084166-3084754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 52

               
               
               Conread position:179-772
               
               
               Cow position:chrX:5394034-5394633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:179-789
               
               
               Cow position:chrX:5335514-5336135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:179-789
               
               
               Cow position:chrX:28585951-28585331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:179-793
               
               
               Cow position:chrX:9126332-9125710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:179-793
               
               
               Cow position:chrX:12287432-12288056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:179-793
               
               
               Cow position:chrX:17477453-17478078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:179-793
               
               
               Cow position:chrX:34346195-34345585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 105

               
               
               Conread position:179-793
               
               
               Cow position:chrX:37849960-37849360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 45

               
               
               Conread position:181-763
               
               
               Cow position:chrX:1547948-1547357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 132

               
               
               Conread position:183-793
               
               
               Cow position:chrX:7752867-7752246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:185-471
               
               
               Cow position:chrX:11086323-11086615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:185-693
               
               
               Cow position:chrX:16811480-16811996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:185-767
               
               
               Cow position:chrX:15178471-15179052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 49

               
               
               Conread position:185-793
               
               
               Cow position:chrX:2481666-2482282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:185-793
               
               
               Cow position:chrX:12354200-12353587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:186-767
               
               
               Cow position:chrX:29778547-29779121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:385
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:186-793
               
               
               Cow position:chrX:12343900-12343301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:187-767
               
               
               Cow position:chrX:6281791-6282380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 255

               
               
               Conread position:187-793
               
               
               Cow position:chrX:4411611-4411020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:409
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:191-626
               
               
               Cow position:chrX:18553389-18552946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:191-772
               
               
               Cow position:chrX:4797284-4796687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 122

               
               
               Conread position:201-767
               
               
               Cow position:chrX:5305098-5304530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:201-772
               
               
               Cow position:chrX:20315114-20315694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 33

               
               
               Conread position:201-793
               
               
               Cow position:chrX:13096332-13096924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 31

               
               
               Conread position:206-772
               
               
               Cow position:chrX:21589908-21589337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:208-793
               
               
               Cow position:chrX:23213415-23214006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 28

               
               
               Conread position:211-793
               
               
               Cow position:chrX:31494348-31493767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:231-425
               
               
               Cow position:chrX:10416544-10416738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:232-378
               
               
               Cow position:chrX:505419-505563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:232-493
               
               
               Cow position:chrX:29793122-29793382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:232-568
               
               
               Cow position:chrX:26999496-26999169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:232-744
               
               
               Cow position:chrX:13053917-13053408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 30

               
               
               Conread position:232-769
               
               
               Cow position:chrX:28650643-28651173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 70

               
               
               Conread position:232-779
               
               
               Cow position:chrX:21059693-21059146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 71

               
               
               Conread position:232-779
               
               
               Cow position:chrX:35386270-35386814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:375
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:232-793
               
               
               Cow position:chrX:29097105-29096555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:237-452
               
               
               Cow position:chrX:34219215-34219004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:238-749
               
               
               Cow position:chrX:30170927-30171441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 74

               
               
               Conread position:240-587
               
               
               Cow position:chrX:33707336-33706989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):242, 71

               
               
               Conread position:263-475
               
               
               Cow position:chrX:24377877-24377662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:263-746
               
               
               Cow position:chrX:25562717-25563199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:274-792
               
               
               Cow position:chrX:17727464-17726945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:325
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):166, 27

               
               
               Conread position:276-790
               
               
               Cow position:chrX:22512864-22513365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 35

               
               
               Conread position:276-792
               
               
               Cow position:chrX:24523612-24523122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:334
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 24

               
               
               Conread position:282-792
               
               
               Cow position:chrX:23957921-23957425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):233, 11

               
               
               Conread position:292-779
               
               
               Cow position:chrX:15599817-15599327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 30

               
               
               Conread position:297-775
               
               
               Cow position:chrX:20720844-20720355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 418

               
               
               Conread position:303-772
               
               
               Cow position:chrX:22524760-22525236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 441

               
               
               Conread position:305-767
               
               
               Cow position:chrX:26399340-26399808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 172

               
               
               Conread position:317-642
               
               
               Cow position:chrX:17052034-17051706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):64, 8

               
               
               Conread position:417-793
               
               
               Cow position:chrX:12654034-12654415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 62

               
               
               Conread position:432-747
               
               
               Cow position:chrX:21490897-21490576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 157

               
               
               Conread position:449-787
               
               
               Cow position:chrX:24615743-24616079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 77

               
               
               Conread position:485-775
               
               
               Cow position:chrX:21223586-21223290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):30, 224

               
               
               Conread position:518-768
               
               
               Cow position:chrX:27495544-27495296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:520-764
               
               
               Cow position:chrX:24377656-24377414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:520-779
               
               
               Cow position:chrX:30057756-30057492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 218
Conread position:	2-175
Cow position:	chr1:63314544-63314368 (view UCSC Genome Browser custom track)
Alignm length:	178
Alignm identity:	134
Alignm E-value:	6e-29
Alignm gaps (pig, cow):	76, 54
Conread position:	4-175
Cow position:	chr1:82383970-82384141 (view UCSC Genome Browser custom track)
Alignm length:	173
Alignm identity:	131
Alignm E-value:	7e-31
Alignm gaps (pig, cow):	74, 135
Conread position:	170-771
Cow position:	chr1:16216450-16217043 (view UCSC Genome Browser custom track)
Alignm length:	615
Alignm identity:	403
Alignm E-value:	0
Alignm gaps (pig, cow):	66, 90
Conread position:	174-590
Cow position:	chr1:24652500-24652090 (view UCSC Genome Browser custom track)
Alignm length:	428
Alignm identity:	293
Alignm E-value:	0
Alignm gaps (pig, cow):	61, 138
Conread position:	174-779
Cow position:	chr1:67292850-67292242 (view UCSC Genome Browser custom track)
Alignm length:	621
Alignm identity:	395
Alignm E-value:	0
Alignm gaps (pig, cow):	59, 101
Conread position:	176-545
Cow position:	chr1:30519818-30519433 (view UCSC Genome Browser custom track)
Alignm length:	392
Alignm identity:	273
Alignm E-value:	8.96831e-44
Alignm gaps (pig, cow):	24, 114
Conread position:	177-399
Cow position:	chr1:39545005-39544783 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	154
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	38, 128
Conread position:	177-410
Cow position:	chr1:13877265-13877500 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	170
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	52, 44
Conread position:	177-413
Cow position:	chr1:84227026-84226784 (view UCSC Genome Browser custom track)
Alignm length:	246
Alignm identity:	182
Alignm E-value:	1e-37
Alignm gaps (pig, cow):	56, 134
Conread position:	177-442
Cow position:	chr1:33713288-33713021 (view UCSC Genome Browser custom track)
Alignm length:	275
Alignm identity:	190
Alignm E-value:	2e-30
Alignm gaps (pig, cow):	56, 131
Conread position:	177-444
Cow position:	chr1:32566706-32566975 (view UCSC Genome Browser custom track)
Alignm length:	274
Alignm identity:	189
Alignm E-value:	8e-32
Alignm gaps (pig, cow):	20, 132
Conread position:	177-455
Cow position:	chr1:22619423-22619702 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	189
Alignm E-value:	4e-25
Alignm gaps (pig, cow):	19, 91
Conread position:	177-475
Cow position:	chr1:34693901-34693605 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	220
Alignm E-value:	8.96831e-44
Alignm gaps (pig, cow):	55, 128
Conread position:	177-477
Cow position:	chr1:3934039-3934347 (view UCSC Genome Browser custom track)
Alignm length:	313
Alignm identity:	224
Alignm E-value:	2.99878e-43
Alignm gaps (pig, cow):	59, 135
Conread position:	177-495
Cow position:	chr1:38419891-38419571 (view UCSC Genome Browser custom track)
Alignm length:	330
Alignm identity:	235
Alignm E-value:	8.96831e-44
Alignm gaps (pig, cow):	55, 20
Conread position:	177-498
Cow position:	chr1:99315464-99315168 (view UCSC Genome Browser custom track)
Alignm length:	322
Alignm identity:	222
Alignm E-value:	3e-33
Alignm gaps (pig, cow):	52, 0
Conread position:	177-513
Cow position:	chr1:70419163-70419503 (view UCSC Genome Browser custom track)
Alignm length:	347
Alignm identity:	235
Alignm E-value:	4e-37
Alignm gaps (pig, cow):	54, 123
Conread position:	177-529
Cow position:	chr1:77115496-77115842 (view UCSC Genome Browser custom track)
Alignm length:	357
Alignm identity:	246
Alignm E-value:	2.99878e-43
Alignm gaps (pig, cow):	21, 55
Conread position:	177-587
Cow position:	chr1:69404223-69403807 (view UCSC Genome Browser custom track)
Alignm length:	423
Alignm identity:	303
Alignm E-value:	0
Alignm gaps (pig, cow):	59, 29
Conread position:	177-595
Cow position:	chr1:74285570-74285997 (view UCSC Genome Browser custom track)
Alignm length:	431
Alignm identity:	312
Alignm E-value:	0
Alignm gaps (pig, cow):	59, 135