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Cow genome map

           
Conread name:
           
mE6-MI-P-E6-ahk-h-08-1-UM.s1
        

               
Conread position:
               
110-405
               

               
Cow position:
               
chr1:57263463-57263761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
77, 109
               

               
Conread position:
               
119-460
               

               
Cow position:
               
chr1:31811566-31811891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
118, 76
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr1:16217166-16216869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
121-466
               

               
Cow position:
               
chr1:29609173-29608841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
149, 75
               

               
Conread position:
               
123-370
               

               
Cow position:
               
chr1:97226212-97225962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 168
               

               
Conread position:
               
127-465
               

               
Cow position:
               
chr1:40308772-40309103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
71, 136
               

               
Conread position:
               
134-427
               

               
Cow position:
               
chr1:79110997-79111304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
136-363
               

               
Cow position:
               
chr1:80665356-80665585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
111-467
               

               
Cow position:
               
chr10:21883300-21883658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
113-379
               

               
Cow position:
               
chr10:15084510-15084788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 268
               

               
Conread position:
               
113-452
               

               
Cow position:
               
chr10:32557866-32558201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
128, 84
               

               
Conread position:
               
141-463
               

               
Cow position:
               
chr10:42110944-42111269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 144
               

               
Conread position:
               
110-457
               

               
Cow position:
               
chr11:27058970-27058624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
113-398
               

               
Cow position:
               
chr11:32271169-32270875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
76, 183
               

               
Conread position:
               
114-454
               

               
Cow position:
               
chr11:15898794-15898457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
127-465
               

               
Cow position:
               
chr11:19102321-19101993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
116, 74
               

               
Conread position:
               
133-464
               

               
Cow position:
               
chr11:9216905-9216575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
140, 99
               

               
Conread position:
               
155-464
               

               
Cow position:
               
chr11:66727563-66727876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 130
               

               
Conread position:
               
206-465
               

               
Cow position:
               
chr11:54485173-54484910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 76
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr13:15450896-15450546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 37
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr13:34325345-34324989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
82, 149
               

               
Conread position:
               
124-456
               

               
Cow position:
               
chr13:34048850-34049192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 200
               

               
Conread position:
               
126-465
               

               
Cow position:
               
chr13:30244455-30244110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 158
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr14:33673506-33673866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chr14:7472462-7472807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
72, 179
               

               
Conread position:
               
124-348
               

               
Cow position:
               
chr14:30706183-30705955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 162
               

               
Conread position:
               
127-376
               

               
Cow position:
               
chr14:33676884-33677145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 179
               

               
Conread position:
               
127-402
               

               
Cow position:
               
chr14:44287144-44286865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 151
               

               
Conread position:
               
113-367
               

               
Cow position:
               
chr15:21950025-21949777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
115, 79
               

               
Conread position:
               
123-451
               

               
Cow position:
               
chr15:7983922-7983589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
123-460
               

               
Cow position:
               
chr15:524757-524415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
72, 178
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chr15:35735675-35736026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
130-460
               

               
Cow position:
               
chr15:13674632-13674956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
134-460
               

               
Cow position:
               
chr15:369050-368730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
105, 67
               

               
Conread position:
               
171-465
               

               
Cow position:
               
chr15:17218110-17217812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 27
               

               
Conread position:
               
288-465
               

               
Cow position:
               
chr15:2801668-2801493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
123-351
               

               
Cow position:
               
chr16:15566497-15566734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
73, 180
               

               
Conread position:
               
123-370
               

               
Cow position:
               
chr16:24105460-24105714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 137
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chr16:9930692-9931037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chr16:27734019-27733687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
119, 50
               

               
Conread position:
               
127-465
               

               
Cow position:
               
chr16:2727527-2727183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
68, 217
               

               
Conread position:
               
137-376
               

               
Cow position:
               
chr16:41562015-41562255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 68
               

               
Conread position:
               
139-454
               

               
Cow position:
               
chr16:29090508-29090194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
154-436
               

               
Cow position:
               
chr16:19152093-19151801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 144
               

               
Conread position:
               
113-363
               

               
Cow position:
               
chr17:14307745-14307485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
113-427
               

               
Cow position:
               
chr17:3708459-3708133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
152-465
               

               
Cow position:
               
chr17:28018767-28019064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
197-465
               

               
Cow position:
               
chr17:14296580-14296323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 95
               

               
Conread position:
               
123-467
               

               
Cow position:
               
chr18:54170995-54170644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
134-428
               

               
Cow position:
               
chr18:51275485-51275184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 128
               

               
Conread position:
               
112-454
               

               
Cow position:
               
chr19:7069867-7070190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
123-402
               

               
Cow position:
               
chr19:35980688-35980972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chr19:7488858-7489204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
72, 313
               

               
Conread position:
               
139-452
               

               
Cow position:
               
chr19:35385190-35384871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
184-465
               

               
Cow position:
               
chr19:39699076-39699354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
111-428
               

               
Cow position:
               
chr2:74857204-74857523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 114
               

               
Conread position:
               
111-451
               

               
Cow position:
               
chr2:40538454-40538796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
119-402
               

               
Cow position:
               
chr2:36974877-36975161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
82, 38
               

               
Conread position:
               
123-408
               

               
Cow position:
               
chr2:14777835-14777551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
72, 114
               

               
Conread position:
               
134-467
               

               
Cow position:
               
chr2:2451165-2451499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 160
               

               
Conread position:
               
138-461
               

               
Cow position:
               
chr2:289769-289448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
57, 100
               

               
Conread position:
               
143-466
               

               
Cow position:
               
chr2:11692549-11692877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 132
               

               
Conread position:
               
149-408
               

               
Cow position:
               
chr2:38373416-38373678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 128
               

               
Conread position:
               
157-398
               

               
Cow position:
               
chr2:6752843-6752605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
113-318
               

               
Cow position:
               
chr20:3679084-3678881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
121, 54
               

               
Conread position:
               
113-457
               

               
Cow position:
               
chr20:8992728-8992375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
82, 188
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr20:22697761-22698111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 52
               

               
Conread position:
               
139-466
               

               
Cow position:
               
chr20:10840192-10839863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
142-461
               

               
Cow position:
               
chr20:13434066-13433751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
42, 151
               

               
Conread position:
               
149-456
               

               
Cow position:
               
chr20:5230192-5229881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 146
               

               
Conread position:
               
192-379
               

               
Cow position:
               
chr20:29572089-29571902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr21:2883134-2882775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
82, 184
               

               
Conread position:
               
120-457
               

               
Cow position:
               
chr21:39087619-39087959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 45
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chr21:2416830-2417178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
72, 306
               

               
Conread position:
               
123-467
               

               
Cow position:
               
chr21:2502486-2502834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
72, 174
               

               
Conread position:
               
139-465
               

               
Cow position:
               
chr21:25782273-25782606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
155-407
               

               
Cow position:
               
chr21:21024352-21024610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
195-460
               

               
Cow position:
               
chr21:217743-218012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
288-460
               

               
Cow position:
               
chr21:45786622-45786452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
110-465
               

               
Cow position:
               
chr22:1806294-1806639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 175
               

               
Conread position:
               
113-308
               

               
Cow position:
               
chr22:4230401-4230200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
80, 179
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr22:1520581-1520229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
82, 71
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chr22:36861084-36860739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
72, 174
               

               
Conread position:
               
212-454
               

               
Cow position:
               
chr22:40378044-40378280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
113-464
               

               
Cow position:
               
chr23:29403504-29403155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 180
               

               
Conread position:
               
133-465
               

               
Cow position:
               
chr23:4510535-4510858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
113, 47
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr24:38638067-38638415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
60, 90
               

               
Conread position:
               
126-465
               

               
Cow position:
               
chr24:12484786-12484441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
66, 171
               

               
Conread position:
               
126-465
               

               
Cow position:
               
chr24:44018065-44018410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
66, 171
               

               
Conread position:
               
142-457
               

               
Cow position:
               
chr24:6059447-6059769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
155-457
               

               
Cow position:
               
chr24:6065155-6064852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
217-465
               

               
Cow position:
               
chr24:7090340-7090094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
110-464
               

               
Cow position:
               
chr25:11831935-11831592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
79, 119
               

               
Conread position:
               
147-465
               

               
Cow position:
               
chr26:2617274-2616957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
198-461
               

               
Cow position:
               
chr26:11286864-11287115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
113-392
               

               
Cow position:
               
chr27:26376939-26377224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
113-429
               

               
Cow position:
               
chr27:27414304-27414637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 174
               

               
Conread position:
               
119-465
               

               
Cow position:
               
chr27:15123379-15123726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr28:5113814-5113459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
81, 186
               

               
Conread position:
               
119-465
               

               
Cow position:
               
chr28:28473133-28473485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
79, 170
               

               
Conread position:
               
320-465
               

               
Cow position:
               
chr28:9420537-9420394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
57, 94
               

               
Conread position:
               
113-427
               

               
Cow position:
               
chr29:32583933-32583609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
87, 183
               

               
Conread position:
               
121-417
               

               
Cow position:
               
chr29:9619874-9620181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
73, 174
               

               
Conread position:
               
124-464
               

               
Cow position:
               
chr29:3698457-3698802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
133-453
               

               
Cow position:
               
chr29:14085665-14085336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
110-450
               

               
Cow position:
               
chr3:21148355-21148024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
110-465
               

               
Cow position:
               
chr3:42995316-42994955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 106
               

               
Conread position:
               
112-465
               

               
Cow position:
               
chr3:63003182-63002826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
83, 129
               

               
Conread position:
               
113-457
               

               
Cow position:
               
chr3:83232872-83232533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
136, 104
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr3:6661165-6661518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 132
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr3:42052784-42052426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
80, 108
               

               
Conread position:
               
122-465
               

               
Cow position:
               
chr3:41211365-41211016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 162
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chr3:2907392-2907052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
116, 39
               

               
Conread position:
               
123-466
               

               
Cow position:
               
chr3:49544834-49544492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
72, 176
               

               
Conread position:
               
124-460
               

               
Cow position:
               
chr3:65582892-65582558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 172
               

               
Conread position:
               
134-418
               

               
Cow position:
               
chr3:52654488-52654204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 105
               

               
Conread position:
               
134-465
               

               
Cow position:
               
chr3:32616609-32616274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 46
               

               
Conread position:
               
139-465
               

               
Cow position:
               
chr3:19890211-19889883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
182-427
               

               
Cow position:
               
chr3:29323972-29324220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
110-463
               

               
Cow position:
               
chr4:15194774-15195128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
113-402
               

               
Cow position:
               
chr4:968482-968177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 189
               

               
Conread position:
               
123-417
               

               
Cow position:
               
chr4:39271205-39270906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
127-465
               

               
Cow position:
               
chr4:356093-356434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
155-411
               

               
Cow position:
               
chr4:61694311-61694056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
168, 69
               

               
Conread position:
               
160-466
               

               
Cow position:
               
chr4:13870230-13870542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 136
               

               
Conread position:
               
181-465
               

               
Cow position:
               
chr4:7330837-7331118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
281-460
               

               
Cow position:
               
chr4:43455055-43455233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr5:47894277-47893920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 6
               

               
Conread position:
               
114-460
               

               
Cow position:
               
chr5:51335983-51335646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
127-465
               

               
Cow position:
               
chr5:73489280-73488938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
68, 119
               

               
Conread position:
               
139-454
               

               
Cow position:
               
chr5:35526101-35526410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 135
               

               
Conread position:
               
139-465
               

               
Cow position:
               
chr5:32154610-32154282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
142-465
               

               
Cow position:
               
chr5:2914740-2915069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 194
               

               
Conread position:
               
203-454
               

               
Cow position:
               
chr5:53005996-53006249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
333-457
               

               
Cow position:
               
chr5:33187263-33187381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
110-465
               

               
Cow position:
               
chr6:44904893-44905252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
83, 296
               

               
Conread position:
               
112-465
               

               
Cow position:
               
chr6:20560705-20560346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 190
               

               
Conread position:
               
113-452
               

               
Cow position:
               
chr6:66542050-66542390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 114
               

               
Conread position:
               
122-461
               

               
Cow position:
               
chr6:15477323-15477677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
123-461
               

               
Cow position:
               
chr6:914048-914391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
72, 103
               

               
Conread position:
               
111-427
               

               
Cow position:
               
chr7:20304992-20304674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
113-312
               

               
Cow position:
               
chr7:33758571-33758774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
90, 178
               

               
Conread position:
               
113-461
               

               
Cow position:
               
chr7:68358468-68358811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 67
               

               
Conread position:
               
119-465
               

               
Cow position:
               
chr7:21853324-21852980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
115, 82
               

               
Conread position:
               
123-384
               

               
Cow position:
               
chr7:39554956-39554688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
134-466
               

               
Cow position:
               
chr7:33072767-33072441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
61, 125
               

               
Conread position:
               
142-391
               

               
Cow position:
               
chr7:24057957-24058215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 162
               

               
Conread position:
               
288-460
               

               
Cow position:
               
chr7:59683861-59684030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 141
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr8:13698500-13698143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
84, 184
               

               
Conread position:
               
120-465
               

               
Cow position:
               
chr8:47361374-47361019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 47
               

               
Conread position:
               
123-427
               

               
Cow position:
               
chr8:19051172-19051481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 174
               

               
Conread position:
               
138-428
               

               
Cow position:
               
chr8:45216505-45216800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chr8:11564316-11564576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
234-457
               

               
Cow position:
               
chr8:47081673-47081896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
250-465
               

               
Cow position:
               
chr8:46147511-46147300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
254-428
               

               
Cow position:
               
chr8:39579581-39579752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
126, 20
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr9:3763343-3763694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
82, 98
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chr9:30487905-30488259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
82, 184
               

               
Conread position:
               
114-466
               

               
Cow position:
               
chr9:52291755-52292117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
120-397
               

               
Cow position:
               
chr9:17757313-17757592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 132
               

               
Conread position:
               
121-464
               

               
Cow position:
               
chr9:7016237-7016578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
123-453
               

               
Cow position:
               
chr9:59426116-59426452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
123-464
               

               
Cow position:
               
chr9:47002537-47002883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 179
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chr9:3167292-3167633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
124-428
               

               
Cow position:
               
chr9:780463-780148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
8, 174
               

               
Conread position:
               
139-465
               

               
Cow position:
               
chr9:9013461-9013791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 161
               

               
Conread position:
               
142-427
               

               
Cow position:
               
chr9:20308789-20308497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 158
               

               
Conread position:
               
142-465
               

               
Cow position:
               
chr9:9705910-9706239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 161
               

               
Conread position:
               
157-360
               

               
Cow position:
               
chr9:28653950-28654165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 134
               

               
Conread position:
               
206-461
               

               
Cow position:
               
chr9:32297014-32296749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 173
               

               
Conread position:
               
113-408
               

               
Cow position:
               
chrX:5652103-5651798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
85, 185
               

               
Conread position:
               
113-422
               

               
Cow position:
               
chrX:40734514-40734204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
113-428
               

               
Cow position:
               
chrX:34838064-34837758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
113-465
               

               
Cow position:
               
chrX:34345475-34345834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 136
               

               
Conread position:
               
120-464
               

               
Cow position:
               
chrX:22513476-22513126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chrX:6884814-6884470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
123-465
               

               
Cow position:
               
chrX:15599218-15599561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 174
               

               
Conread position:
               
124-428
               

               
Cow position:
               
chrX:2604295-2604610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
125-465
               

               
Cow position:
               
chrX:39563682-39563341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
67, 95
               

               
Conread position:
               
126-334
               

               
Cow position:
               
chrX:7030434-7030648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
68, 111
               

               
Conread position:
               
126-351
               

               
Cow position:
               
chrX:21304275-21304041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 162
               

               
Conread position:
               
126-428
               

               
Cow position:
               
chrX:28585230-28585542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 227
               

               
Conread position:
               
127-465
               

               
Cow position:
               
chrX:2482378-2482034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
68, 175
               

               
Conread position:
               
127-465
               

               
Cow position:
               
chrX:27495175-27495514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
68, 166
               

               
Conread position:
               
134-408
               

               
Cow position:
               
chrX:20696841-20696560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 166
               

               
Conread position:
               
142-377
               

               
Cow position:
               
chrX:29779225-29778987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
42, 139
               

               
Conread position:
               
251-455
               

               
Cow position:
               
chrX:15873885-15873685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 42