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Cow genome map

           
Conread name:
           
rche01_k1.y1
        

               
Conread position:
               
90-349
               

               
Cow position:
               
chr1:69179796-69179537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
160-347
               

               
Cow position:
               
chr1:57359674-57359477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
160-355
               

               
Cow position:
               
chr1:52505976-52506168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
168, 28
               

               
Conread position:
               
160-372
               

               
Cow position:
               
chr1:23512449-23512673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
17, 129
               

               
Conread position:
               
160-372
               

               
Cow position:
               
chr1:48770003-48769788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
169, 70
               

               
Conread position:
               
160-372
               

               
Cow position:
               
chr1:95676092-95676303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
170, 51
               

               
Conread position:
               
161-372
               

               
Cow position:
               
chr1:68245124-68245319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
164-348
               

               
Cow position:
               
chr1:69185535-69185710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
168-327
               

               
Cow position:
               
chr1:76081003-76080844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
168-371
               

               
Cow position:
               
chr1:80336048-80336262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
173-369
               

               
Cow position:
               
chr1:36932341-36932144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
149, 16
               

               
Conread position:
               
173-372
               

               
Cow position:
               
chr1:28471028-28470812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
176-327
               

               
Cow position:
               
chr1:97750434-97750582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chr1:67821033-67821188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
176-365
               

               
Cow position:
               
chr1:81613573-81613382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
154, 39
               

               
Conread position:
               
177-329
               

               
Cow position:
               
chr1:70001649-70001801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
177-371
               

               
Cow position:
               
chr1:76436663-76436467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
148, 55
               

               
Conread position:
               
177-372
               

               
Cow position:
               
chr1:36875214-36875016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
177-372
               

               
Cow position:
               
chr1:77880550-77880744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
168, 56
               

               
Conread position:
               
181-327
               

               
Cow position:
               
chr1:49358233-49358085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
181-348
               

               
Cow position:
               
chr1:46100659-46100828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
181-364
               

               
Cow position:
               
chr1:6972714-6972520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
181-369
               

               
Cow position:
               
chr1:39509873-39510069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
182-372
               

               
Cow position:
               
chr1:58037200-58037005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
183-372
               

               
Cow position:
               
chr1:51446068-51445874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
184-327
               

               
Cow position:
               
chr1:86383625-86383769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
185-348
               

               
Cow position:
               
chr1:42822446-42822283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
142, 31
               

               
Conread position:
               
185-367
               

               
Cow position:
               
chr1:65909689-65909504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
140, 76
               

               
Conread position:
               
191-310
               

               
Cow position:
               
chr1:15167765-15167885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
191-372
               

               
Cow position:
               
chr1:16961835-16962024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
191-372
               

               
Cow position:
               
chr1:65639082-65638901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
138, 21
               

               
Conread position:
               
191-372
               

               
Cow position:
               
chr1:97939128-97938949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
133, 43
               

               
Conread position:
               
192-370
               

               
Cow position:
               
chr1:90868275-90868453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 70
               

               
Conread position:
               
192-372
               

               
Cow position:
               
chr1:68672430-68672611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
192-387
               

               
Cow position:
               
chr1:67305068-67305269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
193-326
               

               
Cow position:
               
chr1:57900553-57900687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
194-372
               

               
Cow position:
               
chr1:8347291-8347109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
131, 39
               

               
Conread position:
               
194-372
               

               
Cow position:
               
chr1:77892306-77892125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chr1:98576217-98576015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
195-333
               

               
Cow position:
               
chr1:84787439-84787301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
195-372
               

               
Cow position:
               
chr1:81580346-81580164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
133, 121
               

               
Conread position:
               
196-330
               

               
Cow position:
               
chr1:10822709-10822845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
197-372
               

               
Cow position:
               
chr1:21836098-21835921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
197-372
               

               
Cow position:
               
chr1:77683514-77683338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
127, 54
               

               
Conread position:
               
198-328
               

               
Cow position:
               
chr1:83783762-83783894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
198-347
               

               
Cow position:
               
chr1:80306211-80306358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 122
               

               
Conread position:
               
198-370
               

               
Cow position:
               
chr1:8670938-8670761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
129, 47
               

               
Conread position:
               
198-372
               

               
Cow position:
               
chr1:48730669-48730843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
132, 35
               

               
Conread position:
               
199-355
               

               
Cow position:
               
chr1:99024066-99024226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
200-371
               

               
Cow position:
               
chr1:31256063-31256235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
200-372
               

               
Cow position:
               
chr1:54157458-54157280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
204-369
               

               
Cow position:
               
chr1:19304729-19304561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
205-331
               

               
Cow position:
               
chr1:57331330-57331452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
206-328
               

               
Cow position:
               
chr1:53671594-53671714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
206-334
               

               
Cow position:
               
chr1:45873914-45874040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
206-372
               

               
Cow position:
               
chr1:17317206-17317370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
145, 16
               

               
Conread position:
               
208-365
               

               
Cow position:
               
chr1:98551873-98551713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 25
               

               
Conread position:
               
208-369
               

               
Cow position:
               
chr1:37886655-37886817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 131
               

               
Conread position:
               
209-329
               

               
Cow position:
               
chr1:10716651-10716532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
210-310
               

               
Cow position:
               
chr1:51469696-51469596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-327
               

               
Cow position:
               
chr1:1875543-1875424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
210-328
               

               
Cow position:
               
chr1:23055204-23055083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
210-328
               

               
Cow position:
               
chr1:68400131-68400251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
210-328
               

               
Cow position:
               
chr1:70291942-70291823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
210-329
               

               
Cow position:
               
chr1:85162391-85162512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
210-333
               

               
Cow position:
               
chr1:34318632-34318755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-334
               

               
Cow position:
               
chr1:6963045-6962920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
210-338
               

               
Cow position:
               
chr1:96136620-96136493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
210-347
               

               
Cow position:
               
chr1:43148389-43148532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
210-369
               

               
Cow position:
               
chr1:64019367-64019532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
210-369
               

               
Cow position:
               
chr1:71253402-71253564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
210-370
               

               
Cow position:
               
chr1:50992090-50991921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
210-371
               

               
Cow position:
               
chr1:24777839-24778002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:33996770-33996938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:45670786-45670621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:64329068-64328907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
6, 56
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:67918911-67918743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:68127035-68127204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:69264963-69264796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 133
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:78067916-78068083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
117, 51
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:95153376-95153209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:98512080-98511913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
120, 58
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr1:98708779-98708621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
115, 58
               

               
Conread position:
               
210-389
               

               
Cow position:
               
chr1:8624296-8624480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
211-322
               

               
Cow position:
               
chr1:45553090-45553201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-328
               

               
Cow position:
               
chr1:3882305-3882423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
211-328
               

               
Cow position:
               
chr1:42404287-42404171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
211-328
               

               
Cow position:
               
chr1:53540727-53540610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-328
               

               
Cow position:
               
chr1:92999184-92999067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr1:34771350-34771517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr1:39068802-39068970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr1:51531909-51531739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr1:84010920-84010758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 78
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr1:85549928-85550092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
119, 7
               

               
Conread position:
               
212-328
               

               
Cow position:
               
chr1:55194095-55194210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
213-328
               

               
Cow position:
               
chr1:76657916-76658031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
213-353
               

               
Cow position:
               
chr1:92095517-92095379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
213-372
               

               
Cow position:
               
chr1:9143869-9143708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
213-372
               

               
Cow position:
               
chr1:86579112-86578951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
214-347
               

               
Cow position:
               
chr1:38544105-38544239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
214-372
               

               
Cow position:
               
chr1:5580205-5580047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
214-372
               

               
Cow position:
               
chr1:90975937-90976102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
214-372
               

               
Cow position:
               
chr1:92684544-92684709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
215-371
               

               
Cow position:
               
chr1:79718954-79718797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 53
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr1:186132-186288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
135, 92
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr1:14106479-14106632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr1:99221207-99221365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
135, 46
               

               
Conread position:
               
216-327
               

               
Cow position:
               
chr1:11381887-11381777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
216-365
               

               
Cow position:
               
chr1:77232430-77232585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
216-369
               

               
Cow position:
               
chr1:95072480-95072321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
216-370
               

               
Cow position:
               
chr1:78810023-78809864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
216-372
               

               
Cow position:
               
chr1:63434661-63434820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 36
               

               
Conread position:
               
216-372
               

               
Cow position:
               
chr1:86340319-86340478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
217-322
               

               
Cow position:
               
chr1:29453164-29453059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
217-348
               

               
Cow position:
               
chr1:3417502-3417367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
217-372
               

               
Cow position:
               
chr1:81858752-81858916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
217-372
               

               
Cow position:
               
chr1:82337635-82337790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 28
               

               
Conread position:
               
217-372
               

               
Cow position:
               
chr1:98413917-98413758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
112, 28
               

               
Conread position:
               
217-373
               

               
Cow position:
               
chr1:65881952-65881792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
108, 61
               

               
Conread position:
               
218-348
               

               
Cow position:
               
chr1:52679728-52679598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
218-370
               

               
Cow position:
               
chr1:88360024-88359866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
218-371
               

               
Cow position:
               
chr1:55357150-55357300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
218-372
               

               
Cow position:
               
chr1:28563422-28563580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
218-372
               

               
Cow position:
               
chr1:52995172-52995010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 59
               

               
Conread position:
               
218-372
               

               
Cow position:
               
chr1:68763541-68763698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
37, 129
               

               
Conread position:
               
218-372
               

               
Cow position:
               
chr1:76735335-76735492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
218-372
               

               
Cow position:
               
chr1:101177661-101177501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
73, 77
               

               
Conread position:
               
219-322
               

               
Cow position:
               
chr1:98402714-98402611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
219-328
               

               
Cow position:
               
chr1:52912753-52912861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
219-354
               

               
Cow position:
               
chr1:50843706-50843841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
219-372
               

               
Cow position:
               
chr1:30983352-30983506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
219-372
               

               
Cow position:
               
chr1:72422264-72422422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 85
               

               
Conread position:
               
220-328
               

               
Cow position:
               
chr1:28985422-28985530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
220-355
               

               
Cow position:
               
chr1:17029085-17029220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
122, 109
               

               
Conread position:
               
220-363
               

               
Cow position:
               
chr1:33206735-33206884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
220-363
               

               
Cow position:
               
chr1:73551363-73551515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
220-371
               

               
Cow position:
               
chr1:6381915-6381759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr1:7971556-7971397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr1:22824048-22823891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr1:38419167-38419013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr1:61741824-61741981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr1:98897549-98897708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
220-373
               

               
Cow position:
               
chr1:44507107-44506958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
220-374
               

               
Cow position:
               
chr1:759274-759434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
221-347
               

               
Cow position:
               
chr1:25021932-25022060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
221-348
               

               
Cow position:
               
chr1:100812151-100812279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
221-371
               

               
Cow position:
               
chr1:89741852-89742013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
221-372
               

               
Cow position:
               
chr1:49980854-49980696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
221-372
               

               
Cow position:
               
chr1:53308251-53308403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
221-372
               

               
Cow position:
               
chr1:102648421-102648264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
221-373
               

               
Cow position:
               
chr1:56225925-56225770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
222-328
               

               
Cow position:
               
chr1:67539701-67539596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
222-347
               

               
Cow position:
               
chr1:36018641-36018764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
222-347
               

               
Cow position:
               
chr1:69411555-69411685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
222-348
               

               
Cow position:
               
chr1:76518564-76518434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
222-348
               

               
Cow position:
               
chr1:83606308-83606438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
222-351
               

               
Cow position:
               
chr1:1380139-1380007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
103, 128
               

               
Conread position:
               
222-365
               

               
Cow position:
               
chr1:92603161-92603011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
222-368
               

               
Cow position:
               
chr1:95153013-95152861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
222-369
               

               
Cow position:
               
chr1:78857187-78857340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
222-370
               

               
Cow position:
               
chr1:55428814-55428969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
222-370
               

               
Cow position:
               
chr1:73721503-73721348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
58, 39
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:18936696-18936847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 45
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:38277887-38278042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:38706713-38706868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:43352514-43352668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:49433122-49433278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:52487839-52487994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:53370225-53370071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:53402923-53402777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:54258708-54258553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
103, 73
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:57089539-57089693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 56
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:65318716-65318561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:67529197-67529041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:72068692-72068849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:72813758-72813603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
107, 144
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:74084049-74084202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:76612993-76613149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:77685839-77685985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:77739863-77739708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
102, 44
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:87095072-87095228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:100474376-100474220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr1:101834958-101834805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
223-328
               

               
Cow position:
               
chr1:23372999-23372895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
223-342
               

               
Cow position:
               
chr1:43296578-43296695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
223-348
               

               
Cow position:
               
chr1:81364401-81364272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
223-364
               

               
Cow position:
               
chr1:69445473-69445323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
223-372
               

               
Cow position:
               
chr1:7453050-7452905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
223-372
               

               
Cow position:
               
chr1:20667602-20667756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
107, 40
               

               
Conread position:
               
223-372
               

               
Cow position:
               
chr1:45555506-45555352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
224-334
               

               
Cow position:
               
chr1:25956035-25955926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
224-347
               

               
Cow position:
               
chr1:70416621-70416747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
101, 18
               

               
Conread position:
               
224-348
               

               
Cow position:
               
chr1:79409590-79409463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
224-348
               

               
Cow position:
               
chr1:98556979-98557107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
224-365
               

               
Cow position:
               
chr1:87197959-87197813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
224-366
               

               
Cow position:
               
chr1:101280598-101280742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
224-369
               

               
Cow position:
               
chr1:24132924-24133071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
98, 12
               

               
Conread position:
               
224-370
               

               
Cow position:
               
chr1:8287491-8287642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
100, 47
               

               
Conread position:
               
224-370
               

               
Cow position:
               
chr1:102768317-102768168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
108, 122
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr1:4032772-4032618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr1:19515477-19515633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr1:22730872-22730720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr1:53623092-53622944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr1:54156595-54156748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr1:91811919-91811768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr1:93554976-93554822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr1:96081618-96081466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
225-348
               

               
Cow position:
               
chr1:87149676-87149803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
225-364
               

               
Cow position:
               
chr1:88913458-88913314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 84
               

               
Conread position:
               
225-372
               

               
Cow position:
               
chr1:72141710-72141563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
102, 8
               

               
Conread position:
               
225-372
               

               
Cow position:
               
chr1:96450974-96450837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
226-328
               

               
Cow position:
               
chr1:6941605-6941504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
226-328
               

               
Cow position:
               
chr1:100852847-100852745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
226-329
               

               
Cow position:
               
chr1:89341842-89341945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
226-345
               

               
Cow position:
               
chr1:46939745-46939870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
226-348
               

               
Cow position:
               
chr1:91810884-91810762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
226-364
               

               
Cow position:
               
chr1:101525787-101525931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
226-368
               

               
Cow position:
               
chr1:43388914-43389058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
105, 119
               

               
Conread position:
               
226-369
               

               
Cow position:
               
chr1:19962188-19962042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
226-370
               

               
Cow position:
               
chr1:2462515-2462371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 94
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chr1:3914781-3914932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chr1:43311633-43311786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chr1:50930841-50930989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chr1:78697635-78697785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chr1:84768741-84768893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
227-372
               

               
Cow position:
               
chr1:34159974-34159821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
227-372
               

               
Cow position:
               
chr1:56711466-56711613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
228-323
               

               
Cow position:
               
chr1:74011048-74010953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
228-370
               

               
Cow position:
               
chr1:15334027-15333883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:11729311-11729161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:22035747-22035598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 145
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:32001183-32001327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
23, 109
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:59519050-59518908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:66752493-66752643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:71915984-71916133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:72105542-72105398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:74928020-74927870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:81481246-81481396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
102, 121
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:101267868-101268015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
228-373
               

               
Cow position:
               
chr1:51860425-51860576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
229-328
               

               
Cow position:
               
chr1:7023256-7023157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
229-353
               

               
Cow position:
               
chr1:51371683-51371807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
95, 112
               

               
Conread position:
               
229-367
               

               
Cow position:
               
chr1:80422407-80422267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
230-372
               

               
Cow position:
               
chr1:242691-242543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
230-372
               

               
Cow position:
               
chr1:20864189-20864043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
230-372
               

               
Cow position:
               
chr1:36998319-36998172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 131
               

               
Conread position:
               
233-334
               

               
Cow position:
               
chr1:100552106-100552005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
233-365
               

               
Cow position:
               
chr1:85339515-85339386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
89, 108
               

               
Conread position:
               
233-372
               

               
Cow position:
               
chr1:54732359-54732499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
233-372
               

               
Cow position:
               
chr1:56477723-56477578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
233-372
               

               
Cow position:
               
chr1:69694861-69695006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
233-372
               

               
Cow position:
               
chr1:72011682-72011827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
233-372
               

               
Cow position:
               
chr1:101507490-101507346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 35
               

               
Conread position:
               
233-373
               

               
Cow position:
               
chr1:46765007-46764862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
234-328
               

               
Cow position:
               
chr1:98396755-98396849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
234-348
               

               
Cow position:
               
chr1:19997845-19997960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
234-357
               

               
Cow position:
               
chr1:32014326-32014199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
234-371
               

               
Cow position:
               
chr1:75383100-75382968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr1:3923670-3923814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr1:4291294-4291152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr1:6854178-6854318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr1:42360418-42360272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr1:43311901-43312045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr1:69481820-69481962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr1:97696874-97696733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr1:99642240-99642381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
234-389
               

               
Cow position:
               
chr1:95835668-95835828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 157
               

               
Conread position:
               
234-405
               

               
Cow position:
               
chr1:91066022-91066199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 75
               

               
Conread position:
               
235-368
               

               
Cow position:
               
chr1:22461109-22461248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
235-369
               

               
Cow position:
               
chr1:45315507-45315647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
235-370
               

               
Cow position:
               
chr1:42541726-42541586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr1:10778692-10778549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr1:42868811-42868950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr1:45478734-45478873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr1:73936015-73936159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr1:94261664-94261523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr1:95974528-95974386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr1:99609497-99609357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr1:101632207-101632351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr1:102349623-102349760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
235-375
               

               
Cow position:
               
chr1:61011310-61011164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
236-348
               

               
Cow position:
               
chr1:19855280-19855169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-366
               

               
Cow position:
               
chr1:42178873-42178737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
236-372
               

               
Cow position:
               
chr1:28177132-28176994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
236-372
               

               
Cow position:
               
chr1:39417987-39418125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
236-372
               

               
Cow position:
               
chr1:45223709-45223567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
236-372
               

               
Cow position:
               
chr1:68676490-68676347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
237-372
               

               
Cow position:
               
chr1:14206027-14206163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
95, 8
               

               
Conread position:
               
237-372
               

               
Cow position:
               
chr1:74081855-74081995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
238-372
               

               
Cow position:
               
chr1:30417922-30418055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
239-372
               

               
Cow position:
               
chr1:41252285-41252421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
239-372
               

               
Cow position:
               
chr1:82880769-82880632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
240-348
               

               
Cow position:
               
chr1:81638672-81638560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
240-372
               

               
Cow position:
               
chr1:8349200-8349332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
240-372
               

               
Cow position:
               
chr1:98594689-98594559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
242-372
               

               
Cow position:
               
chr1:8737-8601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
245-372
               

               
Cow position:
               
chr1:85712558-85712426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
249-372
               

               
Cow position:
               
chr1:37309404-37309533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
249-372
               

               
Cow position:
               
chr1:95215075-95215204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
250-372
               

               
Cow position:
               
chr1:61542805-61542932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
251-372
               

               
Cow position:
               
chr1:97144353-97144478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
254-369
               

               
Cow position:
               
chr1:68845379-68845495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
254-372
               

               
Cow position:
               
chr1:74955911-74956031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
254-372
               

               
Cow position:
               
chr1:88111981-88111861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
260-371
               

               
Cow position:
               
chr1:77265537-77265424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
85-329
               

               
Cow position:
               
chr10:6252236-6252491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
90, 67
               

               
Conread position:
               
90-348
               

               
Cow position:
               
chr10:22119882-22120140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
160-328
               

               
Cow position:
               
chr10:28776518-28776357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
160-347
               

               
Cow position:
               
chr10:55119710-55119902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
160-348
               

               
Cow position:
               
chr10:31265889-31266064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
160-351
               

               
Cow position:
               
chr10:57457795-57457610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
161, 29
               

               
Conread position:
               
160-369
               

               
Cow position:
               
chr10:35778724-35778941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 16
               

               
Conread position:
               
160-370
               

               
Cow position:
               
chr10:61839763-61839555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 124
               

               
Conread position:
               
160-372
               

               
Cow position:
               
chr10:24732469-24732264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
190, 29
               

               
Conread position:
               
171-348
               

               
Cow position:
               
chr10:62277164-62277347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 65
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr10:58259360-58259518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 99
               

               
Conread position:
               
172-330
               

               
Cow position:
               
chr10:37822449-37822605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
172-348
               

               
Cow position:
               
chr10:35795497-35795324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
158, 15
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chr10:77530-77379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
67, 77
               

               
Conread position:
               
177-321
               

               
Cow position:
               
chr10:22566999-22567144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
178-347
               

               
Cow position:
               
chr10:890119-889946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
62, 58
               

               
Conread position:
               
179-372
               

               
Cow position:
               
chr10:29526740-29526939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 147
               

               
Conread position:
               
180-372
               

               
Cow position:
               
chr10:33311336-33311520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
182-323
               

               
Cow position:
               
chr10:15426929-15427069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
184-372
               

               
Cow position:
               
chr10:51222983-51223173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
145, 27
               

               
Conread position:
               
186-372
               

               
Cow position:
               
chr10:26209098-26209290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 181
               

               
Conread position:
               
191-371
               

               
Cow position:
               
chr10:15225108-15224922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
191-372
               

               
Cow position:
               
chr10:24375688-24375506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
192-346
               

               
Cow position:
               
chr10:54548655-54548497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 9
               

               
Conread position:
               
192-369
               

               
Cow position:
               
chr10:49253505-49253326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
192-372
               

               
Cow position:
               
chr10:67260387-67260570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 88
               

               
Conread position:
               
193-372
               

               
Cow position:
               
chr10:31373949-31374131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
113, 75
               

               
Conread position:
               
194-341
               

               
Cow position:
               
chr10:20505904-20505759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
194-372
               

               
Cow position:
               
chr10:47725084-47724903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
196-369
               

               
Cow position:
               
chr10:51696879-51696701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
198-328
               

               
Cow position:
               
chr10:36947057-36947187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
79, 53
               

               
Conread position:
               
198-328
               

               
Cow position:
               
chr10:46941343-46941472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
200-371
               

               
Cow position:
               
chr10:17925939-17926121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
201-419
               

               
Cow position:
               
chr10:59151731-59151952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
202-372
               

               
Cow position:
               
chr10:33369915-33369744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
203-334
               

               
Cow position:
               
chr10:34687211-34687083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
204-326
               

               
Cow position:
               
chr10:49947751-49947872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
205-371
               

               
Cow position:
               
chr10:53247877-53248043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
114, 12
               

               
Conread position:
               
206-372
               

               
Cow position:
               
chr10:17553306-17553139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 6
               

               
Conread position:
               
206-372
               

               
Cow position:
               
chr10:17765841-17766016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
206-372
               

               
Cow position:
               
chr10:31791132-31791302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
112, 38
               

               
Conread position:
               
207-364
               

               
Cow position:
               
chr10:59163980-59164133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
123, 70
               

               
Conread position:
               
207-372
               

               
Cow position:
               
chr10:34430100-34430269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
117, 19
               

               
Conread position:
               
207-372
               

               
Cow position:
               
chr10:59010008-59010179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
208-372
               

               
Cow position:
               
chr10:50015872-50016041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
209-377
               

               
Cow position:
               
chr10:33371511-33371336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
210-323
               

               
Cow position:
               
chr10:22810933-22811046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-328
               

               
Cow position:
               
chr10:668990-668872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
81, 110
               

               
Conread position:
               
210-328
               

               
Cow position:
               
chr10:4151663-4151545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-328
               

               
Cow position:
               
chr10:32986043-32986161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
210-328
               

               
Cow position:
               
chr10:37442668-37442549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
210-328
               

               
Cow position:
               
chr10:53076238-53076120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-333
               

               
Cow position:
               
chr10:50201127-50201005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
210-349
               

               
Cow position:
               
chr10:2260268-2260128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
210-370
               

               
Cow position:
               
chr10:17388962-17388799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
210-371
               

               
Cow position:
               
chr10:20736807-20736645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:2538214-2538052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
140, 51
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:15293391-15293222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:20132404-20132572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:22472449-22472281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:24902860-24903028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 58
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:29919712-29919882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:32573854-32573684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
114, 41
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:42230914-42230749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
119, 17
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:50042727-50042564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr10:56180687-56180520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
120, 23
               

               
Conread position:
               
211-328
               

               
Cow position:
               
chr10:9578833-9578952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
211-328
               

               
Cow position:
               
chr10:37785243-37785359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
211-348
               

               
Cow position:
               
chr10:2697053-2696920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
211-365
               

               
Cow position:
               
chr10:39228271-39228111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
211-369
               

               
Cow position:
               
chr10:29252286-29252127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 15
               

               
Conread position:
               
211-370
               

               
Cow position:
               
chr10:13311858-13311695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
10, 154
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr10:4198106-4197934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr10:15115738-15115570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
211-372
               

               
Cow position:
               
chr10:60961058-60960891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
212-355
               

               
Cow position:
               
chr10:48742404-48742550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
212-372
               

               
Cow position:
               
chr10:17176155-17175992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
212-372
               

               
Cow position:
               
chr10:22049377-22049217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
136, 117
               

               
Conread position:
               
213-328
               

               
Cow position:
               
chr10:19071978-19071863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
213-328
               

               
Cow position:
               
chr10:49455974-49456086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
213-371
               

               
Cow position:
               
chr10:28429383-28429546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
213-372
               

               
Cow position:
               
chr10:59839169-59839328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 23
               

               
Conread position:
               
213-372
               

               
Cow position:
               
chr10:62286681-62286513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
214-348
               

               
Cow position:
               
chr10:52061939-52061803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
116, 64
               

               
Conread position:
               
214-371
               

               
Cow position:
               
chr10:11009530-11009367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
214-371
               

               
Cow position:
               
chr10:13316059-13315896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
214-371
               

               
Cow position:
               
chr10:47690508-47690345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
214-372
               

               
Cow position:
               
chr10:25699770-25699606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
214-372
               

               
Cow position:
               
chr10:46492873-46493038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr10:15868371-15868208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr10:41626712-41626552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 74
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr10:42313023-42312859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr10:67581404-67581241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
216-349
               

               
Cow position:
               
chr10:53971990-53972122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
216-365
               

               
Cow position:
               
chr10:23506373-23506524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
106, 86
               

               
Conread position:
               
216-372
               

               
Cow position:
               
chr10:704878-705039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
216-372
               

               
Cow position:
               
chr10:13586821-13586660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 34
               

               
Conread position:
               
216-372
               

               
Cow position:
               
chr10:24022165-24022325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 49
               

               
Conread position:
               
216-372
               

               
Cow position:
               
chr10:24830961-24831127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
216-372
               

               
Cow position:
               
chr10:59663854-59664017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 48
               

               
Conread position:
               
217-372
               

               
Cow position:
               
chr10:12392494-12392652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
104, 46
               

               
Conread position:
               
217-372
               

               
Cow position:
               
chr10:24871283-24871121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
218-368
               

               
Cow position:
               
chr10:6516812-6516658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
218-371
               

               
Cow position:
               
chr10:4184312-4184153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
218-372
               

               
Cow position:
               
chr10:23127871-23128030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
106, 8
               

               
Conread position:
               
218-372
               

               
Cow position:
               
chr10:57059165-57059324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
219-372
               

               
Cow position:
               
chr10:13927849-13927691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
108, 147
               

               
Conread position:
               
219-372
               

               
Cow position:
               
chr10:56475585-56475422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
219-380
               

               
Cow position:
               
chr10:62454254-62454422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
220-358
               

               
Cow position:
               
chr10:59214367-59214516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
220-370
               

               
Cow position:
               
chr10:43272930-43273086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr10:17691127-17691272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr10:18042294-18042136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
220-372
               

               
Cow position:
               
chr10:55600043-55600200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
221-324
               

               
Cow position:
               
chr10:32799146-32799248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
221-372
               

               
Cow position:
               
chr10:16986445-16986288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
221-372
               

               
Cow position:
               
chr10:47651410-47651255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 12
               

               
Conread position:
               
222-328
               

               
Cow position:
               
chr10:7309340-7309446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
222-328
               

               
Cow position:
               
chr10:32503540-32503433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
222-328
               

               
Cow position:
               
chr10:36856018-36856125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
222-344
               

               
Cow position:
               
chr10:9797799-9797920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
222-347
               

               
Cow position:
               
chr10:38195865-38195989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
222-348
               

               
Cow position:
               
chr10:13158226-13158095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
222-348
               

               
Cow position:
               
chr10:39140431-39140302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
222-358
               

               
Cow position:
               
chr10:30787516-30787653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 45
               

               
Conread position:
               
222-365
               

               
Cow position:
               
chr10:16645077-16645223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
222-368
               

               
Cow position:
               
chr10:25466179-25466026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
222-369
               

               
Cow position:
               
chr10:16598800-16598648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
103, 28
               

               
Conread position:
               
222-371
               

               
Cow position:
               
chr10:16830275-16830429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
222-371
               

               
Cow position:
               
chr10:39258382-39258531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:10027683-10027531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:19895505-19895355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
128, 44
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:29102234-29102387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:33084327-33084480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:36002310-36002156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:37014746-37014590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:47182457-47182612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 51
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:47543188-47543039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:48316835-48316990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:52296605-52296454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:52881506-52881662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
222-372
               

               
Cow position:
               
chr10:55122919-55122763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
222-375
               

               
Cow position:
               
chr10:23379246-23379087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
223-328
               

               
Cow position:
               
chr10:22972894-22972999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
223-330
               

               
Cow position:
               
chr10:15602070-15602177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
224-328
               

               
Cow position:
               
chr10:61171369-61171264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
224-368
               

               
Cow position:
               
chr10:30929775-30929927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 21
               

               
Conread position:
               
224-369
               

               
Cow position:
               
chr10:37295562-37295713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr10:15309292-15309447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr10:30261497-30261646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
126, 21
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr10:48377288-48377441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 90
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr10:54699596-54699749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 30
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr10:63884048-63883898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
225-349
               

               
Cow position:
               
chr10:52309167-52309042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
225-371
               

               
Cow position:
               
chr10:19098945-19098798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
225-373
               

               
Cow position:
               
chr10:5543141-5543293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 89
               

               
Conread position:
               
226-348
               

               
Cow position:
               
chr10:58149061-58149187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chr10:50533760-50533908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chr10:54848886-54848738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
227-372
               

               
Cow position:
               
chr10:10751883-10752032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
100, 121
               

               
Conread position:
               
227-372
               

               
Cow position:
               
chr10:21082488-21082337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
228-347
               

               
Cow position:
               
chr10:58638119-58637999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
228-358
               

               
Cow position:
               
chr10:50050011-50049880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
228-364
               

               
Cow position:
               
chr10:52278831-52278689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:1976208-1976357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:10153114-10152966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:17567995-17568145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:22980871-22981022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:23912405-23912547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:35862122-35862271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 38
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:41116011-41115861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:41132371-41132221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:42746021-42745874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:47159321-47159171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:50182945-50183087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:51727317-51727463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:63628296-63628145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr10:69934674-69934816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
229-372
               

               
Cow position:
               
chr10:48462238-48462383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
95, 116
               

               
Conread position:
               
231-366
               

               
Cow position:
               
chr10:20485456-20485597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
231-372
               

               
Cow position:
               
chr10:35605153-35605006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
233-328
               

               
Cow position:
               
chr10:37708916-37709010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
233-353
               

               
Cow position:
               
chr10:15871771-15871891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
233-371
               

               
Cow position:
               
chr10:24132722-24132862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
233-371
               

               
Cow position:
               
chr10:51289352-51289209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
233-372
               

               
Cow position:
               
chr10:4109688-4109545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
234-348
               

               
Cow position:
               
chr10:17448097-17448216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr10:10137965-10137821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr10:19372236-19372380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr10:32080372-32080231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr10:58736865-58737000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr10:64042183-64042041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr10:64285695-64285838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
234-386
               

               
Cow position:
               
chr10:28670718-28670875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
235-368
               

               
Cow position:
               
chr10:23576645-23576507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 62
               

               
Conread position:
               
235-370
               

               
Cow position:
               
chr10:19549389-19549529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
235-371
               

               
Cow position:
               
chr10:1488932-1488789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
235-372
               

               
Cow position:
               
chr10:4164369-4164226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               
235-372UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr10:39387552-39387412 (view  custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 26
               
235-372UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:45658244-45658102 (view  custom track)

               
               
               
Alignm length:
143

               
               
               
Alignm identity:
111

               
               
               
Alignm E-value:
6e-24

               
               
               
Alignm gaps (pig, cow):
84, 0
237-372UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:40420749-40420888 (view  custom track)

               
               
               
Alignm length:
141

               
               
               
Alignm identity:
108

               
               
               
Alignm E-value:
1e-21

               
               
               
Alignm gaps (pig, cow):
7, 73

               
               
               Conread position:237-372
               
               
               Cow position:chr10:58285710-58285843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr10:65345376-65345518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr10:2849445-2849306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 71

               
               
               Conread position:238-372
               
               
               Cow position:chr10:6664130-6663990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:238-373
               
               
               Cow position:chr10:34660146-34660287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:239-372
               
               
               Cow position:chr10:4311268-4311129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:239-372
               
               
               Cow position:chr10:15425145-15425010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr10:49168940-49169079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr10:65133037-65132901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 68

               
               
               Conread position:242-372
               
               
               Cow position:chr10:48898758-48898622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:242-393
               
               
               Cow position:chr10:50498432-50498586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 152

               
               
               Conread position:243-372
               
               
               Cow position:chr10:68829192-68829328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:246-372
               
               
               Cow position:chr10:29349702-29349568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:246-372
               
               
               Cow position:chr10:53357984-53357857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):96, 56

               
               
               Conread position:248-371
               
               
               Cow position:chr10:1749671-1749546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:250-372
               
               
               Cow position:chr10:23936561-23936437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:253-371
               
               
               Cow position:chr10:34700712-34700588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:160-331
               
               
               Cow position:chr11:34623345-34623180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:160-371
               
               
               Cow position:chr11:23137867-23138090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:160-372
               
               
               Cow position:chr11:61958563-61958781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:160-372
               
               
               Cow position:chr11:79018886-79019096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):167, 16

               
               
               Conread position:165-365
               
               
               Cow position:chr11:39499536-39499326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:168-328
               
               
               Cow position:chr11:37982404-37982565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:168-366
               
               
               Cow position:chr11:5789731-5789931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):154, 21

               
               
               Conread position:168-372
               
               
               Cow position:chr11:64867846-64868058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:176-328
               
               
               Cow position:chr11:28644252-28644100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 92

               
               
               Conread position:176-372
               
               
               Cow position:chr11:34693017-34692816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:177-355
               
               
               Cow position:chr11:30804970-30805151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:182-306
               
               
               Cow position:chr11:36128563-36128439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:182-331
               
               
               Cow position:chr11:56895817-56895965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:183-372
               
               
               Cow position:chr11:66518645-66518454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:184-372
               
               
               Cow position:chr11:17831069-17831258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):146, 22

               
               
               Conread position:185-365
               
               
               Cow position:chr11:69119444-69119263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):142, 49

               
               
               Conread position:185-372
               
               
               Cow position:chr11:30888128-30888320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):113, 48

               
               
               Conread position:190-356
               
               
               Cow position:chr11:4436901-4436733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 153

               
               
               Conread position:191-372
               
               
               Cow position:chr11:83230251-83230437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:192-324
               
               
               Cow position:chr11:45437426-45437295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:192-363
               
               
               Cow position:chr11:83579026-83579204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:192-369
               
               
               Cow position:chr11:62609755-62609570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:194-370
               
               
               Cow position:chr11:70826095-70825913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:194-371
               
               
               Cow position:chr11:58938599-58938781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:195-372
               
               
               Cow position:chr11:22747184-22747365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:195-372
               
               
               Cow position:chr11:33311123-33310936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:195-372
               
               
               Cow position:chr11:63919910-63920091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 5

               
               
               Conread position:196-322
               
               
               Cow position:chr11:17574205-17574331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-326
               
               
               Cow position:chr11:5200438-5200564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:198-326
               
               
               Cow position:chr11:75246488-75246363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:198-372
               
               
               Cow position:chr11:56290654-56290474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:199-368
               
               
               Cow position:chr11:34032057-34032235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:200-372
               
               
               Cow position:chr11:56518171-56518343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:200-372
               
               
               Cow position:chr11:84890575-84890754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:201-348
               
               
               Cow position:chr11:35276408-35276266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:203-326
               
               
               Cow position:chr11:49486916-49486793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:203-372
               
               
               Cow position:chr11:17278537-17278709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:204-372
               
               
               Cow position:chr11:69307650-69307476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:205-328
               
               
               Cow position:chr11:61178493-61178370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:206-414
               
               
               Cow position:chr11:10388489-10388684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:207-342
               
               
               Cow position:chr11:30320937-30320804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:208-360
               
               
               Cow position:chr11:25604079-25603924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:208-371
               
               
               Cow position:chr11:18587464-18587632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:208-371
               
               
               Cow position:chr11:39250104-39249936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:208-372
               
               
               Cow position:chr11:40478719-40478890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:209-329
               
               
               Cow position:chr11:23278833-23278953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-309
               
               
               Cow position:chr11:63640742-63640841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-310
               
               
               Cow position:chr11:70475495-70475594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr11:35860712-35860595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:210-328
               
               
               Cow position:chr11:69076042-69075923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:210-334
               
               
               Cow position:chr11:6092513-6092389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:210-348
               
               
               Cow position:chr11:84775204-84775063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:210-365
               
               
               Cow position:chr11:19606709-19606547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:210-369
               
               
               Cow position:chr11:16906920-16907083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-369
               
               
               Cow position:chr11:41293685-41293852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:210-370
               
               
               Cow position:chr11:63917346-63917512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):120, 81

               
               
               Conread position:210-371
               
               
               Cow position:chr11:58173755-58173589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:210-372
               
               
               Cow position:chr11:3283154-3282992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 133

               
               
               Conread position:210-372
               
               
               Cow position:chr11:4652842-4653010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr11:5249400-5249564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 16

               
               
               Conread position:210-372
               
               
               Cow position:chr11:6202573-6202405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:210-372
               
               
               Cow position:chr11:48650103-48649935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr11:50073066-50072900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:210-372
               
               
               Cow position:chr11:61454388-61454551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:210-372
               
               
               Cow position:chr11:70277981-70278149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr11:71501000-71501169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:210-372
               
               
               Cow position:chr11:82730867-82731035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr11:83033109-83033273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):112, 68

               
               
               Conread position:211-328
               
               
               Cow position:chr11:434745-434861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:211-360
               
               
               Cow position:chr11:71443117-71443256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr11:6633838-6633673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:211-372
               
               
               Cow position:chr11:36238908-36238743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:211-372
               
               
               Cow position:chr11:40573205-40573369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:211-372
               
               
               Cow position:chr11:62754187-62754356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr11:71345193-71345361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr11:77128790-77128623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:211-373
               
               
               Cow position:chr11:53717676-53717845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:212-327
               
               
               Cow position:chr11:31326133-31326020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:212-328
               
               
               Cow position:chr11:42067182-42067066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-348
               
               
               Cow position:chr11:41983041-41983178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:212-363
               
               
               Cow position:chr11:73512317-73512471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:212-372
               
               
               Cow position:chr11:63909538-63909701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr11:15373967-15373801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:214-367
               
               
               Cow position:chr11:34963196-34963038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:214-371
               
               
               Cow position:chr11:72375549-72375719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr11:81762993-81762825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:214-372
               
               
               Cow position:chr11:84498826-84498987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:215-348
               
               
               Cow position:chr11:47784898-47784763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:215-372
               
               
               Cow position:chr11:2084269-2084106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr11:34144799-34144951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 94

               
               
               Conread position:215-372
               
               
               Cow position:chr11:44017100-44016937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:215-388
               
               
               Cow position:chr11:7924468-7924643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):133, 96

               
               
               Conread position:216-328
               
               
               Cow position:chr11:79466339-79466224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:216-347
               
               
               Cow position:chr11:47110373-47110242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-363
               
               
               Cow position:chr11:48272325-48272172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:216-368
               
               
               Cow position:chr11:67312905-67312747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:216-371
               
               
               Cow position:chr11:48474828-48474667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr11:18608120-18608275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:216-372
               
               
               Cow position:chr11:42043872-42044029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):126, 52

               
               
               Conread position:216-372
               
               
               Cow position:chr11:71111016-71110854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:216-373
               
               
               Cow position:chr11:47837444-47837282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:217-328
               
               
               Cow position:chr11:30955124-30955013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-348
               
               
               Cow position:chr11:19578067-19577930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:217-372
               
               
               Cow position:chr11:4207434-4207274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:217-372
               
               
               Cow position:chr11:33753788-33753942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 57

               
               
               Conread position:217-372
               
               
               Cow position:chr11:35351917-35352076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 125

               
               
               Conread position:218-328
               
               
               Cow position:chr11:16796346-16796237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:218-348
               
               
               Cow position:chr11:74720848-74720713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr11:29786376-29786536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:219-328
               
               
               Cow position:chr11:74152633-74152742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr11:1380797-1380638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr11:18086226-18086377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:220-340
               
               
               Cow position:chr11:71455940-71455821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:220-348
               
               
               Cow position:chr11:17517519-17517387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr11:13592856-13592698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr11:30272819-30272968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:220-372
               
               
               Cow position:chr11:31885844-31885679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr11:38236370-38236214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:220-372
               
               
               Cow position:chr11:63847965-63847809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):110, 35

               
               
               Conread position:220-372
               
               
               Cow position:chr11:83066607-83066460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:221-328
               
               
               Cow position:chr11:49396406-49396513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:221-370
               
               
               Cow position:chr11:54334448-54334293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:221-371
               
               
               Cow position:chr11:70978618-70978770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:221-372
               
               
               Cow position:chr11:82289698-82289545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:222-331
               
               
               Cow position:chr11:78780738-78780849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:222-339
               
               
               Cow position:chr11:36300464-36300580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:222-348
               
               
               Cow position:chr11:47585944-47586070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 92

               
               
               Conread position:222-366
               
               
               Cow position:chr11:18508912-18509062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-368
               
               
               Cow position:chr11:69417520-69417370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr11:8670134-8669976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr11:17721684-17721837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:222-370
               
               
               Cow position:chr11:46747742-46747896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr11:19591876-19592029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:222-371
               
               
               Cow position:chr11:26143977-26144132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr11:46427287-46427444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:222-371
               
               
               Cow position:chr11:63435639-63435485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr11:8544899-8545051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):41, 49

               
               
               Conread position:222-372
               
               
               Cow position:chr11:15772596-15772749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:222-372
               
               
               Cow position:chr11:30209704-30209857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr11:34136359-34136206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr11:35109420-35109575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 58

               
               
               Conread position:222-372
               
               
               Cow position:chr11:36920459-36920615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:222-372
               
               
               Cow position:chr11:37804435-37804591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:222-372
               
               
               Cow position:chr11:46999097-46998943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr11:62889775-62889931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr11:65826632-65826788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr11:84385520-84385674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:222-373
               
               
               Cow position:chr11:35926791-35926943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):126, 46

               
               
               Conread position:223-330
               
               
               Cow position:chr11:46452253-46452146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:223-359
               
               
               Cow position:chr11:60470081-60470216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:223-367
               
               
               Cow position:chr11:62168214-62168363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:223-372
               
               
               Cow position:chr11:53510385-53510537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-328
               
               
               Cow position:chr11:60720339-60720443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr11:6233761-6233917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr11:32693368-32693515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):129, 44

               
               
               Conread position:224-372
               
               
               Cow position:chr11:36112535-36112386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):126, 26

               
               
               Conread position:224-372
               
               
               Cow position:chr11:40459225-40459070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr11:67804859-67804712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):103, 55

               
               
               Conread position:225-328
               
               
               Cow position:chr11:59916261-59916159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:225-368
               
               
               Cow position:chr11:83926158-83926016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 119

               
               
               Conread position:225-372
               
               
               Cow position:chr11:62778555-62778407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):105, 9

               
               
               Conread position:225-372
               
               
               Cow position:chr11:70756594-70756445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:226-347
               
               
               Cow position:chr11:19549596-19549474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:226-360
               
               
               Cow position:chr11:78820266-78820126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:226-361
               
               
               Cow position:chr11:35536701-35536561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 91

               
               
               Conread position:226-365
               
               
               Cow position:chr11:48296145-48296003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:226-371
               
               
               Cow position:chr11:30638835-30638986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr11:7590303-7590155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr11:13043031-13043183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr11:13500131-13499980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr11:27913398-27913247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):98, 6

               
               
               Conread position:226-372
               
               
               Cow position:chr11:43360670-43360814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):93, 25

               
               
               Conread position:226-372
               
               
               Cow position:chr11:52690407-52690557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:226-372
               
               
               Cow position:chr11:62742531-62742680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 121

               
               
               Conread position:227-327
               
               
               Cow position:chr11:2284757-2284657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr11:8988118-8988267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):102, 36

               
               
               Conread position:227-372
               
               
               Cow position:chr11:39854904-39855051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr11:80530474-80530329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 84

               
               
               Conread position:228-348
               
               
               Cow position:chr11:15682867-15682991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-348
               
               
               Cow position:chr11:31228075-31227951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:228-366
               
               
               Cow position:chr11:64409083-64408945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):122, 77

               
               
               Conread position:228-369
               
               
               Cow position:chr11:64105110-64104965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:228-371
               
               
               Cow position:chr11:11125775-11125627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:228-371
               
               
               Cow position:chr11:33348077-33348222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:228-372
               
               
               Cow position:chr11:19247087-19247236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr11:28078606-28078466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):118, 78

               
               
               Conread position:228-372
               
               
               Cow position:chr11:30925267-30925119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 50

               
               
               Conread position:228-372
               
               
               Cow position:chr11:34467679-34467534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 117

               
               
               Conread position:228-372
               
               
               Cow position:chr11:35669840-35669989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):99, 58

               
               
               Conread position:228-372
               
               
               Cow position:chr11:39462736-39462586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr11:59873040-59872893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:229-368
               
               
               Cow position:chr11:69415487-69415630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr11:41313547-41313694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:229-372
               
               
               Cow position:chr11:47004457-47004311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:229-372
               
               
               Cow position:chr11:51729398-51729249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr11:9270618-9270762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:233-355
               
               
               Cow position:chr11:80586382-80586257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:233-370
               
               
               Cow position:chr11:77013888-77013749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:233-372
               
               
               Cow position:chr11:27565438-27565296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:233-372
               
               
               Cow position:chr11:30211012-30210872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:234-371
               
               
               Cow position:chr11:21844032-21844168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 52

               
               
               Conread position:234-372
               
               
               Cow position:chr11:20602333-20602188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:234-372
               
               
               Cow position:chr11:53778723-53778579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr11:63482324-63482463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:234-372
               
               
               Cow position:chr11:63485044-63484909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-348
               
               
               Cow position:chr11:9699003-9698891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:235-369
               
               
               Cow position:chr11:62663129-62663266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr11:17227539-17227679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 111

               
               
               Conread position:235-372
               
               
               Cow position:chr11:29946807-29946951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr11:33345551-33345408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr11:41985940-41986083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr11:42083573-42083435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):115, 10

               
               
               Conread position:235-372
               
               
               Cow position:chr11:49153054-49152912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr11:51195977-51196112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:235-372
               
               
               Cow position:chr11:53147426-53147570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr11:77705856-77705721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):118, 57

               
               
               Conread position:236-372
               
               
               Cow position:chr11:73353956-73354097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:236-372
               
               
               Cow position:chr11:81931012-81931149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):97, 109

               
               
               Conread position:236-375
               
               
               Cow position:chr11:71492757-71492900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:237-328
               
               
               Cow position:chr11:81728545-81728636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:80
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr11:45631662-45631797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-372
               
               
               Cow position:chr11:3234177-3234038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:240-371
               
               
               Cow position:chr11:71009225-71009096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:240-372
               
               
               Cow position:chr11:1362367-1362505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:241-370
               
               
               Cow position:chr11:82940525-82940653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:243-368
               
               
               Cow position:chr11:34113363-34113231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:243-372
               
               
               Cow position:chr11:58400347-58400215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:245-328
               
               
               Cow position:chr11:13404937-13405020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-348
               
               
               Cow position:chr11:68975236-68975133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr11:377546-377679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr11:84977262-84977396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:253-372
               
               
               Cow position:chr11:48512251-48512127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:256-372
               
               
               Cow position:chr11:34106586-34106707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 8

               
               
               Conread position:160-328
               
               
               Cow position:chr12:15790212-15790050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr12:4797455-4797242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):167, 10

               
               
               Conread position:160-372
               
               
               Cow position:chr12:17774958-17774736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):34, 111

               
               
               Conread position:161-304
               
               
               Cow position:chr12:34459825-34459676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:161-351
               
               
               Cow position:chr12:39452340-39452524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):183, 33

               
               
               Conread position:162-372
               
               
               Cow position:chr12:5801198-5800983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:164-347
               
               
               Cow position:chr12:24568584-24568760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:164-372
               
               
               Cow position:chr12:3879823-3880038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:172-365
               
               
               Cow position:chr12:1767058-1766861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:176-331
               
               
               Cow position:chr12:7514956-7514802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:184-348
               
               
               Cow position:chr12:42143296-42143128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:185-372
               
               
               Cow position:chr12:24211541-24211355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):168, 65

               
               
               Conread position:187-372
               
               
               Cow position:chr12:23764618-23764436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:191-315
               
               
               Cow position:chr12:26962503-26962627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:191-365
               
               
               Cow position:chr12:30819372-30819193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):139, 60

               
               
               Conread position:191-372
               
               
               Cow position:chr12:31228698-31228514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):138, 17

               
               
               Conread position:192-348
               
               
               Cow position:chr12:40269938-40270094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:192-371
               
               
               Cow position:chr12:32419246-32419428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:192-372
               
               
               Cow position:chr12:2711625-2711440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:193-370
               
               
               Cow position:chr12:25321041-25320865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:193-372
               
               
               Cow position:chr12:30753847-30753662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:193-378
               
               
               Cow position:chr12:22894296-22894107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:194-317
               
               
               Cow position:chr12:2241701-2241828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:194-333
               
               
               Cow position:chr12:33319544-33319680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:194-362
               
               
               Cow position:chr12:45723440-45723268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:194-372
               
               
               Cow position:chr12:29779785-29779972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:196-344
               
               
               Cow position:chr12:30226812-30226961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):133, 37

               
               
               Conread position:196-372
               
               
               Cow position:chr12:34007426-34007247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:198-313
               
               
               Cow position:chr12:34171546-34171429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:198-348
               
               
               Cow position:chr12:27572118-27572272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:199-364
               
               
               Cow position:chr12:25445034-25444864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 51

               
               
               Conread position:199-372
               
               
               Cow position:chr12:18943537-18943716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:200-352
               
               
               Cow position:chr12:23912889-23913046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:200-369
               
               
               Cow position:chr12:27037330-27037505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):74, 68

               
               
               Conread position:200-372
               
               
               Cow position:chr12:7000483-7000661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:206-327
               
               
               Cow position:chr12:4962749-4962627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:206-370
               
               
               Cow position:chr12:16342004-16341837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 13

               
               
               Conread position:206-389
               
               
               Cow position:chr12:30805970-30805779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:207-348
               
               
               Cow position:chr12:22859576-22859435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr12:29969690-29969521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:208-372
               
               
               Cow position:chr12:37993620-37993790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:208-389
               
               
               Cow position:chr12:29995351-29995536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 140

               
               
               Conread position:210-328
               
               
               Cow position:chr12:28651223-28651105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr12:32715154-32715037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:210-334
               
               
               Cow position:chr12:24186381-24186504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:210-334
               
               
               Cow position:chr12:38182603-38182477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:210-356
               
               
               Cow position:chr12:32392026-32391884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:210-365
               
               
               Cow position:chr12:29770468-29770623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:210-372
               
               
               Cow position:chr12:3675419-3675585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 58

               
               
               Conread position:210-372
               
               
               Cow position:chr12:34165692-34165527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 56

               
               
               Conread position:210-372
               
               
               Cow position:chr12:42698136-42698293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):117, 128

               
               
               Conread position:210-389
               
               
               Cow position:chr12:7920353-7920167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:211-326
               
               
               Cow position:chr12:11583818-11583703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-355
               
               
               Cow position:chr12:15832300-15832161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr12:14131661-14131826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr12:45167911-45168077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):116, 58

               
               
               Conread position:212-348
               
               
               Cow position:chr12:27430615-27430474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:212-366
               
               
               Cow position:chr12:42163146-42162995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):138, 42

               
               
               Conread position:212-371
               
               
               Cow position:chr12:18765868-18766030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):117, 8

               
               
               Conread position:213-328
               
               
               Cow position:chr12:44846755-44846640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:213-353
               
               
               Cow position:chr12:3454801-3454662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr12:22469618-22469504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-347
               
               
               Cow position:chr12:25456516-25456377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr12:7110303-7110139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr12:8943118-8943281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 157

               
               
               Conread position:215-361
               
               
               Cow position:chr12:24437530-24437682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr12:35368747-35368584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr12:36994012-36994174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 7

               
               
               Conread position:216-372
               
               
               Cow position:chr12:30919529-30919367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr12:31883441-31883282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):111, 93

               
               
               Conread position:216-372
               
               
               Cow position:chr12:41581214-41581056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):5, 19

               
               
               Conread position:217-348
               
               
               Cow position:chr12:26357269-26357403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 36

               
               
               Conread position:217-372
               
               
               Cow position:chr12:7978141-7977982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr12:23574865-23574705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:219-368
               
               
               Cow position:chr12:16056757-16056912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr12:45014782-45014621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:220-372
               
               
               Cow position:chr12:4596564-4596404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr12:6241417-6241261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:220-372
               
               
               Cow position:chr12:9914889-9914731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr12:13988469-13988311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr12:23836430-23836273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr12:37256113-37255962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr12:45090252-45090408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 85

               
               
               Conread position:220-388
               
               
               Cow position:chr12:3950246-3950420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:221-352
               
               
               Cow position:chr12:44559948-44559814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:221-354
               
               
               Cow position:chr12:45782325-45782188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr12:4341645-4341802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr12:42749537-42749382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:222-333
               
               
               Cow position:chr12:12699543-12699654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-343
               
               
               Cow position:chr12:25814251-25814129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 119

               
               
               Conread position:222-348
               
               
               Cow position:chr12:24397067-24397195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:222-365
               
               
               Cow position:chr12:25355658-25355805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-368
               
               
               Cow position:chr12:45001970-45002121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:222-369
               
               
               Cow position:chr12:9514459-9514306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr12:26749854-26750009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr12:31269255-31269097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr12:7457447-7457601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr12:18523667-18523506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr12:21780259-21780104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:222-372
               
               
               Cow position:chr12:27563281-27563435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:222-372
               
               
               Cow position:chr12:29966200-29966049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr12:30661854-30662008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:222-372
               
               
               Cow position:chr12:33976298-33976141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr12:35241008-35241163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):108, 44

               
               
               Conread position:222-372
               
               
               Cow position:chr12:41159685-41159532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr12:42254764-42254610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:222-372
               
               
               Cow position:chr12:42967092-42966942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:222-372
               
               
               Cow position:chr12:44901356-44901203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):110, 53

               
               
               Conread position:222-375
               
               
               Cow position:chr12:12532394-12532551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:223-357
               
               
               Cow position:chr12:31841666-31841528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr12:5609415-5609565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr12:29675045-29675196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-348
               
               
               Cow position:chr12:3586214-3586086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr12:29057483-29057332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:224-371
               
               
               Cow position:chr12:42181033-42181186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr12:5635357-5635511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr12:6410638-6410793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr12:20479242-20479389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):112, 100

               
               
               Conread position:224-372
               
               
               Cow position:chr12:35770925-35771079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr12:4866912-4866759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr12:41474184-41474031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:226-373
               
               
               Cow position:chr12:42759966-42760115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:227-347
               
               
               Cow position:chr12:18996905-18996779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:227-371
               
               
               Cow position:chr12:3197359-3197212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:227-373
               
               
               Cow position:chr12:23446813-23446664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 120

               
               
               Conread position:228-348
               
               
               Cow position:chr12:44542358-44542234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr12:4720039-4719889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr12:11587866-11587716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr12:11836326-11836176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr12:37008615-37008761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr12:40157933-40158080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):97, 74

               
               
               Conread position:228-372
               
               
               Cow position:chr12:48415424-48415570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-377
               
               
               Cow position:chr12:5543703-5543856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr12:4769015-4768868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:230-361
               
               
               Cow position:chr12:43854983-43854847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:230-369
               
               
               Cow position:chr12:27357477-27357333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:230-387
               
               
               Cow position:chr12:15173913-15173750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr12:23916931-23916788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:233-345
               
               
               Cow position:chr12:6666657-6666545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr12:6210070-6210216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr12:15700167-15700020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):69, 58

               
               
               Conread position:233-372
               
               
               Cow position:chr12:24023715-24023860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-327
               
               
               Cow position:chr12:14987885-14987792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-343
               
               
               Cow position:chr12:24391405-24391296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-371
               
               
               Cow position:chr12:34195624-34195764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr12:15163225-15163082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr12:17881947-17881803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr12:31532318-31532458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr12:33851443-33851303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr12:44517652-44517796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:235-371
               
               
               Cow position:chr12:12912852-12912994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr12:1701720-1701863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr12:4793282-4793139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr12:6754281-6754138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr12:18103528-18103667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 111

               
               
               Conread position:236-372
               
               
               Cow position:chr12:23798183-23798043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr12:31517088-31517229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:236-372
               
               
               Cow position:chr12:34161498-34161356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:237-369
               
               
               Cow position:chr12:19691151-19691286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:238-371
               
               
               Cow position:chr12:3616078-3615945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 7

               
               
               Conread position:239-372
               
               
               Cow position:chr12:30210564-30210425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:242-370
               
               
               Cow position:chr12:9229422-9229556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr12:28582432-28582562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:242-389
               
               
               Cow position:chr12:46333422-46333275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 25

               
               
               Conread position:245-372
               
               
               Cow position:chr12:31429496-31429626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:248-372
               
               
               Cow position:chr12:23855904-23855781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:257-372
               
               
               Cow position:chr12:17717125-17717012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:127-372
               
               
               Cow position:chr13:13765548-13765790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:150-368
               
               
               Cow position:chr13:9589151-9589369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 41

               
               
               Conread position:150-383
               
               
               Cow position:chr13:39367746-39367979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):174, 36

               
               
               Conread position:160-348
               
               
               Cow position:chr13:563568-563389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:161-328
               
               
               Cow position:chr13:9884326-9884489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:161-372
               
               
               Cow position:chr13:11095970-11096184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:163-370
               
               
               Cow position:chr13:9117768-9117567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):159, 13

               
               
               Conread position:167-371
               
               
               Cow position:chr13:20401190-20400991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:167-372
               
               
               Cow position:chr13:11591545-11591755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:176-345
               
               
               Cow position:chr13:32363377-32363209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:176-371
               
               
               Cow position:chr13:36771616-36771420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):151, 62

               
               
               Conread position:176-372
               
               
               Cow position:chr13:26369327-26369528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):148, 131

               
               
               Conread position:177-322
               
               
               Cow position:chr13:6267056-6267201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:181-326
               
               
               Cow position:chr13:547301-547446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:181-372
               
               
               Cow position:chr13:43829051-43829249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:182-334
               
               
               Cow position:chr13:37021185-37021036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:182-351
               
               
               Cow position:chr13:15808579-15808746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):148, 26

               
               
               Conread position:183-372
               
               
               Cow position:chr13:21283890-21283699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 50

               
               
               Conread position:185-366
               
               
               Cow position:chr13:14771262-14771451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:192-326
               
               
               Cow position:chr13:26365724-26365858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:192-329
               
               
               Cow position:chr13:32387185-32387048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 78

               
               
               Conread position:192-372
               
               
               Cow position:chr13:1043140-1042964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):137, 34

               
               
               Conread position:192-372
               
               
               Cow position:chr13:51814113-51813931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):60, 138

               
               
               Conread position:192-372
               
               
               Cow position:chr13:56148342-56148528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):138, 14

               
               
               Conread position:192-372
               
               
               Cow position:chr13:56160625-56160439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):138, 14

               
               
               Conread position:193-348
               
               
               Cow position:chr13:1075216-1075060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):134, 18

               
               
               Conread position:193-366
               
               
               Cow position:chr13:10929169-10928994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:198-328
               
               
               Cow position:chr13:8355031-8355159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:198-371
               
               
               Cow position:chr13:5005828-5006001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:198-372
               
               
               Cow position:chr13:51116201-51116019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:199-371
               
               
               Cow position:chr13:51940559-51940738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:200-372
               
               
               Cow position:chr13:45725707-45725900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:203-372
               
               
               Cow position:chr13:37640420-37640593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):126, 58

               
               
               Conread position:207-372
               
               
               Cow position:chr13:60973914-60974080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):143, 54

               
               
               Conread position:208-326
               
               
               Cow position:chr13:21192929-21193047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr13:7076093-7076260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:208-372
               
               
               Cow position:chr13:42640224-42640387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:209-345
               
               
               Cow position:chr13:6608548-6608406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:210-323
               
               
               Cow position:chr13:17229556-17229667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:210-327
               
               
               Cow position:chr13:19467500-19467384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr13:18172173-18172291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-365
               
               
               Cow position:chr13:3209485-3209322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:210-365
               
               
               Cow position:chr13:17439931-17439773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:210-365
               
               
               Cow position:chr13:26889059-26889220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:210-368
               
               
               Cow position:chr13:45023368-45023211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):112, 43

               
               
               Conread position:210-369
               
               
               Cow position:chr13:23167264-23167099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:210-372
               
               
               Cow position:chr13:3211385-3211554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:210-372
               
               
               Cow position:chr13:54145628-54145471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):101, 40

               
               
               Conread position:210-374
               
               
               Cow position:chr13:27419239-27419077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:210-389
               
               
               Cow position:chr13:37381638-37381823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:211-363
               
               
               Cow position:chr13:21294913-21295071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:211-364
               
               
               Cow position:chr13:20706368-20706208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr13:38873104-38872943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):139, 23

               
               
               Conread position:212-328
               
               
               Cow position:chr13:41616207-41616093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:212-363
               
               
               Cow position:chr13:6389235-6389384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:212-373
               
               
               Cow position:chr13:3315836-3315669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:212-388
               
               
               Cow position:chr13:52586201-52586015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:213-373
               
               
               Cow position:chr13:39398492-39398659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 23

               
               
               Conread position:214-368
               
               
               Cow position:chr13:6183579-6183419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr13:42229154-42229314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:214-372
               
               
               Cow position:chr13:51901425-51901592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:215-328
               
               
               Cow position:chr13:23856053-23856166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-342
               
               
               Cow position:chr13:38702786-38702658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):109, 78

               
               
               Conread position:215-358
               
               
               Cow position:chr13:9900001-9900143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:215-365
               
               
               Cow position:chr13:37775364-37775209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):113, 54

               
               
               Conread position:215-369
               
               
               Cow position:chr13:37621515-37621358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:215-370
               
               
               Cow position:chr13:15083507-15083662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):128, 46

               
               
               Conread position:215-370
               
               
               Cow position:chr13:37069187-37069348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr13:43893482-43893317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 137

               
               
               Conread position:215-372
               
               
               Cow position:chr13:45352873-45353036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:216-331
               
               
               Cow position:chr13:40154888-40154772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:216-365
               
               
               Cow position:chr13:23960959-23960808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 52

               
               
               Conread position:217-328
               
               
               Cow position:chr13:28652585-28652696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-370
               
               
               Cow position:chr13:6926362-6926520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:217-372
               
               
               Cow position:chr13:12673442-12673290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:217-372
               
               
               Cow position:chr13:19750559-19750720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:218-343
               
               
               Cow position:chr13:47643905-47644035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:218-371
               
               
               Cow position:chr13:9265981-9265827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 43

               
               
               Conread position:218-371
               
               
               Cow position:chr13:13775398-13775239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr13:20271379-20271221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:218-373
               
               
               Cow position:chr13:2404607-2404757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 46

               
               
               Conread position:219-372
               
               
               Cow position:chr13:25547736-25547577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:220-369
               
               
               Cow position:chr13:19278945-19279096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:220-371
               
               
               Cow position:chr13:34728990-34728843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:220-372
               
               
               Cow position:chr13:10989221-10989069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:220-372
               
               
               Cow position:chr13:44003549-44003704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:221-369
               
               
               Cow position:chr13:1462444-1462295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr13:1568780-1568925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 45

               
               
               Conread position:221-372
               
               
               Cow position:chr13:14576061-14576215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 146

               
               
               Conread position:221-372
               
               
               Cow position:chr13:21981124-21980971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 57

               
               
               Conread position:221-372
               
               
               Cow position:chr13:43919414-43919256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:222-329
               
               
               Cow position:chr13:42613935-42614040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:222-333
               
               
               Cow position:chr13:15162783-15162671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-341
               
               
               Cow position:chr13:17135365-17135245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:222-347
               
               
               Cow position:chr13:3153600-3153728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 29

               
               
               Conread position:222-356
               
               
               Cow position:chr13:54236661-54236792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 67

               
               
               Conread position:222-366
               
               
               Cow position:chr13:37751218-37751068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:222-367
               
               
               Cow position:chr13:14796058-14796205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:222-369
               
               
               Cow position:chr13:54128746-54128594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr13:6486400-6486246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr13:8667468-8667623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr13:10925070-10924916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:222-372
               
               
               Cow position:chr13:12876123-12875970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):108, 66

               
               
               Conread position:222-372
               
               
               Cow position:chr13:16908066-16908222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr13:18994975-18995128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr13:21275708-21275864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr13:24230062-24230219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr13:28552439-28552593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:222-372
               
               
               Cow position:chr13:32017663-32017507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr13:34873438-34873594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr13:37593098-37592941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr13:50768448-50768601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr13:52459631-52459479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:222-388
               
               
               Cow position:chr13:620395-620233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):67, 53

               
               
               Conread position:222-388
               
               
               Cow position:chr13:17159029-17158855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:223-371
               
               
               Cow position:chr13:28536467-28536318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 122

               
               
               Conread position:223-372
               
               
               Cow position:chr13:11643789-11643944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr13:17837801-17837955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:223-377
               
               
               Cow position:chr13:17813321-17813481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:224-343
               
               
               Cow position:chr13:57929719-57929600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-348
               
               
               Cow position:chr13:28439260-28439388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr13:18340384-18340537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr13:12925628-12925781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 127

               
               
               Conread position:224-372
               
               
               Cow position:chr13:17350207-17350355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):98, 7

               
               
               Conread position:224-372
               
               
               Cow position:chr13:37503732-37503581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 91

               
               
               Conread position:224-372
               
               
               Cow position:chr13:47186086-47186239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:224-372
               
               
               Cow position:chr13:47243701-47243550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr13:51822021-51821874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:224-389
               
               
               Cow position:chr13:15282083-15281918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:224-389
               
               
               Cow position:chr13:52055741-52055570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr13:18166584-18166737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr13:62007959-62008112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr13:6974015-6974166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:226-372
               
               
               Cow position:chr13:17823095-17822950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):106, 8

               
               
               Conread position:226-372
               
               
               Cow position:chr13:19393145-19393296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):99, 88

               
               
               Conread position:227-369
               
               
               Cow position:chr13:585016-584872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:227-374
               
               
               Cow position:chr13:54652466-54652322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:228-326
               
               
               Cow position:chr13:52249193-52249095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-328
               
               
               Cow position:chr13:14063668-14063566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr13:15289066-15288923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 117

               
               
               Conread position:228-370
               
               
               Cow position:chr13:7046725-7046873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 139

               
               
               Conread position:228-372
               
               
               Cow position:chr13:11260130-11260271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr13:18491451-18491601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr13:40491069-40491220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr13:42200473-42200624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:228-389
               
               
               Cow position:chr13:15195348-15195188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:229-372
               
               
               Cow position:chr13:4552675-4552819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:229-372
               
               
               Cow position:chr13:24110336-24110485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr13:25926646-25926795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:229-389
               
               
               Cow position:chr13:15991375-15991209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:230-371
               
               
               Cow position:chr13:10522794-10522937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 140

               
               
               Conread position:230-372
               
               
               Cow position:chr13:56035002-56034855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr13:24753743-24753892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:233-365
               
               
               Cow position:chr13:21242224-21242092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 109

               
               
               Conread position:233-370
               
               
               Cow position:chr13:47193248-47193384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:233-371
               
               
               Cow position:chr13:9975216-9975070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:233-371
               
               
               Cow position:chr13:51857024-51856881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 5

               
               
               Conread position:233-372
               
               
               Cow position:chr13:7149649-7149507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:233-372
               
               
               Cow position:chr13:24715101-24715247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-371
               
               
               Cow position:chr13:8699876-8699733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr13:8362882-8362746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr13:15996895-15997039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr13:17563601-17563744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:235-331
               
               
               Cow position:chr13:37979713-37979617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr13:15193024-15192883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr13:20519924-20520066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr13:34261094-34261239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:238-370
               
               
               Cow position:chr13:827111-827246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:238-372
               
               
               Cow position:chr13:15143976-15143838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:238-372
               
               
               Cow position:chr13:43762034-43762173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:243-372
               
               
               Cow position:chr13:11060857-11060993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:244-372
               
               
               Cow position:chr13:23270334-23270204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr13:25428351-25428219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:246-372
               
               
               Cow position:chr13:8232875-8233003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:269-372
               
               
               Cow position:chr13:15739589-15739694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:156-328
               
               
               Cow position:chr14:46125434-46125258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:160-351
               
               
               Cow position:chr14:32470249-32470444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:160-371
               
               
               Cow position:chr14:25824534-25824756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:161-351
               
               
               Cow position:chr14:4209353-4209543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):171, 30

               
               
               Conread position:164-372
               
               
               Cow position:chr14:1796041-1796251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:168-348
               
               
               Cow position:chr14:45069210-45069041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:176-371
               
               
               Cow position:chr14:1868524-1868322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 49

               
               
               Conread position:176-372
               
               
               Cow position:chr14:26097834-26097631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:178-371
               
               
               Cow position:chr14:803548-803746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:182-333
               
               
               Cow position:chr14:28306715-28306861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:182-371
               
               
               Cow position:chr14:40754383-40754186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:190-346
               
               
               Cow position:chr14:39423009-39422848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:191-325
               
               
               Cow position:chr14:39960969-39960836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:192-346
               
               
               Cow position:chr14:42276498-42276657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr14:22583033-22583211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:193-330
               
               
               Cow position:chr14:25611365-25611499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:193-333
               
               
               Cow position:chr14:23719445-23719307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:193-353
               
               
               Cow position:chr14:16761732-16761571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:194-372
               
               
               Cow position:chr14:18763555-18763376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:195-328
               
               
               Cow position:chr14:29631811-29631943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 59

               
               
               Conread position:195-371
               
               
               Cow position:chr14:33247551-33247368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:196-375
               
               
               Cow position:chr14:31138862-31138676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:197-372
               
               
               Cow position:chr14:40165308-40165486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):133, 17

               
               
               Conread position:199-329
               
               
               Cow position:chr14:10631235-10631106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:200-372
               
               
               Cow position:chr14:42436909-42437085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):125, 147

               
               
               Conread position:204-360
               
               
               Cow position:chr14:39926098-39926256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:204-372
               
               
               Cow position:chr14:1978185-1978007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:206-372
               
               
               Cow position:chr14:35503249-35503424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:207-370
               
               
               Cow position:chr14:12634990-12634822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 71

               
               
               Conread position:207-372
               
               
               Cow position:chr14:28115290-28115125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:208-369
               
               
               Cow position:chr14:16457412-16457576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:208-372
               
               
               Cow position:chr14:16340888-16341054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:210-324
               
               
               Cow position:chr14:48762283-48762396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:210-334
               
               
               Cow position:chr14:20362070-20361948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:210-371
               
               
               Cow position:chr14:25778997-25779158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:210-372
               
               
               Cow position:chr14:19129400-19129568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr14:22997682-22997515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 53

               
               
               Conread position:210-372
               
               
               Cow position:chr14:24981353-24981517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr14:34331433-34331264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr14:37884022-37883854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:211-329
               
               
               Cow position:chr14:33758265-33758383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:211-334
               
               
               Cow position:chr14:47200228-47200103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:211-348
               
               
               Cow position:chr14:33828017-33828156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:211-348
               
               
               Cow position:chr14:37436816-37436674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:211-369
               
               
               Cow position:chr14:45577197-45577033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr14:20481946-20481781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:212-328
               
               
               Cow position:chr14:34983763-34983882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:212-344
               
               
               Cow position:chr14:20070967-20071103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:212-347
               
               
               Cow position:chr14:24580537-24580675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 54

               
               
               Conread position:213-347
               
               
               Cow position:chr14:25073024-25073160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:213-372
               
               
               Cow position:chr14:16749786-16749623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:213-372
               
               
               Cow position:chr14:28003864-28004028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:213-372
               
               
               Cow position:chr14:48900072-48900236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:214-352
               
               
               Cow position:chr14:38674020-38673879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:214-369
               
               
               Cow position:chr14:10078165-10078327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr14:27076875-27077039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:214-376
               
               
               Cow position:chr14:18350958-18350790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:215-322
               
               
               Cow position:chr14:25675327-25675221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr14:38144208-38144045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:216-348
               
               
               Cow position:chr14:27303558-27303694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:216-365
               
               
               Cow position:chr14:18301860-18302016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 52

               
               
               Conread position:216-372
               
               
               Cow position:chr14:39095280-39095122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:216-389
               
               
               Cow position:chr14:42419373-42419194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:217-365
               
               
               Cow position:chr14:34096662-34096512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:217-372
               
               
               Cow position:chr14:12035310-12035469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr14:39037126-39037283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:218-372
               
               
               Cow position:chr14:30431666-30431506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr14:4203195-4203036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr14:24712724-24712562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:219-372
               
               
               Cow position:chr14:36443115-36442956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr14:5959084-5958925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:221-328
               
               
               Cow position:chr14:4848253-4848360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:221-370
               
               
               Cow position:chr14:4282601-4282449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr14:3943645-3943488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr14:33830207-33830363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-322
               
               
               Cow position:chr14:21530167-21530067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr14:18412685-18412579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr14:32784209-32784103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-332
               
               
               Cow position:chr14:42153496-42153388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:222-345
               
               
               Cow position:chr14:41191189-41191067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:222-347
               
               
               Cow position:chr14:18270269-18270396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:222-363
               
               
               Cow position:chr14:27364486-27364631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr14:26918902-26919057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr14:19594230-19594076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:222-371
               
               
               Cow position:chr14:50362700-50362855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr14:7036451-7036295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr14:7695172-7695329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr14:10609586-10609742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr14:11056825-11056671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr14:11285486-11285638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr14:15428384-15428540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr14:21933436-21933281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:222-372
               
               
               Cow position:chr14:22941822-22941666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr14:28378265-28378421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:222-372
               
               
               Cow position:chr14:35381498-35381652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:222-373
               
               
               Cow position:chr14:23424169-23424322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:222-373
               
               
               Cow position:chr14:23442930-23443083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:223-372
               
               
               Cow position:chr14:9901091-9901240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 75

               
               
               Conread position:224-334
               
               
               Cow position:chr14:38920861-38920971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:224-369
               
               
               Cow position:chr14:1646276-1646127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:224-369
               
               
               Cow position:chr14:14466547-14466404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:224-371
               
               
               Cow position:chr14:21357466-21357616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:224-372
               
               
               Cow position:chr14:16032920-16033067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):126, 98

               
               
               Conread position:224-372
               
               
               Cow position:chr14:22916382-22916229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):101, 72

               
               
               Conread position:224-372
               
               
               Cow position:chr14:23078883-23078730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:224-373
               
               
               Cow position:chr14:20466845-20466993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 114

               
               
               Conread position:225-349
               
               
               Cow position:chr14:24785567-24785695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:225-371
               
               
               Cow position:chr14:40952180-40952319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 41

               
               
               Conread position:226-338
               
               
               Cow position:chr14:15228450-15228562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:226-372
               
               
               Cow position:chr14:6541816-6541662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr14:8101703-8101852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr14:19951477-19951630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr14:28924079-28924230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:228-329
               
               
               Cow position:chr14:6384563-6384463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:228-359
               
               
               Cow position:chr14:15211843-15211975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:228-372
               
               
               Cow position:chr14:21535394-21535244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr14:36425495-36425349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr14:37447552-37447405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr14:47672968-47672823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:229-348
               
               
               Cow position:chr14:26456286-26456409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr14:12954469-12954323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):98, 32

               
               
               Conread position:229-372
               
               
               Cow position:chr14:14316800-14316945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:230-334
               
               
               Cow position:chr14:14580743-14580846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr14:27733522-27733664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 48

               
               
               Conread position:233-370
               
               
               Cow position:chr14:25381346-25381485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:233-371
               
               
               Cow position:chr14:16352266-16352405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:233-372
               
               
               Cow position:chr14:29723668-29723529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:233-372
               
               
               Cow position:chr14:41267815-41267686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-347
               
               
               Cow position:chr14:32753843-32753729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:234-368
               
               
               Cow position:chr14:46654623-46654486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:234-372
               
               
               Cow position:chr14:8786628-8786488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:234-372
               
               
               Cow position:chr14:18309389-18309245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr14:19618832-19618689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:235-365
               
               
               Cow position:chr14:11643330-11643201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):96, 115

               
               
               Conread position:235-370
               
               
               Cow position:chr14:44084570-44084429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr14:4877310-4877169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr14:12511977-12511839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:236-348
               
               
               Cow position:chr14:22381653-22381542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr14:15039692-15039552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr14:41253071-41252933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:237-372
               
               
               Cow position:chr14:46997960-46998101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:237-389
               
               
               Cow position:chr14:19863513-19863354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:238-333
               
               
               Cow position:chr14:24806519-24806615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr14:13809863-13809996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:240-371
               
               
               Cow position:chr14:27275087-27275222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:241-372
               
               
               Cow position:chr14:23478752-23478885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr14:17841362-17841230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:246-372
               
               
               Cow position:chr14:33309573-33309441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:246-372
               
               
               Cow position:chr14:36555216-36555093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:254-371
               
               
               Cow position:chr14:25403997-25403874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:88-372
               
               
               Cow position:chr15:4179131-4178835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:90-372
               
               
               Cow position:chr15:39317010-39316733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):234, 36

               
               
               Conread position:152-372
               
               
               Cow position:chr15:5044585-5044368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:160-328
               
               
               Cow position:chr15:1984191-1984355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:160-328
               
               
               Cow position:chr15:24953632-24953464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:160-372
               
               
               Cow position:chr15:17664355-17664135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 48

               
               
               Conread position:160-372
               
               
               Cow position:chr15:51633178-51632954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):34, 213

               
               
               Conread position:160-389
               
               
               Cow position:chr15:43788147-43788378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 163

               
               
               Conread position:161-340
               
               
               Cow position:chr15:12441978-12441793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:176-372
               
               
               Cow position:chr15:41418921-41418724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:179-327
               
               
               Cow position:chr15:20726006-20725858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:181-312
               
               
               Cow position:chr15:42462024-42462155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:183-369
               
               
               Cow position:chr15:27063608-27063415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:186-348
               
               
               Cow position:chr15:42190361-42190528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:192-341
               
               
               Cow position:chr15:13251032-13251178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr15:14261334-14261150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr15:35441156-35440973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:193-348
               
               
               Cow position:chr15:51701379-51701221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:193-372
               
               
               Cow position:chr15:21389239-21389058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):129, 60

               
               
               Conread position:195-370
               
               
               Cow position:chr15:50660551-50660731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:195-389
               
               
               Cow position:chr15:38827399-38827198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:196-372
               
               
               Cow position:chr15:35945456-35945638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:198-369
               
               
               Cow position:chr15:10431743-10431919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:198-374
               
               
               Cow position:chr15:21166496-21166314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:199-389
               
               
               Cow position:chr15:26919348-26919150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:200-372
               
               
               Cow position:chr15:22136621-22136792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):143, 116

               
               
               Conread position:201-389
               
               
               Cow position:chr15:44280034-44280228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:202-372
               
               
               Cow position:chr15:23719550-23719374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:204-372
               
               
               Cow position:chr15:22871549-22871718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:144
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):146, 88

               
               
               Conread position:206-379
               
               
               Cow position:chr15:4903933-4904108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):144, 27

               
               
               Conread position:207-372
               
               
               Cow position:chr15:17100770-17100601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):113, 34

               
               
               Conread position:207-372
               
               
               Cow position:chr15:31495284-31495115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:207-372
               
               
               Cow position:chr15:49273896-49274062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:208-328
               
               
               Cow position:chr15:35205212-35205094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:208-369
               
               
               Cow position:chr15:27016308-27016144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr15:6427690-6427521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:208-372
               
               
               Cow position:chr15:34207248-34207085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr15:12357560-12357676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr15:33976754-33976636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-366
               
               
               Cow position:chr15:42789208-42789045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:210-369
               
               
               Cow position:chr15:275594-275759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:210-369
               
               
               Cow position:chr15:47592722-47592567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 85

               
               
               Conread position:210-371
               
               
               Cow position:chr15:31024934-31025100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr15:4509857-4509704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:210-372
               
               
               Cow position:chr15:18776811-18776642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr15:20950206-20950362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):133, 44

               
               
               Conread position:210-372
               
               
               Cow position:chr15:29604759-29604591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:210-387
               
               
               Cow position:chr15:23780126-23779947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:210-389
               
               
               Cow position:chr15:14281487-14281677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:210-389
               
               
               Cow position:chr15:17353706-17353524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 59

               
               
               Conread position:211-372
               
               
               Cow position:chr15:12870922-12870755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr15:15154245-15154409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 23

               
               
               Conread position:211-372
               
               
               Cow position:chr15:29330948-29331109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):136, 129

               
               
               Conread position:212-372
               
               
               Cow position:chr15:5726268-5726434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:212-389
               
               
               Cow position:chr15:32977903-32977719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:213-328
               
               
               Cow position:chr15:10442558-10442441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:213-367
               
               
               Cow position:chr15:10608359-10608202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):117, 20

               
               
               Conread position:213-372
               
               
               Cow position:chr15:13554299-13554462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):116, 9

               
               
               Conread position:213-372
               
               
               Cow position:chr15:45584677-45584837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:214-334
               
               
               Cow position:chr15:16911719-16911596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:214-348
               
               
               Cow position:chr15:29793248-29793110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr15:2141358-2141194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr15:22984524-22984683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:214-377
               
               
               Cow position:chr15:39520113-39520282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:215-328
               
               
               Cow position:chr15:16644840-16644727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-369
               
               
               Cow position:chr15:25650462-25650307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):107, 19

               
               
               Conread position:215-372
               
               
               Cow position:chr15:20459362-20459197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr15:39621286-39621447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:215-373
               
               
               Cow position:chr15:10660607-10660445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 8

               
               
               Conread position:216-372
               
               
               Cow position:chr15:225847-225695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:217-345
               
               
               Cow position:chr15:4500651-4500783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:217-351
               
               
               Cow position:chr15:12913550-12913417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:217-369
               
               
               Cow position:chr15:23275490-23275648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:217-371
               
               
               Cow position:chr15:915893-915735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 46

               
               
               Conread position:217-389
               
               
               Cow position:chr15:21803710-21803535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:218-351
               
               
               Cow position:chr15:5522905-5523039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 123

               
               
               Conread position:218-372
               
               
               Cow position:chr15:38883098-38883256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:219-325
               
               
               Cow position:chr15:14868590-14868484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-349
               
               
               Cow position:chr15:12723039-12723169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr15:22939375-22939216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr15:24629412-24629256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:220-328
               
               
               Cow position:chr15:26896743-26896635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-370
               
               
               Cow position:chr15:48095312-48095467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr15:16583739-16583587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):110, 51

               
               
               Conread position:220-372
               
               
               Cow position:chr15:31637253-31637410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):107, 25

               
               
               Conread position:220-372
               
               
               Cow position:chr15:52432294-52432455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:220-385
               
               
               Cow position:chr15:286429-286600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:221-344
               
               
               Cow position:chr15:17621366-17621243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:221-360
               
               
               Cow position:chr15:22531622-22531760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:221-371
               
               
               Cow position:chr15:1284214-1284380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr15:9465629-9465786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr15:16616145-16616295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:221-372
               
               
               Cow position:chr15:29810074-29810228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr15:36391626-36391784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:221-372
               
               
               Cow position:chr15:39286458-39286300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:221-372
               
               
               Cow position:chr15:48590288-48590136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:222-328
               
               
               Cow position:chr15:23927929-23927823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-337
               
               
               Cow position:chr15:10073915-10074032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-347
               
               
               Cow position:chr15:44119514-44119389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr15:36435158-36435312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr15:4295715-4295872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr15:4418446-4418291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):107, 39

               
               
               Conread position:222-372
               
               
               Cow position:chr15:6129010-6128857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:222-372
               
               
               Cow position:chr15:19553970-19553812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:222-372
               
               
               Cow position:chr15:20534497-20534341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr15:22444031-22443879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr15:26573333-26573488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 44

               
               
               Conread position:222-372
               
               
               Cow position:chr15:27900557-27900402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr15:32324252-32324099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr15:36793541-36793385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:222-373
               
               
               Cow position:chr15:20487250-20487093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-375
               
               
               Cow position:chr15:39473979-39473823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-395
               
               
               Cow position:chr15:1330151-1329972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 176

               
               
               Conread position:223-328
               
               
               Cow position:chr15:6046924-6046819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr15:31560433-31560288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:223-372
               
               
               Cow position:chr15:36388245-36388400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:223-389
               
               
               Cow position:chr15:41582834-41583006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:224-372
               
               
               Cow position:chr15:4138090-4138241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 86

               
               
               Conread position:224-372
               
               
               Cow position:chr15:21821969-21821815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr15:21893736-21893887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:224-372
               
               
               Cow position:chr15:22553585-22553433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr15:26912117-26911967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr15:30983847-30983710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr15:31928941-31928787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr15:43626421-43626578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr15:18671498-18671347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 55

               
               
               Conread position:225-372
               
               
               Cow position:chr15:20422821-20422673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:226-326
               
               
               Cow position:chr15:5710360-5710459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr15:244737-244840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:226-348
               
               
               Cow position:chr15:32456971-32456849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-368
               
               
               Cow position:chr15:22532209-22532353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:226-370
               
               
               Cow position:chr15:4248104-4248255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr15:41528015-41527867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:227-332
               
               
               Cow position:chr15:13846611-13846505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr15:9106994-9107143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:227-372
               
               
               Cow position:chr15:28823859-28823704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:228-372
               
               
               Cow position:chr15:1297700-1297848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:228-372
               
               
               Cow position:chr15:5408938-5408797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr15:26529851-26529999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:228-372
               
               
               Cow position:chr15:43114762-43114618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:230-372
               
               
               Cow position:chr15:6037492-6037346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:232-329
               
               
               Cow position:chr15:16908396-16908493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-365
               
               
               Cow position:chr15:12332439-12332576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:233-372
               
               
               Cow position:chr15:30981907-30982048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:234-370
               
               
               Cow position:chr15:53300391-53300254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):112, 46

               
               
               Conread position:234-372
               
               
               Cow position:chr15:5235032-5234892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr15:6272922-6272781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:234-372
               
               
               Cow position:chr15:14176534-14176390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr15:19186648-19186509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 75

               
               
               Conread position:234-372
               
               
               Cow position:chr15:34139946-34140093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-378
               
               
               Cow position:chr15:38820663-38820811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:234-389
               
               
               Cow position:chr15:9497535-9497374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:235-348
               
               
               Cow position:chr15:40309359-40309474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:235-372
               
               
               Cow position:chr15:16603791-16603928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):112, 105

               
               
               Conread position:235-372
               
               
               Cow position:chr15:19950445-19950581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:235-372
               
               
               Cow position:chr15:36773727-36773589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):118, 52

               
               
               Conread position:235-389
               
               
               Cow position:chr15:34284445-34284284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:236-370
               
               
               Cow position:chr15:5158341-5158481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr15:5717680-5717819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:236-372
               
               
               Cow position:chr15:26158629-26158490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 114

               
               
               Conread position:236-372
               
               
               Cow position:chr15:27973250-27973108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:237-361
               
               
               Cow position:chr15:36458234-36458104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr15:795054-794912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr15:50322561-50322703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr15:31042837-31042978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:240-372
               
               
               Cow position:chr15:41000098-40999962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:241-372
               
               
               Cow position:chr15:16112372-16112509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:241-376
               
               
               Cow position:chr15:9781443-9781580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:242-329
               
               
               Cow position:chr15:18449971-18450058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:242-364
               
               
               Cow position:chr15:23798557-23798429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:243-392
               
               
               Cow position:chr15:19920359-19920206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:246-372
               
               
               Cow position:chr15:37205025-37205157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:248-369
               
               
               Cow position:chr15:43599168-43599295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:253-372
               
               
               Cow position:chr15:20351816-20351941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:85-351
               
               
               Cow position:chr16:22327781-22327514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:85-369
               
               
               Cow position:chr16:7981060-7980777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 26

               
               
               Conread position:85-372
               
               
               Cow position:chr16:12500896-12501179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:160-328
               
               
               Cow position:chr16:35297277-35297108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:160-369
               
               
               Cow position:chr16:496185-496392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):114, 20

               
               
               Conread position:160-372
               
               
               Cow position:chr16:7550159-7549949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):167, 29

               
               
               Conread position:161-363
               
               
               Cow position:chr16:7499247-7499045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):179, 6

               
               
               Conread position:163-372
               
               
               Cow position:chr16:11391098-11390884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):161, 66

               
               
               Conread position:167-361
               
               
               Cow position:chr16:12454601-12454796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):160, 32

               
               
               Conread position:173-326
               
               
               Cow position:chr16:23187724-23187577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:176-372
               
               
               Cow position:chr16:55968616-55968423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:177-328
               
               
               Cow position:chr16:7601176-7601023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 68

               
               
               Conread position:177-328
               
               
               Cow position:chr16:17291838-17291991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:177-372
               
               
               Cow position:chr16:46429973-46430168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):145, 36

               
               
               Conread position:178-376
               
               
               Cow position:chr16:20265380-20265585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 92

               
               
               Conread position:181-372
               
               
               Cow position:chr16:13414491-13414685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):141, 25

               
               
               Conread position:184-323
               
               
               Cow position:chr16:48099633-48099496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:184-370
               
               
               Cow position:chr16:33530584-33530392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:185-372
               
               
               Cow position:chr16:5727100-5726915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):133, 48

               
               
               Conread position:190-372
               
               
               Cow position:chr16:9596539-9596351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:192-371
               
               
               Cow position:chr16:6310538-6310719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):132, 41

               
               
               Conread position:192-372
               
               
               Cow position:chr16:20025608-20025425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):5, 54

               
               
               Conread position:192-372
               
               
               Cow position:chr16:22804429-22804616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 176

               
               
               Conread position:193-311
               
               
               Cow position:chr16:7155497-7155613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:193-372
               
               
               Cow position:chr16:13712768-13712952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):134, 30

               
               
               Conread position:195-328
               
               
               Cow position:chr16:33135101-33134968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:195-372
               
               
               Cow position:chr16:14758891-14758719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):132, 52

               
               
               Conread position:198-328
               
               
               Cow position:chr16:3114700-3114570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-334
               
               
               Cow position:chr16:26069909-26069775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:198-372
               
               
               Cow position:chr16:9500679-9500503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 54

               
               
               Conread position:199-328
               
               
               Cow position:chr16:11922868-11922997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:199-328
               
               
               Cow position:chr16:39416676-39416804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:199-372
               
               
               Cow position:chr16:55592726-55592545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:200-346
               
               
               Cow position:chr16:56843988-56844132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:201-329
               
               
               Cow position:chr16:51915727-51915600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:202-372
               
               
               Cow position:chr16:17627086-17626910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:203-368
               
               
               Cow position:chr16:19003378-19003548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:206-334
               
               
               Cow position:chr16:56906690-56906817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr16:1415152-1415317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):139, 6

               
               
               Conread position:208-322
               
               
               Cow position:chr16:14005970-14006082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:208-348
               
               
               Cow position:chr16:6378972-6379117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:208-369
               
               
               Cow position:chr16:27728410-27728243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:209-372
               
               
               Cow position:chr16:8205935-8206093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:209-377
               
               
               Cow position:chr16:24202717-24202889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:210-311
               
               
               Cow position:chr16:13725997-13725896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-315
               
               
               Cow position:chr16:45535356-45535251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr16:29608658-29608540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr16:52803805-52803924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:210-331
               
               
               Cow position:chr16:44683508-44683628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:210-371
               
               
               Cow position:chr16:13611304-13611472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr16:4399886-4399716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr16:8933279-8933444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr16:12097790-12097622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr16:18141177-18141345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:210-372
               
               
               Cow position:chr16:18353808-18353975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:210-372
               
               
               Cow position:chr16:22841911-22842076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:210-372
               
               
               Cow position:chr16:24403281-24403447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:210-372
               
               
               Cow position:chr16:43105368-43105534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:210-372
               
               
               Cow position:chr16:45044963-45044800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:211-322
               
               
               Cow position:chr16:43322997-43322886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr16:6319351-6319183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr16:10945294-10945457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):119, 7

               
               
               Conread position:211-372
               
               
               Cow position:chr16:17135872-17135708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr16:48448873-48448704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:211-372
               
               
               Cow position:chr16:52133370-52133536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 39

               
               
               Conread position:211-372
               
               
               Cow position:chr16:56875518-56875682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:212-328
               
               
               Cow position:chr16:15203222-15203338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-346
               
               
               Cow position:chr16:52705928-52706067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:212-369
               
               
               Cow position:chr16:29527969-29527813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:212-372
               
               
               Cow position:chr16:11390138-11390305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr16:45299782-45299947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 39

               
               
               Conread position:212-374
               
               
               Cow position:chr16:9279970-9280138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:212-376
               
               
               Cow position:chr16:14046384-14046546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):124, 85

               
               
               Conread position:212-377
               
               
               Cow position:chr16:3634263-3634093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 56

               
               
               Conread position:212-388
               
               
               Cow position:chr16:43276164-43275987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:213-345
               
               
               Cow position:chr16:12091517-12091653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:213-372
               
               
               Cow position:chr16:43675022-43674854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr16:27032721-27032607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-362
               
               
               Cow position:chr16:4059500-4059347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:214-365
               
               
               Cow position:chr16:5364046-5363888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:214-369
               
               
               Cow position:chr16:12010240-12010079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr16:8273693-8273857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 135

               
               
               Conread position:214-372
               
               
               Cow position:chr16:15960145-15960309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr16:29026350-29026189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr16:30174387-30174547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:214-372
               
               
               Cow position:chr16:52389765-52389601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:214-439
               
               
               Cow position:chr16:7619040-7619264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):136, 50

               
               
               Conread position:215-372
               
               
               Cow position:chr16:4192290-4192444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr16:15953677-15953840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):112, 19

               
               
               Conread position:215-372
               
               
               Cow position:chr16:18048012-18048174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:216-328
               
               
               Cow position:chr16:44954363-44954250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 105

               
               
               Conread position:216-328
               
               
               Cow position:chr16:56670776-56670888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-334
               
               
               Cow position:chr16:25657243-25657127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:216-339
               
               
               Cow position:chr16:8953540-8953663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:216-365
               
               
               Cow position:chr16:46548128-46548281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:216-372
               
               
               Cow position:chr16:45046982-45046817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr16:51610691-51610853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:217-328
               
               
               Cow position:chr16:17979925-17979815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:217-376
               
               
               Cow position:chr16:7447853-7448015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:218-328
               
               
               Cow position:chr16:29060518-29060408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-365
               
               
               Cow position:chr16:45122176-45122023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:218-370
               
               
               Cow position:chr16:15905109-15905267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr16:4736446-4736603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):106, 71

               
               
               Conread position:219-372
               
               
               Cow position:chr16:22738414-22738261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 42

               
               
               Conread position:219-385
               
               
               Cow position:chr16:53086202-53086366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:220-313
               
               
               Cow position:chr16:21974824-21974918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:220-369
               
               
               Cow position:chr16:34753821-34753976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr16:8673474-8673628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:220-372
               
               
               Cow position:chr16:17143072-17142915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:220-372
               
               
               Cow position:chr16:23955693-23955851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr16:50282293-50282452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:220-375
               
               
               Cow position:chr16:12220820-12220659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:221-369
               
               
               Cow position:chr16:40562367-40562216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:221-372
               
               
               Cow position:chr16:47855076-47854922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):98, 47

               
               
               Conread position:222-331
               
               
               Cow position:chr16:9950802-9950909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:222-348
               
               
               Cow position:chr16:47662865-47662739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-359
               
               
               Cow position:chr16:23811257-23811118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr16:38663574-38663727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 89

               
               
               Conread position:222-370
               
               
               Cow position:chr16:42633607-42633759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr16:2223260-2223416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr16:7441966-7442117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 51

               
               
               Conread position:222-372
               
               
               Cow position:chr16:7665774-7665618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr16:8448518-8448667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr16:9830583-9830426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 67

               
               
               Conread position:222-372
               
               
               Cow position:chr16:10032775-10032620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr16:32301869-32302026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr16:43308426-43308579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:222-372
               
               
               Cow position:chr16:43800780-43800935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:222-372
               
               
               Cow position:chr16:44138356-44138511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr16:49169244-49169400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr16:56082228-56082384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-373
               
               
               Cow position:chr16:13996059-13996215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr16:10773256-10773111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:224-328
               
               
               Cow position:chr16:27326990-27327095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-333
               
               
               Cow position:chr16:19053748-19053857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-365
               
               
               Cow position:chr16:4910390-4910537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-365
               
               
               Cow position:chr16:33646149-33646003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:224-370
               
               
               Cow position:chr16:50286647-50286496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):103, 118

               
               
               Conread position:224-372
               
               
               Cow position:chr16:7812825-7812671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr16:11957444-11957597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:224-372
               
               
               Cow position:chr16:13306737-13306890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):106, 139

               
               
               Conread position:224-372
               
               
               Cow position:chr16:29557490-29557649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr16:50289285-50289133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:224-372
               
               
               Cow position:chr16:51112747-51112897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:225-348
               
               
               Cow position:chr16:33357259-33357379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:225-370
               
               
               Cow position:chr16:14242501-14242354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:225-372
               
               
               Cow position:chr16:8076368-8076521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr16:56796532-56796685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr16:31117482-31117584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-371
               
               
               Cow position:chr16:44210425-44210576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:226-372
               
               
               Cow position:chr16:9958963-9958810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr16:11083130-11082979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):101, 62

               
               
               Conread position:226-372
               
               
               Cow position:chr16:13531940-13531794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:226-372
               
               
               Cow position:chr16:14685257-14685412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr16:45785870-45785718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:227-338
               
               
               Cow position:chr16:46552923-46552815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:227-348
               
               
               Cow position:chr16:18156282-18156161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-352
               
               
               Cow position:chr16:38355297-38355425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr16:22329293-22329142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr16:29038046-29037900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:227-372
               
               
               Cow position:chr16:37452482-37452633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:227-373
               
               
               Cow position:chr16:5382315-5382158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr16:35623119-35623279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:228-359
               
               
               Cow position:chr16:34412939-34412803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr16:13689797-13689650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr16:820385-820231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr16:18206089-18205941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:228-372
               
               
               Cow position:chr16:22984884-22984737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):92, 119

               
               
               Conread position:228-372
               
               
               Cow position:chr16:29159251-29159105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr16:29886050-29886202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr16:17283575-17283427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:229-372
               
               
               Cow position:chr16:25380365-25380515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr16:39165368-39165221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:229-372
               
               
               Cow position:chr16:48086740-48086887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:230-365
               
               
               Cow position:chr16:32893758-32893616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:230-365
               
               
               Cow position:chr16:34220315-34220174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr16:39202268-39202121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:232-372
               
               
               Cow position:chr16:30358936-30359082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:233-362
               
               
               Cow position:chr16:9836648-9836782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:233-372
               
               
               Cow position:chr16:17982017-17982156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:233-372
               
               
               Cow position:chr16:48385278-48385418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:233-372
               
               
               Cow position:chr16:50931398-50931537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:233-634
               
               
               Cow position:chr16:13252184-13252577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 234

               
               
               Conread position:234-348
               
               
               Cow position:chr16:51382498-51382613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-371
               
               
               Cow position:chr16:12939745-12939601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 141

               
               
               Conread position:234-372
               
               
               Cow position:chr16:9578367-9578510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:234-372
               
               
               Cow position:chr16:11359275-11359132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:234-372
               
               
               Cow position:chr16:12077362-12077498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):119, 95

               
               
               Conread position:234-372
               
               
               Cow position:chr16:21317468-21317612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr16:42241993-42242136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:234-372
               
               
               Cow position:chr16:53508859-53509003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr16:54664674-54664819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:234-389
               
               
               Cow position:chr16:56665701-56665538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:235-328
               
               
               Cow position:chr16:4102707-4102800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr16:8322860-8323001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:235-372
               
               
               Cow position:chr16:19670229-19670372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr16:22773102-22772960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:235-372
               
               
               Cow position:chr16:28395957-28396100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr16:30036869-30037006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:236-372
               
               
               Cow position:chr16:41530177-41530319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:236-372
               
               
               Cow position:chr16:51697208-51697064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:236-376
               
               
               Cow position:chr16:23472870-23472726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:237-369
               
               
               Cow position:chr16:20476657-20476519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr16:29655446-29655306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:238-376
               
               
               Cow position:chr16:8025734-8025878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:240-371
               
               
               Cow position:chr16:589597-589728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):110, 74

               
               
               Conread position:240-372
               
               
               Cow position:chr16:42340315-42340177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr16:44429002-44428864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr16:54226481-54226616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-371
               
               
               Cow position:chr16:14974430-14974558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr16:42432997-42433130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:246-372
               
               
               Cow position:chr16:7496368-7496238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:247-374
               
               
               Cow position:chr16:50667403-50667270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:248-372
               
               
               Cow position:chr16:27160753-27160883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:95-371
               
               
               Cow position:chr17:8108061-8108332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):247, 16

               
               
               Conread position:160-328
               
               
               Cow position:chr17:1410003-1410167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 32

               
               
               Conread position:160-328
               
               
               Cow position:chr17:33657837-33657997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:160-348
               
               
               Cow position:chr17:25159607-25159797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):69, 109

               
               
               Conread position:161-372
               
               
               Cow position:chr17:2662662-2662445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 63

               
               
               Conread position:162-370
               
               
               Cow position:chr17:7577858-7577620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:173-372
               
               
               Cow position:chr17:12342262-12342460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):152, 20

               
               
               Conread position:176-359
               
               
               Cow position:chr17:25141760-25141585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):171, 21

               
               
               Conread position:176-372
               
               
               Cow position:chr17:23883049-23883247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:181-328
               
               
               Cow position:chr17:24587844-24587695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:191-347
               
               
               Cow position:chr17:21680988-21680830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:191-370
               
               
               Cow position:chr17:40288795-40288977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):133, 43

               
               
               Conread position:191-372
               
               
               Cow position:chr17:20904893-20905078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):5, 26

               
               
               Conread position:192-328
               
               
               Cow position:chr17:21206296-21206432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:192-366
               
               
               Cow position:chr17:5743084-5743264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr17:9117849-9117665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):137, 61

               
               
               Conread position:192-372
               
               
               Cow position:chr17:25718311-25718124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:193-342
               
               
               Cow position:chr17:39768247-39768098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-370
               
               
               Cow position:chr17:6849002-6848820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:194-329
               
               
               Cow position:chr17:10510267-10510402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-370
               
               
               Cow position:chr17:39715362-39715183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:195-348
               
               
               Cow position:chr17:11985672-11985831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:196-345
               
               
               Cow position:chr17:21655649-21655495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:196-365
               
               
               Cow position:chr17:21335489-21335664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):5, 55

               
               
               Conread position:196-370
               
               
               Cow position:chr17:32273482-32273665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 8

               
               
               Conread position:197-330
               
               
               Cow position:chr17:15215885-15216018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-326
               
               
               Cow position:chr17:25467601-25467473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):53, 64

               
               
               Conread position:198-347
               
               
               Cow position:chr17:969084-968934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):132, 113

               
               
               Conread position:198-371
               
               
               Cow position:chr17:37430306-37430483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:201-361
               
               
               Cow position:chr17:10508236-10508402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:203-328
               
               
               Cow position:chr17:9713146-9713271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 62

               
               
               Conread position:204-330
               
               
               Cow position:chr17:9487491-9487362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:204-364
               
               
               Cow position:chr17:15702546-15702385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):118, 41

               
               
               Conread position:205-363
               
               
               Cow position:chr17:24163230-24163070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:206-377
               
               
               Cow position:chr17:27613414-27613243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):17, 133

               
               
               Conread position:207-372
               
               
               Cow position:chr17:15684703-15684530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:208-370
               
               
               Cow position:chr17:23702815-23702646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:208-372
               
               
               Cow position:chr17:22056837-22057007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr17:22074309-22074477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 25

               
               
               Conread position:209-331
               
               
               Cow position:chr17:27524892-27524770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:209-369
               
               
               Cow position:chr17:24554187-24554020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr17:15340563-15340681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr17:25490872-25490990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr17:35541981-35542099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-340
               
               
               Cow position:chr17:20856351-20856486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:210-348
               
               
               Cow position:chr17:4286232-4286093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-348
               
               
               Cow position:chr17:21359214-21359072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 88

               
               
               Conread position:210-365
               
               
               Cow position:chr17:7137176-7137007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:210-367
               
               
               Cow position:chr17:32553865-32554021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 78

               
               
               Conread position:210-372
               
               
               Cow position:chr17:4213933-4213763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr17:5720061-5719892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr17:8544494-8544325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:210-372
               
               
               Cow position:chr17:17410482-17410314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr17:21788471-21788638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:210-372
               
               
               Cow position:chr17:28814303-28814472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr17:38833232-38833062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:211-323
               
               
               Cow position:chr17:5685928-5686039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:211-326
               
               
               Cow position:chr17:1364785-1364669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:211-328
               
               
               Cow position:chr17:3097468-3097585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):61, 56

               
               
               Conread position:211-369
               
               
               Cow position:chr17:8823500-8823336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr17:7698235-7698072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 96

               
               
               Conread position:211-372
               
               
               Cow position:chr17:18882696-18882522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr17:20874583-20874419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):114, 39

               
               
               Conread position:212-319
               
               
               Cow position:chr17:21372680-21372572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:212-370
               
               
               Cow position:chr17:5900556-5900392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr17:7590276-7590442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr17:8079499-8079333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr17:21922448-21922613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:213-372
               
               
               Cow position:chr17:11280914-11281081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr17:31585603-31585433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 42

               
               
               Conread position:213-396
               
               
               Cow position:chr17:25193341-25193533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr17:18766810-18766923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:214-368
               
               
               Cow position:chr17:5422883-5423044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr17:26231139-26230975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:215-369
               
               
               Cow position:chr17:6566659-6566504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 13

               
               
               Conread position:215-372
               
               
               Cow position:chr17:1463147-1463309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):114, 156

               
               
               Conread position:215-372
               
               
               Cow position:chr17:7571287-7571124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr17:11215047-11215209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:216-328
               
               
               Cow position:chr17:30737626-30737514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-328
               
               
               Cow position:chr17:32138242-32138353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:216-329
               
               
               Cow position:chr17:30728685-30728574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:216-331
               
               
               Cow position:chr17:21335382-21335496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:216-333
               
               
               Cow position:chr17:9260429-9260546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-354
               
               
               Cow position:chr17:19899074-19898931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:216-372
               
               
               Cow position:chr17:10431792-10431957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:216-372
               
               
               Cow position:chr17:21292865-21293021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:216-372
               
               
               Cow position:chr17:21738691-21738853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:217-348
               
               
               Cow position:chr17:27303787-27303921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:217-368
               
               
               Cow position:chr17:11224281-11224129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):133, 94

               
               
               Conread position:217-372
               
               
               Cow position:chr17:27202866-27203025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):105, 37

               
               
               Conread position:218-328
               
               
               Cow position:chr17:7810573-7810684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:218-348
               
               
               Cow position:chr17:5344798-5344664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:218-369
               
               
               Cow position:chr17:9940877-9940715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:218-369
               
               
               Cow position:chr17:21325513-21325356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr17:6936500-6936653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):131, 82

               
               
               Conread position:218-372
               
               
               Cow position:chr17:9854156-9854005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr17:31991113-31990954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 60

               
               
               Conread position:219-328
               
               
               Cow position:chr17:3387896-3387788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr17:25189467-25189310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:220-341
               
               
               Cow position:chr17:9078041-9078167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:220-365
               
               
               Cow position:chr17:32027273-32027425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:220-367
               
               
               Cow position:chr17:34751230-34751379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:220-371
               
               
               Cow position:chr17:21959509-21959666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr17:9935630-9935786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:220-372
               
               
               Cow position:chr17:20884702-20884544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr17:20992864-20993016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:220-372
               
               
               Cow position:chr17:22564363-22564209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:220-372
               
               
               Cow position:chr17:40741829-40741669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:221-326
               
               
               Cow position:chr17:16195775-16195670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:221-328
               
               
               Cow position:chr17:21298621-21298514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:221-349
               
               
               Cow position:chr17:10825658-10825526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:221-356
               
               
               Cow position:chr17:10803054-10802918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:221-370
               
               
               Cow position:chr17:36275511-36275355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr17:22128100-22127943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr17:11920988-11921094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:222-328
               
               
               Cow position:chr17:21236699-21236593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr17:21363559-21363452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:222-346
               
               
               Cow position:chr17:26225202-26225076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:222-347
               
               
               Cow position:chr17:6787114-6786984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:222-350
               
               
               Cow position:chr17:34948811-34948683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-364
               
               
               Cow position:chr17:11618761-11618617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:222-368
               
               
               Cow position:chr17:20932507-20932356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:222-371
               
               
               Cow position:chr17:14025733-14025889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr17:20929418-20929263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:2810809-2810649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:5349947-5350102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:9509819-9509973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:9746688-9746537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:222-372
               
               
               Cow position:chr17:9770679-9770533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr17:15355108-15354952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:15376767-15376621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:18673863-18674008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:21806275-21806431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:25467159-25467008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 123

               
               
               Conread position:222-372
               
               
               Cow position:chr17:25930363-25930518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 58

               
               
               Conread position:222-372
               
               
               Cow position:chr17:30665446-30665293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:222-372
               
               
               Cow position:chr17:37129386-37129220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:37816018-37816172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 46

               
               
               Conread position:222-372
               
               
               Cow position:chr17:40355435-40355279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr17:40673547-40673391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:223-370
               
               
               Cow position:chr17:5012897-5013052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:223-372
               
               
               Cow position:chr17:11215718-11215867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:223-372
               
               
               Cow position:chr17:43957836-43957681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:224-369
               
               
               Cow position:chr17:40772004-40771860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr17:5012013-5011859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr17:24883396-24883550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr17:36791301-36791157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-373
               
               
               Cow position:chr17:27292282-27292437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:225-328
               
               
               Cow position:chr17:25122070-25122173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-369
               
               
               Cow position:chr17:1634316-1634468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:225-371
               
               
               Cow position:chr17:21489448-21489601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr17:31856845-31856694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):100, 43

               
               
               Conread position:225-372
               
               
               Cow position:chr17:32349240-32349092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:226-328
               
               
               Cow position:chr17:32989649-32989547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr17:32993451-32993553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-365
               
               
               Cow position:chr17:21039730-21039585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:226-366
               
               
               Cow position:chr17:9824841-9824696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 25

               
               
               Conread position:226-372
               
               
               Cow position:chr17:14033469-14033619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr17:27440347-27440197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:227-328
               
               
               Cow position:chr17:12325593-12325694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-371
               
               
               Cow position:chr17:33275578-33275726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:227-374
               
               
               Cow position:chr17:30359629-30359489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:228-344
               
               
               Cow position:chr17:7554093-7554209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-351
               
               
               Cow position:chr17:35457644-35457768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:228-358
               
               
               Cow position:chr17:24077572-24077438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr17:17035122-17034973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:228-370
               
               
               Cow position:chr17:11831944-11832092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr17:26789590-26789446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 122

               
               
               Conread position:228-372
               
               
               Cow position:chr17:9911928-9911781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 118

               
               
               Conread position:228-372
               
               
               Cow position:chr17:17180214-17180070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 101

               
               
               Conread position:228-372
               
               
               Cow position:chr17:29472637-29472488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr17:43717163-43717306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:229-330
               
               
               Cow position:chr17:10650282-10650182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:229-348
               
               
               Cow position:chr17:42346849-42346972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr17:24862628-24862479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:231-328
               
               
               Cow position:chr17:22139748-22139651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:81
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr17:27048321-27048177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):94, 79

               
               
               Conread position:234-328
               
               
               Cow position:chr17:18776021-18776116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:234-333
               
               
               Cow position:chr17:5895769-5895868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr17:1469540-1469400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:234-372
               
               
               Cow position:chr17:27429730-27429600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr17:36864795-36864651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:235-334
               
               
               Cow position:chr17:1356206-1356107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-346
               
               
               Cow position:chr17:24111438-24111552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:235-348
               
               
               Cow position:chr17:20234375-20234258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:235-352
               
               
               Cow position:chr17:11148264-11148146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:235-368
               
               
               Cow position:chr17:25097618-25097487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr17:25126513-25126371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:235-372
               
               
               Cow position:chr17:29245607-29245464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-388
               
               
               Cow position:chr17:2275634-2275474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr17:950135-949996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr17:6004961-6004824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:236-372
               
               
               Cow position:chr17:30718255-30718397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr17:34836334-34836192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr17:38263326-38263469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:236-389
               
               
               Cow position:chr17:16158652-16158495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:237-371
               
               
               Cow position:chr17:20848684-20848545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:239-437
               
               
               Cow position:chr17:25032322-25032525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):91, 157

               
               
               Conread position:240-372
               
               
               Cow position:chr17:29356081-29356219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr17:39857544-39857411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:241-372
               
               
               Cow position:chr17:1562629-1562759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 96

               
               
               Conread position:241-372
               
               
               Cow position:chr17:21495529-21495399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:242-372
               
               
               Cow position:chr17:35334252-35334116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr17:41030094-41029972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr17:28468276-28468149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 71

               
               
               Conread position:255-371
               
               
               Cow position:chr17:12288939-12288817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:136-346
               
               
               Cow position:chr18:52862823-52862611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:159-369
               
               
               Cow position:chr18:49324267-49324483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:160-310
               
               
               Cow position:chr18:30570334-30570487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:160-326
               
               
               Cow position:chr18:53751938-53751778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 28

               
               
               Conread position:160-347
               
               
               Cow position:chr18:49982891-49982704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):167, 73

               
               
               Conread position:160-372
               
               
               Cow position:chr18:56190797-56191014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 43

               
               
               Conread position:160-389
               
               
               Cow position:chr18:35012162-35012387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):170, 29

               
               
               Conread position:161-372
               
               
               Cow position:chr18:12273822-12273605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:162-372
               
               
               Cow position:chr18:24529725-24529922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):158, 14

               
               
               Conread position:163-372
               
               
               Cow position:chr18:21266662-21266453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:167-346
               
               
               Cow position:chr18:51190441-51190621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):89, 65

               
               
               Conread position:175-372
               
               
               Cow position:chr18:38757686-38757891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:176-372
               
               
               Cow position:chr18:25984428-25984623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):153, 85

               
               
               Conread position:176-372
               
               
               Cow position:chr18:28923698-28923900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:176-372
               
               
               Cow position:chr18:43020261-43020455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):153, 31

               
               
               Conread position:177-372
               
               
               Cow position:chr18:21102625-21102825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 158

               
               
               Conread position:179-372
               
               
               Cow position:chr18:4872209-4872019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):173, 100

               
               
               Conread position:181-364
               
               
               Cow position:chr18:47966789-47966968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):168, 21

               
               
               Conread position:182-369
               
               
               Cow position:chr18:36201478-36201674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:185-334
               
               
               Cow position:chr18:33607099-33606953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:185-365
               
               
               Cow position:chr18:9177037-9176857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:189-372
               
               
               Cow position:chr18:6399498-6399685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:193-371
               
               
               Cow position:chr18:39434957-39434775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 87

               
               
               Conread position:193-372
               
               
               Cow position:chr18:19788111-19787926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 29

               
               
               Conread position:193-372
               
               
               Cow position:chr18:22214622-22214435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:194-327
               
               
               Cow position:chr18:35077382-35077248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 59

               
               
               Conread position:194-372
               
               
               Cow position:chr18:19272965-19273149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:196-328
               
               
               Cow position:chr18:11262965-11262834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:196-372
               
               
               Cow position:chr18:4495756-4495939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:197-331
               
               
               Cow position:chr18:42165422-42165555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:198-322
               
               
               Cow position:chr18:25647120-25647248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:198-372
               
               
               Cow position:chr18:39022383-39022203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 55

               
               
               Conread position:199-372
               
               
               Cow position:chr18:48828649-48828827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:202-322
               
               
               Cow position:chr18:39190371-39190493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):87, 73

               
               
               Conread position:203-372
               
               
               Cow position:chr18:4673424-4673255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):147, 42

               
               
               Conread position:204-369
               
               
               Cow position:chr18:4757451-4757620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):125, 50

               
               
               Conread position:206-328
               
               
               Cow position:chr18:4796476-4796354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:206-328
               
               
               Cow position:chr18:18844134-18844014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:207-364
               
               
               Cow position:chr18:47963746-47963580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:207-373
               
               
               Cow position:chr18:14172091-14172261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:208-327
               
               
               Cow position:chr18:47806169-47806286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:208-329
               
               
               Cow position:chr18:35786174-35786052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:208-372
               
               
               Cow position:chr18:5701366-5701196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:210-309
               
               
               Cow position:chr18:8390305-8390206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-326
               
               
               Cow position:chr18:23921587-23921703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-326
               
               
               Cow position:chr18:52245322-52245206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):112, 104

               
               
               Conread position:210-328
               
               
               Cow position:chr18:11672157-11672040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:210-333
               
               
               Cow position:chr18:2940829-2940954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):49, 60

               
               
               Conread position:210-360
               
               
               Cow position:chr18:45985511-45985666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 40

               
               
               Conread position:210-371
               
               
               Cow position:chr18:24342957-24342791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:210-371
               
               
               Cow position:chr18:35888987-35889147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:210-372
               
               
               Cow position:chr18:7359858-7359692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):114, 7

               
               
               Conread position:210-372
               
               
               Cow position:chr18:19896332-19896504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr18:23162996-23162840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:210-372
               
               
               Cow position:chr18:35692971-35692803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:210-372
               
               
               Cow position:chr18:37023437-37023603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):118, 13

               
               
               Conread position:210-372
               
               
               Cow position:chr18:46072578-46072410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr18:51212951-51212789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):140, 45

               
               
               Conread position:210-372
               
               
               Cow position:chr18:51392528-51392692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:211-328
               
               
               Cow position:chr18:42978531-42978648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr18:19883647-19883479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:211-405
               
               
               Cow position:chr18:36459049-36458848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:212-341
               
               
               Cow position:chr18:18320447-18320576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-350
               
               
               Cow position:chr18:23027058-23027194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr18:27388696-27388531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):112, 67

               
               
               Conread position:213-372
               
               
               Cow position:chr18:27109177-27109345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr18:43555410-43555577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:214-369
               
               
               Cow position:chr18:1954478-1954639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:214-371
               
               
               Cow position:chr18:10656549-10656386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:214-372
               
               
               Cow position:chr18:18369251-18369412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 49

               
               
               Conread position:214-372
               
               
               Cow position:chr18:42747698-42747539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):134, 31

               
               
               Conread position:215-319
               
               
               Cow position:chr18:35454557-35454663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:215-328
               
               
               Cow position:chr18:39875150-39875262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:215-328
               
               
               Cow position:chr18:52414077-52413964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-373
               
               
               Cow position:chr18:21768723-21768565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:216-348
               
               
               Cow position:chr18:3097925-3098059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:216-348
               
               
               Cow position:chr18:4489801-4489935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 18

               
               
               Conread position:216-369
               
               
               Cow position:chr18:33883889-33883734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:216-369
               
               
               Cow position:chr18:52649239-52649397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:216-372
               
               
               Cow position:chr18:50974185-50974347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:216-372
               
               
               Cow position:chr18:56183400-56183556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:217-343
               
               
               Cow position:chr18:50612423-50612553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr18:4556063-4556219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:218-328
               
               
               Cow position:chr18:19962038-19962147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:218-369
               
               
               Cow position:chr18:49841384-49841232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:218-372
               
               
               Cow position:chr18:24508124-24508289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:219-328
               
               
               Cow position:chr18:2773286-2773395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-347
               
               
               Cow position:chr18:41702941-41702811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:219-350
               
               
               Cow position:chr18:55123351-55123222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr18:16997360-16997201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:219-389
               
               
               Cow position:chr18:4624044-4624217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):106, 132

               
               
               Conread position:220-365
               
               
               Cow position:chr18:24266303-24266453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:220-369
               
               
               Cow position:chr18:17390889-17391043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):110, 87

               
               
               Conread position:221-370
               
               
               Cow position:chr18:19868157-19868309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr18:23446959-23447064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:222-334
               
               
               Cow position:chr18:22045311-22045422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:222-360
               
               
               Cow position:chr18:23821729-23821870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-365
               
               
               Cow position:chr18:10051849-10051702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 47

               
               
               Conread position:222-369
               
               
               Cow position:chr18:35874181-35874030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr18:2774036-2774191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr18:3211980-3211825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:222-372
               
               
               Cow position:chr18:4757930-4758085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr18:6818560-6818717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:222-372
               
               
               Cow position:chr18:7481251-7481100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:222-372
               
               
               Cow position:chr18:11754233-11754080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):103, 146

               
               
               Conread position:222-372
               
               
               Cow position:chr18:21782789-21782638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:222-372
               
               
               Cow position:chr18:26586512-26586657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr18:39623904-39623747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr18:47417100-47416949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 67

               
               
               Conread position:222-372
               
               
               Cow position:chr18:47835927-47835772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 87

               
               
               Conread position:222-372
               
               
               Cow position:chr18:48962039-48961881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr18:52251754-52251910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-437
               
               
               Cow position:chr18:55692919-55692691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 223

               
               
               Conread position:223-372
               
               
               Cow position:chr18:5078672-5078826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):102, 43

               
               
               Conread position:223-372
               
               
               Cow position:chr18:21192313-21192464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:223-372
               
               
               Cow position:chr18:22120783-22120938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:224-328
               
               
               Cow position:chr18:49602942-49603046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-348
               
               
               Cow position:chr18:45185973-45185845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:224-365
               
               
               Cow position:chr18:44917858-44917711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-369
               
               
               Cow position:chr18:49015218-49015079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:224-371
               
               
               Cow position:chr18:46048853-46048700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr18:247594-247742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 100

               
               
               Conread position:225-374
               
               
               Cow position:chr18:19433862-19433709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):102, 44

               
               
               Conread position:226-367
               
               
               Cow position:chr18:55499170-55499024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 68

               
               
               Conread position:226-372
               
               
               Cow position:chr18:1931359-1931507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr18:4066417-4066273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:226-372
               
               
               Cow position:chr18:4851384-4851530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 141

               
               
               Conread position:226-372
               
               
               Cow position:chr18:11867438-11867284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:226-372
               
               
               Cow position:chr18:12584740-12584894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr18:46647063-46647209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):124, 8

               
               
               Conread position:227-372
               
               
               Cow position:chr18:40047403-40047551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:228-365
               
               
               Cow position:chr18:49038559-49038416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr18:42427717-42427568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr18:5632365-5632215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr18:12059094-12058950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):94, 109

               
               
               Conread position:228-372
               
               
               Cow position:chr18:51643269-51643418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 43

               
               
               Conread position:228-373
               
               
               Cow position:chr18:28657814-28657965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 40

               
               
               Conread position:228-420
               
               
               Cow position:chr18:24759559-24759756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 164

               
               
               Conread position:229-372
               
               
               Cow position:chr18:52855152-52855002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:229-375
               
               
               Cow position:chr18:2765345-2765197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):93, 131

               
               
               Conread position:234-368
               
               
               Cow position:chr18:47410634-47410494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-369
               
               
               Cow position:chr18:20641405-20641546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-370
               
               
               Cow position:chr18:44262721-44262580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:234-371
               
               
               Cow position:chr18:5766504-5766361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:234-371
               
               
               Cow position:chr18:25282464-25282605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:234-371
               
               
               Cow position:chr18:45558239-45558095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr18:912015-912156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr18:4203839-4203981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:234-372
               
               
               Cow position:chr18:17005352-17005207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr18:20174040-20174182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:234-372
               
               
               Cow position:chr18:22170709-22170565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr18:33157906-33157766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:234-372
               
               
               Cow position:chr18:48242283-48242137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr18:50359423-50359279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr18:51655950-51656095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr18:51691370-51691515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr18:51867456-51867602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr18:56044645-56044504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:234-374
               
               
               Cow position:chr18:4466895-4467045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:235-328
               
               
               Cow position:chr18:8170996-8171088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:235-356
               
               
               Cow position:chr18:5462600-5462716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:235-368
               
               
               Cow position:chr18:1571147-1571284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-369
               
               
               Cow position:chr18:38687170-38687034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 110

               
               
               Conread position:235-372
               
               
               Cow position:chr18:51192650-51192793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:235-373
               
               
               Cow position:chr18:18918870-18919012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:236-372
               
               
               Cow position:chr18:5647902-5647760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr18:24719402-24719260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr18:30586136-30586274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr18:56159550-56159409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 56

               
               
               Conread position:237-370
               
               
               Cow position:chr18:10322895-10322755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr18:5711565-5711703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr18:51850476-51850610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:240-371
               
               
               Cow position:chr18:30341099-30341232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr18:6609767-6609911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr18:26458264-26458402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:242-371
               
               
               Cow position:chr18:11657739-11657603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 69

               
               
               Conread position:242-372
               
               
               Cow position:chr18:56171931-56172063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:243-372
               
               
               Cow position:chr18:11377446-11377312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:245-369
               
               
               Cow position:chr18:35367115-35367242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr18:47525488-47525355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:254-372
               
               
               Cow position:chr18:47565895-47565774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 65

               
               
               Conread position:257-372
               
               
               Cow position:chr18:14888359-14888240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:270-372
               
               
               Cow position:chr18:31125173-31125277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:90-320
               
               
               Cow position:chr19:11754342-11754562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:160-343
               
               
               Cow position:chr19:29210891-29210698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:160-348
               
               
               Cow position:chr19:9733379-9733571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):74, 85

               
               
               Conread position:160-372
               
               
               Cow position:chr19:1948452-1948240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 46

               
               
               Conread position:161-301
               
               
               Cow position:chr19:43498741-43498876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:167-370
               
               
               Cow position:chr19:7675898-7676106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:167-372
               
               
               Cow position:chr19:7675416-7675203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:168-389
               
               
               Cow position:chr19:11424133-11424362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:176-372
               
               
               Cow position:chr19:55175314-55175505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 5

               
               
               Conread position:177-399
               
               
               Cow position:chr19:3217179-3216959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):153, 29

               
               
               Conread position:181-370
               
               
               Cow position:chr19:30886559-30886367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):149, 25

               
               
               Conread position:183-372
               
               
               Cow position:chr19:28135729-28135532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:191-320
               
               
               Cow position:chr19:33117008-33116879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:191-371
               
               
               Cow position:chr19:33237327-33237144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:192-372
               
               
               Cow position:chr19:33241348-33241537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:193-328
               
               
               Cow position:chr19:25696083-25696211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:194-371
               
               
               Cow position:chr19:2207641-2207815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):152, 12

               
               
               Conread position:194-371
               
               
               Cow position:chr19:48475280-48475102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):149, 32

               
               
               Conread position:194-372
               
               
               Cow position:chr19:10114484-10114661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):156, 40

               
               
               Conread position:195-371
               
               
               Cow position:chr19:4800895-4800712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:196-337
               
               
               Cow position:chr19:48939649-48939504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:198-311
               
               
               Cow position:chr19:33702205-33702318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-372
               
               
               Cow position:chr19:19919312-19919492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:198-372
               
               
               Cow position:chr19:35233513-35233684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):126, 36

               
               
               Conread position:198-372
               
               
               Cow position:chr19:43202841-43203020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 68

               
               
               Conread position:204-353
               
               
               Cow position:chr19:21538206-21538056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 64

               
               
               Conread position:206-372
               
               
               Cow position:chr19:54915553-54915723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:208-369
               
               
               Cow position:chr19:25763249-25763086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:209-372
               
               
               Cow position:chr19:18921104-18921278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:210-329
               
               
               Cow position:chr19:20331700-20331818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:210-333
               
               
               Cow position:chr19:46919261-46919138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-369
               
               
               Cow position:chr19:4587601-4587766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr19:7404238-7404407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr19:13316284-13316449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:210-372
               
               
               Cow position:chr19:17273599-17273763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:210-372
               
               
               Cow position:chr19:22449795-22449957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:210-372
               
               
               Cow position:chr19:42236165-42235997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr19:43647555-43647382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr19:50682308-50682473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:210-415
               
               
               Cow position:chr19:17068994-17068783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 159

               
               
               Conread position:211-328
               
               
               Cow position:chr19:52621721-52621838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-330
               
               
               Cow position:chr19:2327295-2327416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:211-370
               
               
               Cow position:chr19:22134015-22134178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr19:16693896-16694063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:212-325
               
               
               Cow position:chr19:30536950-30537062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:212-326
               
               
               Cow position:chr19:17796031-17795917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-329
               
               
               Cow position:chr19:19668012-19667896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:212-369
               
               
               Cow position:chr19:18786187-18786349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:212-371
               
               
               Cow position:chr19:42763332-42763168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr19:53542766-53542923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):142, 22

               
               
               Conread position:213-327
               
               
               Cow position:chr19:21723580-21723688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr19:6079233-6079389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:214-328
               
               
               Cow position:chr19:14421805-14421917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr19:21199272-21199158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-340
               
               
               Cow position:chr19:8034217-8034343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-347
               
               
               Cow position:chr19:1553840-1553704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):116, 75

               
               
               Conread position:214-368
               
               
               Cow position:chr19:11866178-11866334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:214-370
               
               
               Cow position:chr19:12705708-12705867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:214-370
               
               
               Cow position:chr19:34757870-34758031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):116, 10

               
               
               Conread position:215-347
               
               
               Cow position:chr19:38625099-38624968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:215-348
               
               
               Cow position:chr19:2042216-2042084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:215-348
               
               
               Cow position:chr19:55724271-55724408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:215-357
               
               
               Cow position:chr19:38717208-38717364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:215-371
               
               
               Cow position:chr19:10242709-10242553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:215-372
               
               
               Cow position:chr19:43373171-43373008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:216-324
               
               
               Cow position:chr19:21309780-21309673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:216-328
               
               
               Cow position:chr19:7147934-7148044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:216-328
               
               
               Cow position:chr19:18344413-18344524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:216-328
               
               
               Cow position:chr19:21378338-21378450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-348
               
               
               Cow position:chr19:39585982-39586111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:216-353
               
               
               Cow position:chr19:39361275-39361136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:216-369
               
               
               Cow position:chr19:34619898-34620056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):113, 81

               
               
               Conread position:216-372
               
               
               Cow position:chr19:6344204-6344043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):100, 77

               
               
               Conread position:216-372
               
               
               Cow position:chr19:46094505-46094667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:216-389
               
               
               Cow position:chr19:32505986-32506168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:217-327
               
               
               Cow position:chr19:51637170-51637060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-328
               
               
               Cow position:chr19:33931728-33931839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:218-328
               
               
               Cow position:chr19:46300551-46300441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr19:1664061-1664221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr19:2223976-2224127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr19:2965671-2965511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:218-372
               
               
               Cow position:chr19:39648947-39649107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:220-328
               
               
               Cow position:chr19:40051266-40051374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-330
               
               
               Cow position:chr19:16870648-16870758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr19:15887193-15887351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr19:25382560-25382718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr19:39254318-39254476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr19:10081201-10081044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr19:11194636-11194793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:221-389
               
               
               Cow position:chr19:53243353-53243523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:222-325
               
               
               Cow position:chr19:4486025-4486128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-367
               
               
               Cow position:chr19:8185327-8185177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:222-367
               
               
               Cow position:chr19:30227645-30227494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr19:729623-729771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:222-370
               
               
               Cow position:chr19:12747650-12747803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr19:17354981-17354828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:222-371
               
               
               Cow position:chr19:34166491-34166341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:222-372
               
               
               Cow position:chr19:2220950-2221106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr19:6508981-6509124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:222-372
               
               
               Cow position:chr19:20622779-20622623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr19:21817088-21816936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr19:30007310-30007161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 46

               
               
               Conread position:222-372
               
               
               Cow position:chr19:36845375-36845219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr19:43560717-43560570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):120, 13

               
               
               Conread position:222-372
               
               
               Cow position:chr19:52750633-52750789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:223-311
               
               
               Cow position:chr19:19174642-19174554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr19:2577683-2577535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 101

               
               
               Conread position:223-372
               
               
               Cow position:chr19:43292178-43292020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:224-330
               
               
               Cow position:chr19:46822831-46822726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:224-341
               
               
               Cow position:chr19:33610012-33609895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-370
               
               
               Cow position:chr19:387259-387107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:224-370
               
               
               Cow position:chr19:4987644-4987793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr19:12698443-12698290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr19:39758644-39758493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 65

               
               
               Conread position:224-372
               
               
               Cow position:chr19:34608077-34608228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr19:37466939-37467092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 9

               
               
               Conread position:224-372
               
               
               Cow position:chr19:39384918-39385072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr19:41695539-41695692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:224-373
               
               
               Cow position:chr19:35246065-35245910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:224-386
               
               
               Cow position:chr19:24137391-24137223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:225-372
               
               
               Cow position:chr19:23222752-23222603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr19:26167791-26167943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):102, 29

               
               
               Conread position:226-328
               
               
               Cow position:chr19:22871134-22871236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-348
               
               
               Cow position:chr19:52356372-52356247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:226-352
               
               
               Cow position:chr19:14823377-14823252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:226-371
               
               
               Cow position:chr19:39781641-39781490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr19:15362575-15362731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:226-372
               
               
               Cow position:chr19:22816896-22817038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:226-373
               
               
               Cow position:chr19:49290336-49290486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr19:25526404-25526253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr19:30471234-30471385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:228-348
               
               
               Cow position:chr19:12601924-12601805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-348
               
               
               Cow position:chr19:14581481-14581358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr19:43413901-43413753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:228-372
               
               
               Cow position:chr19:13121164-13121305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr19:17868995-17869142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:228-372
               
               
               Cow position:chr19:22798959-22799108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:228-372
               
               
               Cow position:chr19:26975949-26976098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:228-372
               
               
               Cow position:chr19:47986979-47986828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:229-330
               
               
               Cow position:chr19:10554181-10554282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-368
               
               
               Cow position:chr19:6854164-6854306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:229-372
               
               
               Cow position:chr19:7637118-7637266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):98, 21

               
               
               Conread position:229-372
               
               
               Cow position:chr19:25807191-25807331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:230-370
               
               
               Cow position:chr19:24956125-24956266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:230-372
               
               
               Cow position:chr19:34819069-34819219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr19:41024341-41024193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr19:4503334-4503192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:233-371
               
               
               Cow position:chr19:28037793-28037936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:234-369
               
               
               Cow position:chr19:14348124-14347989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:234-369
               
               
               Cow position:chr19:26269121-26269256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 95

               
               
               Conread position:234-372
               
               
               Cow position:chr19:3870722-3870576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:234-372
               
               
               Cow position:chr19:21176628-21176772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:234-372
               
               
               Cow position:chr19:25410734-25410873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 109

               
               
               Conread position:234-372
               
               
               Cow position:chr19:33469134-33468990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr19:35322023-35322166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr19:39613052-39613196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 56

               
               
               Conread position:234-372
               
               
               Cow position:chr19:53378815-53378670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:235-348
               
               
               Cow position:chr19:29115855-29115741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:235-369
               
               
               Cow position:chr19:10930306-10930444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:235-372
               
               
               Cow position:chr19:11191508-11191647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr19:15092024-15092163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:236-329
               
               
               Cow position:chr19:38254229-38254136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:236-372
               
               
               Cow position:chr19:5406612-5406469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr19:22153740-22153876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):113, 8

               
               
               Conread position:237-372
               
               
               Cow position:chr19:25652649-25652787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:238-348
               
               
               Cow position:chr19:29958566-29958683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr19:7884687-7884549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr19:10970986-10971128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr19:23304381-23304519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:239-372
               
               
               Cow position:chr19:11443099-11442958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:240-348
               
               
               Cow position:chr19:6417716-6417608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr19:8128412-8128274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr19:31846445-31846581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:242-363
               
               
               Cow position:chr19:37560092-37560215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:248-365
               
               
               Cow position:chr19:30552116-30551993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:271-372
               
               
               Cow position:chr19:51400938-51401041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:116-372
               
               
               Cow position:chr2:62644830-62644568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):161, 17

               
               
               Conread position:160-311
               
               
               Cow position:chr2:67310923-67311075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:160-354
               
               
               Cow position:chr2:52656772-52656577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):40, 183

               
               
               Conread position:160-372
               
               
               Cow position:chr2:6697301-6697514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:160-372
               
               
               Cow position:chr2:77242072-77241848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):144, 28

               
               
               Conread position:160-372
               
               
               Cow position:chr2:79138442-79138232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:160-374
               
               
               Cow position:chr2:81758233-81758013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:161-298
               
               
               Cow position:chr2:81157806-81157665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:161-328
               
               
               Cow position:chr2:19030944-19031108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:161-345
               
               
               Cow position:chr2:41385706-41385881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):163, 30

               
               
               Conread position:161-372
               
               
               Cow position:chr2:13271219-13271437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:161-372
               
               
               Cow position:chr2:24726464-24726236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:175-328
               
               
               Cow position:chr2:42394576-42394425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:176-349
               
               
               Cow position:chr2:12186817-12186635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:177-372
               
               
               Cow position:chr2:12447412-12447616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:179-341
               
               
               Cow position:chr2:84928335-84928171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:181-387
               
               
               Cow position:chr2:66094818-66095028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:184-346
               
               
               Cow position:chr2:44032230-44032390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:184-389
               
               
               Cow position:chr2:34474118-34474332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:185-363
               
               
               Cow position:chr2:3438044-3438229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):106, 29

               
               
               Conread position:186-372
               
               
               Cow position:chr2:14626763-14626573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):144, 26

               
               
               Conread position:187-367
               
               
               Cow position:chr2:23981757-23981569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:187-372
               
               
               Cow position:chr2:57802320-57802508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):142, 25

               
               
               Conread position:190-372
               
               
               Cow position:chr2:29681997-29681819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):140, 22

               
               
               Conread position:191-330
               
               
               Cow position:chr2:39514201-39514064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:191-372
               
               
               Cow position:chr2:32416692-32416880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 77

               
               
               Conread position:191-372
               
               
               Cow position:chr2:81388857-81388674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:192-348
               
               
               Cow position:chr2:2689920-2689760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:192-348
               
               
               Cow position:chr2:44021908-44021749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:192-372
               
               
               Cow position:chr2:47104618-47104799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:192-372
               
               
               Cow position:chr2:48130786-48130600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):135, 53

               
               
               Conread position:193-328
               
               
               Cow position:chr2:39798408-39798273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-372
               
               
               Cow position:chr2:44081601-44081418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:194-372
               
               
               Cow position:chr2:19211891-19212074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:194-372
               
               
               Cow position:chr2:46733770-46733951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):136, 44

               
               
               Conread position:195-348
               
               
               Cow position:chr2:50778497-50778349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:196-371
               
               
               Cow position:chr2:24530533-24530350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:198-328
               
               
               Cow position:chr2:25597338-25597464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:198-341
               
               
               Cow position:chr2:46190389-46190244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:198-348
               
               
               Cow position:chr2:52398473-52398323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:199-369
               
               
               Cow position:chr2:44191642-44191464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:202-372
               
               
               Cow position:chr2:12051304-12051136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 10

               
               
               Conread position:203-347
               
               
               Cow position:chr2:82303813-82303671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):119, 7

               
               
               Conread position:205-328
               
               
               Cow position:chr2:68487854-68487975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:206-327
               
               
               Cow position:chr2:80838761-80838880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:206-372
               
               
               Cow position:chr2:53575549-53575375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:206-372
               
               
               Cow position:chr2:61421015-61421187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:207-307
               
               
               Cow position:chr2:39600658-39600759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:207-314
               
               
               Cow position:chr2:11617467-11617362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:207-370
               
               
               Cow position:chr2:56846901-56846731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr2:17328901-17328731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:208-364
               
               
               Cow position:chr2:50368123-50367960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 63

               
               
               Conread position:208-372
               
               
               Cow position:chr2:70674874-70674709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:208-372
               
               
               Cow position:chr2:70896184-70896015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:209-372
               
               
               Cow position:chr2:28710853-28711018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:209-372
               
               
               Cow position:chr2:46124551-46124719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:209-389
               
               
               Cow position:chr2:44482506-44482683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):141, 8

               
               
               Conread position:210-328
               
               
               Cow position:chr2:1638753-1638635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:210-328
               
               
               Cow position:chr2:24434131-24434249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr2:39369000-39368882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr2:76182409-76182526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:210-348
               
               
               Cow position:chr2:67942241-67942099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-348
               
               
               Cow position:chr2:72309862-72310004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-348
               
               
               Cow position:chr2:72407346-72407490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:210-361
               
               
               Cow position:chr2:7383540-7383696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:210-365
               
               
               Cow position:chr2:42927302-42927462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 57

               
               
               Conread position:210-365
               
               
               Cow position:chr2:45721118-45721279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:210-368
               
               
               Cow position:chr2:15377248-15377090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 50

               
               
               Conread position:210-370
               
               
               Cow position:chr2:60368465-60368299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-370
               
               
               Cow position:chr2:81927996-81927837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):140, 109

               
               
               Conread position:210-371
               
               
               Cow position:chr2:870206-870366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:210-372
               
               
               Cow position:chr2:11840771-11840611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 126

               
               
               Conread position:210-372
               
               
               Cow position:chr2:15229671-15229506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr2:20362506-20362672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr2:23147541-23147714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr2:30642514-30642682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr2:44216583-44216415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-389
               
               
               Cow position:chr2:16514925-16514747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):143, 30

               
               
               Conread position:211-341
               
               
               Cow position:chr2:75190811-75190681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):111, 97

               
               
               Conread position:211-370
               
               
               Cow position:chr2:47073334-47073177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr2:32402817-32402986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr2:39663516-39663358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr2:62861735-62861568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:211-372
               
               
               Cow position:chr2:64773532-64773366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:211-372
               
               
               Cow position:chr2:76562259-76562087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:212-326
               
               
               Cow position:chr2:61473954-61474066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:212-327
               
               
               Cow position:chr2:66629332-66629220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:212-328
               
               
               Cow position:chr2:83184305-83184185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:212-367
               
               
               Cow position:chr2:73353937-73353783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:212-371
               
               
               Cow position:chr2:20791289-20791451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:212-372
               
               
               Cow position:chr2:46019482-46019643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):104, 56

               
               
               Conread position:212-372
               
               
               Cow position:chr2:46383321-46383485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:213-365
               
               
               Cow position:chr2:38273695-38273538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:213-365
               
               
               Cow position:chr2:38647014-38647168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:213-369
               
               
               Cow position:chr2:53851582-53851421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:213-370
               
               
               Cow position:chr2:72183345-72183509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr2:39263633-39263471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr2:41711001-41710845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:213-372
               
               
               Cow position:chr2:58135246-58135411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr2:77282163-77282002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:213-385
               
               
               Cow position:chr2:777542-777713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:214-327
               
               
               Cow position:chr2:17942878-17942989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr2:37891349-37891460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:214-330
               
               
               Cow position:chr2:28322251-28322367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-364
               
               
               Cow position:chr2:46293906-46294057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:214-370
               
               
               Cow position:chr2:22042686-22042519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr2:45624159-45623995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr2:63718273-63718431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:215-328
               
               
               Cow position:chr2:21410364-21410250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr2:52466308-52466467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):49, 56

               
               
               Conread position:216-326
               
               
               Cow position:chr2:46110911-46111021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-328
               
               
               Cow position:chr2:38576335-38576449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:216-328
               
               
               Cow position:chr2:39525606-39525493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:216-328
               
               
               Cow position:chr2:78669786-78669894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:216-367
               
               
               Cow position:chr2:8821375-8821218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr2:27337636-27337793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr2:40728491-40728331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):113, 18

               
               
               Conread position:216-372
               
               
               Cow position:chr2:60260848-60261011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:216-389
               
               
               Cow position:chr2:64131563-64131386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 130

               
               
               Conread position:216-424
               
               
               Cow position:chr2:85496192-85496402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):134, 206

               
               
               Conread position:217-355
               
               
               Cow position:chr2:26361899-26361754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:217-366
               
               
               Cow position:chr2:16505336-16505489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:217-370
               
               
               Cow position:chr2:7194350-7194194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:217-370
               
               
               Cow position:chr2:26438583-26438741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:217-371
               
               
               Cow position:chr2:29734961-29734807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):115, 51

               
               
               Conread position:217-372
               
               
               Cow position:chr2:39544658-39544820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr2:44025519-44025361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr2:50913874-50914031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr2:70781233-70781075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr2:80275152-80275312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:218-343
               
               
               Cow position:chr2:51825110-51824984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:218-359
               
               
               Cow position:chr2:39418948-39419096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 44

               
               
               Conread position:218-370
               
               
               Cow position:chr2:67480116-67479957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr2:22840065-22840222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr2:26805976-26806132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr2:30954457-30954615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:218-372
               
               
               Cow position:chr2:45510417-45510578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr2:54883605-54883457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:219-334
               
               
               Cow position:chr2:5815879-5815994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-355
               
               
               Cow position:chr2:2437470-2437603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 71

               
               
               Conread position:219-372
               
               
               Cow position:chr2:6901916-6901759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr2:36017274-36017428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr2:52596593-52596744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:219-372
               
               
               Cow position:chr2:67386334-67386496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:219-373
               
               
               Cow position:chr2:28303459-28303299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:220-328
               
               
               Cow position:chr2:46202401-46202293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 46

               
               
               Conread position:220-347
               
               
               Cow position:chr2:39363141-39363010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 47

               
               
               Conread position:220-348
               
               
               Cow position:chr2:46300750-46300620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:220-348
               
               
               Cow position:chr2:46346692-46346824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:220-351
               
               
               Cow position:chr2:39642888-39642754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):104, 25

               
               
               Conread position:220-372
               
               
               Cow position:chr2:5130312-5130473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:220-372
               
               
               Cow position:chr2:15219252-15219094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:220-393
               
               
               Cow position:chr2:18621555-18621375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:221-345
               
               
               Cow position:chr2:37652386-37652258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:221-369
               
               
               Cow position:chr2:45542261-45542415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr2:7523994-7524151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr2:22370810-22370962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:221-372
               
               
               Cow position:chr2:40402889-40403046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr2:43990911-43990753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr2:54931702-54931808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr2:78256426-78256321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:222-348
               
               
               Cow position:chr2:11217930-11217799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:222-348
               
               
               Cow position:chr2:64473215-64473342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:222-353
               
               
               Cow position:chr2:49931964-49931836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:222-359
               
               
               Cow position:chr2:29394872-29395015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:222-360
               
               
               Cow position:chr2:46053607-46053463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-364
               
               
               Cow position:chr2:16669604-16669457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:222-365
               
               
               Cow position:chr2:72528096-72527948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:222-367
               
               
               Cow position:chr2:1335558-1335709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr2:16847318-16847168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr2:44198014-44197864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:222-372
               
               
               Cow position:chr2:2827878-2827724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):105, 46

               
               
               Conread position:222-372
               
               
               Cow position:chr2:6039149-6038994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr2:13369791-13369635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr2:14826413-14826257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:222-372
               
               
               Cow position:chr2:17940151-17940306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):99, 121

               
               
               Conread position:222-372
               
               
               Cow position:chr2:21382715-21382869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr2:24722134-24722290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr2:32048618-32048461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr2:32660314-32660158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr2:36963659-36963508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:222-372
               
               
               Cow position:chr2:38837380-38837536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr2:39095491-39095337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:222-372
               
               
               Cow position:chr2:41040573-41040725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 120

               
               
               Conread position:222-372
               
               
               Cow position:chr2:44022669-44022825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr2:49716952-49717107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):106, 52

               
               
               Conread position:222-372
               
               
               Cow position:chr2:54968143-54967989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:222-372
               
               
               Cow position:chr2:57776484-57776328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr2:58057195-58057045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:222-372
               
               
               Cow position:chr2:59396917-59397072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):103, 84

               
               
               Conread position:222-372
               
               
               Cow position:chr2:69579542-69579699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr2:80116231-80116080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 41

               
               
               Conread position:222-374
               
               
               Cow position:chr2:46014903-46014745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-374
               
               
               Cow position:chr2:46317007-46316853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):110, 150

               
               
               Conread position:223-371
               
               
               Cow position:chr2:43596018-43596174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:223-372
               
               
               Cow position:chr2:69109213-69109368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:224-327
               
               
               Cow position:chr2:68328718-68328821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-328
               
               
               Cow position:chr2:21950108-21950006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:224-331
               
               
               Cow position:chr2:16409607-16409500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-345
               
               
               Cow position:chr2:37224204-37224085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:224-356
               
               
               Cow position:chr2:44313584-44313716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):118, 124

               
               
               Conread position:224-363
               
               
               Cow position:chr2:55496159-55496305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):20, 89

               
               
               Conread position:224-369
               
               
               Cow position:chr2:84480366-84480517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr2:9543445-9543295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr2:16889920-16890072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr2:21380270-21380417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):126, 18

               
               
               Conread position:224-372
               
               
               Cow position:chr2:35988484-35988638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr2:39350357-39350512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:224-372
               
               
               Cow position:chr2:46051178-46051320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:224-372
               
               
               Cow position:chr2:54700591-54700437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr2:68870826-68870675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr2:69823726-69823570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:225-364
               
               
               Cow position:chr2:30351572-30351717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:225-371
               
               
               Cow position:chr2:42183506-42183354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:225-385
               
               
               Cow position:chr2:40410280-40410114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:226-325
               
               
               Cow position:chr2:64465643-64465742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-326
               
               
               Cow position:chr2:9476301-9476401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr2:81493468-81493568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:226-363
               
               
               Cow position:chr2:42608199-42608056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:226-366
               
               
               Cow position:chr2:46312573-46312427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:226-369
               
               
               Cow position:chr2:46052631-46052484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 25

               
               
               Conread position:226-371
               
               
               Cow position:chr2:12332663-12332512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:226-371
               
               
               Cow position:chr2:16428268-16428414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):124, 96

               
               
               Conread position:226-371
               
               
               Cow position:chr2:17492385-17492534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr2:19062302-19062155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 38

               
               
               Conread position:226-372
               
               
               Cow position:chr2:19137757-19137909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr2:21671648-21671499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 141

               
               
               Conread position:226-372
               
               
               Cow position:chr2:29860135-29859993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr2:37113065-37113208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:226-372
               
               
               Cow position:chr2:41007408-41007560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 9

               
               
               Conread position:226-372
               
               
               Cow position:chr2:81480979-81480831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:226-375
               
               
               Cow position:chr2:1709101-1708951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:227-369
               
               
               Cow position:chr2:40880200-40880055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr2:4445685-4445829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):119, 23

               
               
               Conread position:227-372
               
               
               Cow position:chr2:55632907-55632757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 70

               
               
               Conread position:228-329
               
               
               Cow position:chr2:46120511-46120612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-355
               
               
               Cow position:chr2:19164836-19164964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:228-365
               
               
               Cow position:chr2:17966898-17967039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr2:46130029-46130169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:228-369
               
               
               Cow position:chr2:46162088-46161941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:228-370
               
               
               Cow position:chr2:39584579-39584432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:228-371
               
               
               Cow position:chr2:41955016-41954868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 54

               
               
               Conread position:228-371
               
               
               Cow position:chr2:69419454-69419603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr2:4016717-4016860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 116

               
               
               Conread position:228-372
               
               
               Cow position:chr2:13582715-13582565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:228-372
               
               
               Cow position:chr2:40597700-40597559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):122, 88

               
               
               Conread position:228-372
               
               
               Cow position:chr2:46971256-46971103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr2:76110526-76110378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:229-362
               
               
               Cow position:chr2:74078983-74079114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 53

               
               
               Conread position:230-372
               
               
               Cow position:chr2:32488537-32488677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:230-373
               
               
               Cow position:chr2:21049201-21049347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:232-371
               
               
               Cow position:chr2:83410633-83410491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:233-328
               
               
               Cow position:chr2:53491323-53491420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:234-359
               
               
               Cow position:chr2:40058614-40058745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-369
               
               
               Cow position:chr2:63074730-63074868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:234-372
               
               
               Cow position:chr2:14709995-14710131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:234-372
               
               
               Cow position:chr2:14847980-14847847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:234-372
               
               
               Cow position:chr2:27173492-27173350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 63

               
               
               Conread position:234-372
               
               
               Cow position:chr2:39228935-39228797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):75, 85

               
               
               Conread position:234-372
               
               
               Cow position:chr2:63331677-63331823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr2:70908203-70908344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr2:71486903-71486759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr2:76861331-76861475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:235-370
               
               
               Cow position:chr2:40257288-40257429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr2:24593990-24593855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:235-372
               
               
               Cow position:chr2:45439558-45439420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:235-372
               
               
               Cow position:chr2:45478473-45478616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr2:80963525-80963665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:235-388
               
               
               Cow position:chr2:80770241-80770085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 143

               
               
               Conread position:236-347
               
               
               Cow position:chr2:5755174-5755284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr2:38658664-38658801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 104

               
               
               Conread position:236-372
               
               
               Cow position:chr2:53500912-53501054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:236-373
               
               
               Cow position:chr2:43123462-43123318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr2:13935829-13935690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr2:15298659-15298520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:237-372
               
               
               Cow position:chr2:65890504-65890641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr2:80177469-80177606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:238-372
               
               
               Cow position:chr2:16018111-16018251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr2:42255556-42255416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr2:45367414-45367281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):98, 86

               
               
               Conread position:239-351
               
               
               Cow position:chr2:73776514-73776625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr2:19502367-19502496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:242-369
               
               
               Cow position:chr2:73282457-73282580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr2:26102884-26102748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr2:51638668-51638531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:247-371
               
               
               Cow position:chr2:64213174-64213048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:248-371
               
               
               Cow position:chr2:30817079-30816952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:258-372
               
               
               Cow position:chr2:70945505-70945385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:160-327
               
               
               Cow position:chr20:32988588-32988757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:160-327
               
               
               Cow position:chr20:36023167-36023326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:160-328
               
               
               Cow position:chr20:26723448-26723605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr20:34777418-34777203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):169, 34

               
               
               Conread position:176-341
               
               
               Cow position:chr20:35211036-35211204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:177-372
               
               
               Cow position:chr20:13943983-13943788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:181-328
               
               
               Cow position:chr20:26059014-26059157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:184-370
               
               
               Cow position:chr20:14100218-14100408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:191-326
               
               
               Cow position:chr20:41274684-41274823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:191-372
               
               
               Cow position:chr20:17846167-17845984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:192-368
               
               
               Cow position:chr20:5636691-5636508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:192-370
               
               
               Cow position:chr20:7709571-7709756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr20:9537341-9537162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):158, 127

               
               
               Conread position:192-372
               
               
               Cow position:chr20:20056281-20056461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):135, 53

               
               
               Conread position:195-356
               
               
               Cow position:chr20:15846962-15846794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:196-328
               
               
               Cow position:chr20:37228880-37229011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:196-348
               
               
               Cow position:chr20:7622778-7622932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):131, 100

               
               
               Conread position:196-383
               
               
               Cow position:chr20:35591444-35591635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 187

               
               
               Conread position:199-328
               
               
               Cow position:chr20:15547392-15547263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:199-328
               
               
               Cow position:chr20:36203387-36203516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:199-340
               
               
               Cow position:chr20:13617427-13617283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:202-372
               
               
               Cow position:chr20:6603243-6603066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:205-360
               
               
               Cow position:chr20:19328584-19328423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:207-328
               
               
               Cow position:chr20:12334529-12334408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr20:28067227-28067396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 67

               
               
               Conread position:208-371
               
               
               Cow position:chr20:36634005-36633841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):135, 109

               
               
               Conread position:208-372
               
               
               Cow position:chr20:580727-580897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr20:11481942-11482111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):110, 68

               
               
               Conread position:208-372
               
               
               Cow position:chr20:35460341-35460519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:208-375
               
               
               Cow position:chr20:11444268-11444099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:209-372
               
               
               Cow position:chr20:23506281-23506447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:210-328
               
               
               Cow position:chr20:30027540-30027421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:210-362
               
               
               Cow position:chr20:11043283-11043439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-366
               
               
               Cow position:chr20:20739096-20739255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):115, 134

               
               
               Conread position:210-370
               
               
               Cow position:chr20:18392080-18392240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-370
               
               
               Cow position:chr20:23064644-23064805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):140, 111

               
               
               Conread position:210-371
               
               
               Cow position:chr20:12995816-12995981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):115, 26

               
               
               Conread position:210-372
               
               
               Cow position:chr20:15565639-15565804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):120, 16

               
               
               Conread position:210-372
               
               
               Cow position:chr20:23870628-23870795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr20:33438789-33438957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:211-326
               
               
               Cow position:chr20:31077969-31077856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:211-369
               
               
               Cow position:chr20:38514968-38514805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):66, 70

               
               
               Conread position:212-372
               
               
               Cow position:chr20:3320955-3321109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr20:6096306-6096472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:213-323
               
               
               Cow position:chr20:26790423-26790533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr20:21721397-21721283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-348
               
               
               Cow position:chr20:36671246-36671383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):111, 54

               
               
               Conread position:215-328
               
               
               Cow position:chr20:2823056-2822943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-331
               
               
               Cow position:chr20:27340501-27340385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr20:2169540-2169698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):112, 5

               
               
               Conread position:216-355
               
               
               Cow position:chr20:8021311-8021168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:216-370
               
               
               Cow position:chr20:6372379-6372534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:216-371
               
               
               Cow position:chr20:12085252-12085409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr20:35208020-35208183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:217-372
               
               
               Cow position:chr20:34202819-34202657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:217-373
               
               
               Cow position:chr20:16548095-16548256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:218-328
               
               
               Cow position:chr20:5078454-5078345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:218-328
               
               
               Cow position:chr20:15515257-15515367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-328
               
               
               Cow position:chr20:21815742-21815634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:218-348
               
               
               Cow position:chr20:20099418-20099545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr20:7416984-7417144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:219-328
               
               
               Cow position:chr20:19834647-19834757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:219-370
               
               
               Cow position:chr20:40158082-40157925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr20:5078809-5078650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr20:10772389-10772229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:219-372
               
               
               Cow position:chr20:29805477-29805635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):108, 71

               
               
               Conread position:220-372
               
               
               Cow position:chr20:38551545-38551395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:220-372
               
               
               Cow position:chr20:40303706-40303860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr20:40782143-40781984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:221-370
               
               
               Cow position:chr20:14490426-14490275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr20:38090092-38089986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-342
               
               
               Cow position:chr20:30710458-30710580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:222-368
               
               
               Cow position:chr20:34097774-34097929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr20:15530039-15529887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 91

               
               
               Conread position:222-372
               
               
               Cow position:chr20:4945074-4945228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr20:5365105-5364953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr20:5703651-5703494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr20:6054330-6054486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr20:10200525-10200369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr20:12534561-12534718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr20:14283099-14282943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr20:22959169-22959323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 70

               
               
               Conread position:222-372
               
               
               Cow position:chr20:24712020-24711863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr20:29845231-29845074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr20:39016693-39016851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-388
               
               
               Cow position:chr20:39962754-39962582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:223-370
               
               
               Cow position:chr20:354723-354872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):111, 123

               
               
               Conread position:223-371
               
               
               Cow position:chr20:10818063-10818216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:223-372
               
               
               Cow position:chr20:22485036-22484885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 5

               
               
               Conread position:223-372
               
               
               Cow position:chr20:23590571-23590724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:224-367
               
               
               Cow position:chr20:36741640-36741504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):113, 87

               
               
               Conread position:224-368
               
               
               Cow position:chr20:17388709-17388558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:224-371
               
               
               Cow position:chr20:11135576-11135737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr20:3141750-3141597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:224-372
               
               
               Cow position:chr20:11008349-11008193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr20:11359458-11359608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr20:12126125-12126281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr20:20898413-20898567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:225-341
               
               
               Cow position:chr20:20312334-20312454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:225-371
               
               
               Cow position:chr20:19751483-19751331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr20:21428335-21428184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 43

               
               
               Conread position:225-372
               
               
               Cow position:chr20:23678539-23678694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:226-365
               
               
               Cow position:chr20:32463349-32463490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):111, 103

               
               
               Conread position:226-372
               
               
               Cow position:chr20:3599223-3599372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:226-372
               
               
               Cow position:chr20:7441963-7442109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:226-372
               
               
               Cow position:chr20:20934558-20934709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:227-372
               
               
               Cow position:chr20:11038748-11038605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:227-372
               
               
               Cow position:chr20:20967495-20967344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr20:21372482-21372331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr20:35727756-35727907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:228-328
               
               
               Cow position:chr20:20590128-20590228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-348
               
               
               Cow position:chr20:2316252-2316376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-352
               
               
               Cow position:chr20:11499179-11499056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:228-372
               
               
               Cow position:chr20:9433758-9433610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:233-372
               
               
               Cow position:chr20:4334361-4334507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:234-348
               
               
               Cow position:chr20:27315144-27315031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:234-371
               
               
               Cow position:chr20:42458689-42458832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr20:13652200-13652344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr20:15568782-15568926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr20:16941121-16941264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 114

               
               
               Conread position:234-372
               
               
               Cow position:chr20:21345600-21345452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr20:37919199-37919347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:235-370
               
               
               Cow position:chr20:11188641-11188776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 73

               
               
               Conread position:235-372
               
               
               Cow position:chr20:17251883-17251741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr20:30119414-30119548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:242-371
               
               
               Cow position:chr20:20984151-20984016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr20:361031-361163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr20:16492232-16492095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-366
               
               
               Cow position:chr20:31323943-31323817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:257-372
               
               
               Cow position:chr20:6424112-6423994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:85-314
               
               
               Cow position:chr21:40573714-40573951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:90-372
               
               
               Cow position:chr21:10633307-10633593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):156, 21

               
               
               Conread position:159-370
               
               
               Cow position:chr21:13738824-13738606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 130

               
               
               Conread position:159-370
               
               
               Cow position:chr21:18940306-18940530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:160-328
               
               
               Cow position:chr21:12200362-12200194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:160-348
               
               
               Cow position:chr21:5130103-5130296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:160-367
               
               
               Cow position:chr21:28823960-28824176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):81, 107

               
               
               Conread position:160-368
               
               
               Cow position:chr21:27624961-27624746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr21:26567514-26567734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr21:30119960-30119738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr21:33563269-33563052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):37, 152

               
               
               Conread position:160-372
               
               
               Cow position:chr21:39401854-39401637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:176-276
               
               
               Cow position:chr21:16862221-16862323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:176-327
               
               
               Cow position:chr21:5136957-5137110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:176-372
               
               
               Cow position:chr21:734837-734638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:181-333
               
               
               Cow position:chr21:42135375-42135526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:183-328
               
               
               Cow position:chr21:41287552-41287699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:185-322
               
               
               Cow position:chr21:1264657-1264521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:185-372
               
               
               Cow position:chr21:30157569-30157761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):142, 76

               
               
               Conread position:189-372
               
               
               Cow position:chr21:10538026-10538211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):135, 44

               
               
               Conread position:191-372
               
               
               Cow position:chr21:3360784-3360969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:191-372
               
               
               Cow position:chr21:7581674-7581861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):124, 158

               
               
               Conread position:192-327
               
               
               Cow position:chr21:30024446-30024576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:192-329
               
               
               Cow position:chr21:33350969-33350834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:193-371
               
               
               Cow position:chr21:44565494-44565672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:193-372
               
               
               Cow position:chr21:396096-395912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:194-363
               
               
               Cow position:chr21:30249980-30250148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:195-372
               
               
               Cow position:chr21:29978532-29978716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:196-368
               
               
               Cow position:chr21:7394602-7394432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 94

               
               
               Conread position:198-328
               
               
               Cow position:chr21:31993049-31992922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:198-371
               
               
               Cow position:chr21:46470407-46470231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:199-372
               
               
               Cow position:chr21:42463473-42463644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:200-372
               
               
               Cow position:chr21:37344881-37345055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):125, 16

               
               
               Conread position:201-331
               
               
               Cow position:chr21:42905176-42905307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:204-345
               
               
               Cow position:chr21:7686594-7686735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:204-372
               
               
               Cow position:chr21:42413878-42414054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:207-371
               
               
               Cow position:chr21:4281664-4281830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 69

               
               
               Conread position:208-369
               
               
               Cow position:chr21:19359962-19360129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:209-372
               
               
               Cow position:chr21:26245127-26244958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:210-322
               
               
               Cow position:chr21:652365-652477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr21:18800322-18800440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr21:40305157-40305037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:210-341
               
               
               Cow position:chr21:21479091-21479224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:210-353
               
               
               Cow position:chr21:25159383-25159239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):120, 132

               
               
               Conread position:210-363
               
               
               Cow position:chr21:27568962-27569116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:210-372
               
               
               Cow position:chr21:33930-33763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:210-372
               
               
               Cow position:chr21:23321866-23322034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr21:24642724-24642565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 68

               
               
               Conread position:210-372
               
               
               Cow position:chr21:28924322-28924153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr21:30256062-30256225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):140, 99

               
               
               Conread position:210-372
               
               
               Cow position:chr21:36795815-36795647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr21:42384721-42384552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr21:44591997-44592165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 7

               
               
               Conread position:210-372
               
               
               Cow position:chr21:45920849-45921014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):120, 23

               
               
               Conread position:211-322
               
               
               Cow position:chr21:6041993-6041884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:211-328
               
               
               Cow position:chr21:42466000-42465882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:211-366
               
               
               Cow position:chr21:14228068-14228230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:211-369
               
               
               Cow position:chr21:11057670-11057831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:211-369
               
               
               Cow position:chr21:30980367-30980530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr21:2809954-2810115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 42

               
               
               Conread position:211-372
               
               
               Cow position:chr21:18779767-18779927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:212-369
               
               
               Cow position:chr21:36682535-36682372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr21:3818418-3818253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:212-372
               
               
               Cow position:chr21:41974170-41974330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:212-372
               
               
               Cow position:chr21:42841388-42841553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):117, 7

               
               
               Conread position:212-372
               
               
               Cow position:chr21:46132783-46132618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:213-345
               
               
               Cow position:chr21:37361034-37361164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:213-348
               
               
               Cow position:chr21:15279877-15279742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:213-372
               
               
               Cow position:chr21:10004679-10004841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:213-372
               
               
               Cow position:chr21:41610379-41610211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr21:47363524-47363692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:214-329
               
               
               Cow position:chr21:32297311-32297426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-348
               
               
               Cow position:chr21:32272127-32271997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:214-357
               
               
               Cow position:chr21:5406024-5405875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr21:18790358-18790517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 83

               
               
               Conread position:214-372
               
               
               Cow position:chr21:20318716-20318557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):115, 20

               
               
               Conread position:215-328
               
               
               Cow position:chr21:5341888-5342000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr21:10114129-10114286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:215-372
               
               
               Cow position:chr21:42562836-42562676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 134

               
               
               Conread position:216-368
               
               
               Cow position:chr21:29485184-29485030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 52

               
               
               Conread position:216-369
               
               
               Cow position:chr21:28237502-28237659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:217-367
               
               
               Cow position:chr21:36910136-36909980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr21:13584856-13585015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr21:15584214-15584375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:218-360
               
               
               Cow position:chr21:27810589-27810449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:218-372
               
               
               Cow position:chr21:47244-47084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr21:868722-868880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):112, 13

               
               
               Conread position:218-372
               
               
               Cow position:chr21:34010194-34010350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 37

               
               
               Conread position:218-372
               
               
               Cow position:chr21:47763914-47764073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):112, 66

               
               
               Conread position:219-334
               
               
               Cow position:chr21:3015985-3016098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:219-370
               
               
               Cow position:chr21:40266324-40266171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:219-372
               
               
               Cow position:chr21:11779338-11779492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:219-372
               
               
               Cow position:chr21:13588962-13588808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:220-346
               
               
               Cow position:chr21:27744226-27744101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:220-348
               
               
               Cow position:chr21:42017402-42017533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 5

               
               
               Conread position:220-372
               
               
               Cow position:chr21:41041145-41040988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 34

               
               
               Conread position:220-372
               
               
               Cow position:chr21:42007262-42007417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:221-370
               
               
               Cow position:chr21:10410423-10410270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr21:19259020-19258866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:222-330
               
               
               Cow position:chr21:6291946-6291838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-347
               
               
               Cow position:chr21:8986223-8986093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr21:32339540-32339693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr21:9278725-9278568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr21:7377726-7377882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr21:8545823-8545974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):107, 122

               
               
               Conread position:222-372
               
               
               Cow position:chr21:10264232-10264077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:222-372
               
               
               Cow position:chr21:14452434-14452278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr21:17184117-17183966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):108, 132

               
               
               Conread position:222-372
               
               
               Cow position:chr21:20153154-20153000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr21:27677680-27677526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr21:30231499-30231650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr21:37706215-37706371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr21:40475698-40475543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr21:47713809-47713960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:223-371
               
               
               Cow position:chr21:40291549-40291701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):107, 88

               
               
               Conread position:223-372
               
               
               Cow position:chr21:13365539-13365387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:223-372
               
               
               Cow position:chr21:21169297-21169448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:224-328
               
               
               Cow position:chr21:9990708-9990604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-340
               
               
               Cow position:chr21:23672943-23672827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-352
               
               
               Cow position:chr21:29418766-29418636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr21:7493075-7493222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 118

               
               
               Conread position:224-371
               
               
               Cow position:chr21:9416447-9416295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:224-372
               
               
               Cow position:chr21:471874-471720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:224-372
               
               
               Cow position:chr21:976943-977104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr21:3585171-3585324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr21:8213085-8213234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr21:24797852-24797701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr21:31253729-31253581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):118, 27

               
               
               Conread position:224-372
               
               
               Cow position:chr21:40589283-40589440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:225-357
               
               
               Cow position:chr21:48482333-48482469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr21:22210047-22210202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr21:31159594-31159446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):125, 86

               
               
               Conread position:225-372
               
               
               Cow position:chr21:36508431-36508282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr21:8506350-8506452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:83
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr21:8509238-8509340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-365
               
               
               Cow position:chr21:643520-643375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr21:6051699-6051547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:226-372
               
               
               Cow position:chr21:41579950-41579800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:226-383
               
               
               Cow position:chr21:27521144-27521300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 84

               
               
               Conread position:227-369
               
               
               Cow position:chr21:43259416-43259266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:227-372
               
               
               Cow position:chr21:938214-938065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:227-372
               
               
               Cow position:chr21:1511482-1511337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):123, 7

               
               
               Conread position:227-372
               
               
               Cow position:chr21:20160871-20160720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr21:23535904-23535755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:227-372
               
               
               Cow position:chr21:41598006-41597855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr21:21907238-21907401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:228-328
               
               
               Cow position:chr21:641781-641681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-329
               
               
               Cow position:chr21:8359031-8359132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-348
               
               
               Cow position:chr21:13043828-13043950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):100, 22

               
               
               Conread position:228-365
               
               
               Cow position:chr21:8978641-8978500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:228-365
               
               
               Cow position:chr21:37928843-37928700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr21:28244664-28244516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr21:36763259-36763106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr21:6735996-6736145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:228-372
               
               
               Cow position:chr21:7768632-7768482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:229-348
               
               
               Cow position:chr21:40059223-40059098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:229-360
               
               
               Cow position:chr21:31658958-31659091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr21:27341402-27341547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:230-389
               
               
               Cow position:chr21:5898211-5898374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:231-372
               
               
               Cow position:chr21:44860930-44861069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):119, 5

               
               
               Conread position:233-372
               
               
               Cow position:chr21:37837877-37838022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr21:38900961-38900818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:234-370
               
               
               Cow position:chr21:15976820-15976679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:234-372
               
               
               Cow position:chr21:957858-957717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:234-372
               
               
               Cow position:chr21:14760753-14760618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr21:17642798-17642940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:234-372
               
               
               Cow position:chr21:38720435-38720296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:234-372
               
               
               Cow position:chr21:45473569-45473714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:235-370
               
               
               Cow position:chr21:23587068-23586928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:235-371
               
               
               Cow position:chr21:45970987-45971127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr21:713130-712986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr21:15544041-15544176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:235-372
               
               
               Cow position:chr21:25014846-25014982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):108, 43

               
               
               Conread position:236-371
               
               
               Cow position:chr21:1059262-1059125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:237-359
               
               
               Cow position:chr21:26735589-26735466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:238-372
               
               
               Cow position:chr21:25383210-25383068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:240-371
               
               
               Cow position:chr21:22939952-22939812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:241-370
               
               
               Cow position:chr21:30835544-30835412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 105

               
               
               Conread position:241-372
               
               
               Cow position:chr21:13225896-13225759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:243-372
               
               
               Cow position:chr21:17063101-17062968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:257-372
               
               
               Cow position:chr21:23460298-23460181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:85-334
               
               
               Cow position:chr22:6122617-6122863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:85-377
               
               
               Cow position:chr22:18847699-18847987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 76

               
               
               Conread position:90-328
               
               
               Cow position:chr22:22606496-22606252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):67, 25

               
               
               Conread position:149-364
               
               
               Cow position:chr22:8115884-8116103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):175, 84

               
               
               Conread position:160-345
               
               
               Cow position:chr22:26107304-26107130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:160-348
               
               
               Cow position:chr22:3997942-3997756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):170, 16

               
               
               Conread position:160-372
               
               
               Cow position:chr22:3965381-3965163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr22:32188653-32188877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:160-389
               
               
               Cow position:chr22:23176252-23176481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):164, 16

               
               
               Conread position:167-365
               
               
               Cow position:chr22:4060756-4060963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:176-334
               
               
               Cow position:chr22:1602424-1602268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:176-369
               
               
               Cow position:chr22:43119546-43119749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:176-371
               
               
               Cow position:chr22:31154134-31153931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:176-372
               
               
               Cow position:chr22:6326620-6326421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):151, 46

               
               
               Conread position:177-372
               
               
               Cow position:chr22:3950430-3950229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:178-359
               
               
               Cow position:chr22:35438501-35438317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:179-330
               
               
               Cow position:chr22:34606769-34606616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:180-327
               
               
               Cow position:chr22:531305-531451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:181-388
               
               
               Cow position:chr22:26659216-26659014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:185-357
               
               
               Cow position:chr22:31309052-31308885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:185-372
               
               
               Cow position:chr22:10533764-10533575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 145

               
               
               Conread position:185-389
               
               
               Cow position:chr22:37324711-37324503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):142, 60

               
               
               Conread position:186-372
               
               
               Cow position:chr22:1609603-1609784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):65, 77

               
               
               Conread position:191-328
               
               
               Cow position:chr22:14815945-14816081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:191-361
               
               
               Cow position:chr22:2516744-2516911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:192-365
               
               
               Cow position:chr22:17294774-17294952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):135, 58

               
               
               Conread position:192-371
               
               
               Cow position:chr22:17814397-17814211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr22:8840764-8840582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):137, 28

               
               
               Conread position:193-307
               
               
               Cow position:chr22:21145434-21145550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:193-328
               
               
               Cow position:chr22:1977911-1977776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-389
               
               
               Cow position:chr22:22155765-22155564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):131, 75

               
               
               Conread position:194-372
               
               
               Cow position:chr22:13841299-13841117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):152, 51

               
               
               Conread position:195-372
               
               
               Cow position:chr22:28704344-28704161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:198-370
               
               
               Cow position:chr22:10609514-10609337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:200-326
               
               
               Cow position:chr22:13327048-13326923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:202-371
               
               
               Cow position:chr22:1911816-1911643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:204-348
               
               
               Cow position:chr22:45505854-45505998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:204-368
               
               
               Cow position:chr22:2216959-2216802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:204-369
               
               
               Cow position:chr22:31510230-31510400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:204-370
               
               
               Cow position:chr22:21530208-21530381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:204-372
               
               
               Cow position:chr22:2502977-2502803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:206-369
               
               
               Cow position:chr22:34750820-34750655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):118, 39

               
               
               Conread position:206-372
               
               
               Cow position:chr22:13878326-13878158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr22:21890212-21890379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 61

               
               
               Conread position:208-372
               
               
               Cow position:chr22:35753158-35753329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:209-370
               
               
               Cow position:chr22:33447938-33448101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 7

               
               
               Conread position:209-372
               
               
               Cow position:chr22:7361834-7362000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:210-328
               
               
               Cow position:chr22:23036312-23036191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr22:27431560-27431676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr22:31064547-31064430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr22:41682283-41682401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-343
               
               
               Cow position:chr22:26490654-26490509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr22:7832211-7832377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):119, 7

               
               
               Conread position:210-372
               
               
               Cow position:chr22:10338976-10339138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:210-372
               
               
               Cow position:chr22:10752396-10752565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr22:12188336-12188503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr22:13222262-13222092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr22:16823235-16823080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:210-372
               
               
               Cow position:chr22:26123041-26122874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):116, 35

               
               
               Conread position:210-372
               
               
               Cow position:chr22:27328747-27328915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr22:34726808-34726644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:211-360
               
               
               Cow position:chr22:16797704-16797859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:211-365
               
               
               Cow position:chr22:3486634-3486788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):133, 108

               
               
               Conread position:211-372
               
               
               Cow position:chr22:14647226-14647060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):118, 54

               
               
               Conread position:211-372
               
               
               Cow position:chr22:26075068-26074897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr22:28120870-28120697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr22:44180740-44180570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:212-328
               
               
               Cow position:chr22:3250853-3250967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr22:25236999-25237164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:212-372
               
               
               Cow position:chr22:27047273-27047429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 6

               
               
               Conread position:213-328
               
               
               Cow position:chr22:9325978-9325864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:213-328
               
               
               Cow position:chr22:16058116-16058003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:213-365
               
               
               Cow position:chr22:28071700-28071543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):115, 84

               
               
               Conread position:213-372
               
               
               Cow position:chr22:16044274-16044439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:213-373
               
               
               Cow position:chr22:23750757-23750918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 7

               
               
               Conread position:214-371
               
               
               Cow position:chr22:16845263-16845426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr22:4535188-4535348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:214-372
               
               
               Cow position:chr22:16621322-16621153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr22:24610952-24611115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:215-371
               
               
               Cow position:chr22:7074518-7074363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:215-371
               
               
               Cow position:chr22:27274560-27274720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr22:20846997-20846831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:216-327
               
               
               Cow position:chr22:8138125-8138237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:216-370
               
               
               Cow position:chr22:3842756-3842599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr22:12195430-12195590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:217-365
               
               
               Cow position:chr22:26267985-26267834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):113, 125

               
               
               Conread position:217-372
               
               
               Cow position:chr22:24032077-24032238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:217-376
               
               
               Cow position:chr22:3240042-3239885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):124, 28

               
               
               Conread position:217-389
               
               
               Cow position:chr22:10286108-10285928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:218-328
               
               
               Cow position:chr22:45683902-45684012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:218-351
               
               
               Cow position:chr22:35533099-35533232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr22:14690835-14690994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:218-372
               
               
               Cow position:chr22:44384366-44384517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr22:47562841-47562680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:219-326
               
               
               Cow position:chr22:27066514-27066407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-369
               
               
               Cow position:chr22:4017609-4017457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:219-371
               
               
               Cow position:chr22:18967025-18967180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):108, 127

               
               
               Conread position:219-372
               
               
               Cow position:chr22:31599569-31599416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:219-372
               
               
               Cow position:chr22:37029472-37029627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr22:5290985-5290827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr22:47555983-47555828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):110, 122

               
               
               Conread position:221-348
               
               
               Cow position:chr22:30713177-30713047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:221-370
               
               
               Cow position:chr22:40789697-40789545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:221-372
               
               
               Cow position:chr22:13286581-13286432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr22:28665416-28665260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:222-335
               
               
               Cow position:chr22:1552033-1551921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:222-359
               
               
               Cow position:chr22:9279157-9279017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-363
               
               
               Cow position:chr22:23265519-23265666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-365
               
               
               Cow position:chr22:14488068-14487919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr22:6176153-6176305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr22:1776193-1776038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr22:18933581-18933738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr22:39602415-39602260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr22:12389232-12389076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr22:12829478-12829635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:222-372
               
               
               Cow position:chr22:13866798-13866641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr22:18926489-18926333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr22:30643000-30643157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:222-389
               
               
               Cow position:chr22:38977974-38977801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:223-328
               
               
               Cow position:chr22:9171540-9171435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:223-332
               
               
               Cow position:chr22:1074396-1074287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr22:2627711-2627553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:223-372
               
               
               Cow position:chr22:3301207-3301362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr22:5595679-5595832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr22:8412659-8412503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 28

               
               
               Conread position:223-372
               
               
               Cow position:chr22:32698892-32698741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:224-347
               
               
               Cow position:chr22:2704429-2704302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-365
               
               
               Cow position:chr22:36432841-36432986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr22:1849205-1849051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr22:4156686-4156840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr22:4583691-4583538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:224-372
               
               
               Cow position:chr22:6096886-6097040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr22:9372654-9372498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr22:12678291-12678445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr22:15024979-15025133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 124

               
               
               Conread position:224-372
               
               
               Cow position:chr22:15490785-15490630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr22:37201978-37201826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 9

               
               
               Conread position:224-372
               
               
               Cow position:chr22:43237277-43237431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:225-369
               
               
               Cow position:chr22:24915967-24915815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:225-371
               
               
               Cow position:chr22:3282697-3282844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):100, 41

               
               
               Conread position:225-372
               
               
               Cow position:chr22:12573334-12573189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 100

               
               
               Conread position:226-328
               
               
               Cow position:chr22:7518684-7518582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-364
               
               
               Cow position:chr22:21484070-21483933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 111

               
               
               Conread position:226-370
               
               
               Cow position:chr22:33399359-33399509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:226-371
               
               
               Cow position:chr22:5712715-5712566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:226-371
               
               
               Cow position:chr22:10553556-10553707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:226-371
               
               
               Cow position:chr22:15737363-15737212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr22:530449-530592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr22:8090405-8090551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 19

               
               
               Conread position:226-372
               
               
               Cow position:chr22:8733208-8733361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr22:11130999-11130847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr22:12315939-12315788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 71

               
               
               Conread position:227-372
               
               
               Cow position:chr22:16251447-16251593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:227-372
               
               
               Cow position:chr22:24175768-24175912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr22:28937809-28937955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:227-372
               
               
               Cow position:chr22:42050699-42050551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:228-341
               
               
               Cow position:chr22:45788733-45788620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:228-365
               
               
               Cow position:chr22:12902726-12902863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 110

               
               
               Conread position:228-368
               
               
               Cow position:chr22:8287310-8287168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr22:10919728-10919874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:228-372
               
               
               Cow position:chr22:877642-877492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr22:1326545-1326398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 41

               
               
               Conread position:228-372
               
               
               Cow position:chr22:4075757-4075910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr22:8883140-8882992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr22:13719905-13720044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr22:14372297-14372156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr22:25221773-25221918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:229-330
               
               
               Cow position:chr22:17652561-17652460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr22:2644054-2643907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr22:23372738-23372887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:229-372
               
               
               Cow position:chr22:25540125-25539976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:230-341
               
               
               Cow position:chr22:46186219-46186109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr22:23675843-23675986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 114

               
               
               Conread position:231-372
               
               
               Cow position:chr22:23398280-23398427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr22:12749779-12749924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr22:14924610-14924755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr22:35029390-35029246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):99, 64

               
               
               Conread position:234-348
               
               
               Cow position:chr22:12777256-12777374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:234-368
               
               
               Cow position:chr22:2876677-2876817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr22:2912469-2912609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:234-372
               
               
               Cow position:chr22:7165085-7164939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr22:12967947-12968092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr22:30049445-30049589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr22:534619-534476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 115

               
               
               Conread position:235-372
               
               
               Cow position:chr22:9597460-9597601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr22:14381779-14381636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr22:23857167-23857023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr22:27741010-27740869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr22:25943594-25943452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr22:41854026-41853882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:236-383
               
               
               Cow position:chr22:34616425-34616273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):91, 148

               
               
               Conread position:237-371
               
               
               Cow position:chr22:15668358-15668490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:237-371
               
               
               Cow position:chr22:28672262-28672123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:238-369
               
               
               Cow position:chr22:25742832-25742969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:238-372
               
               
               Cow position:chr22:11344624-11344487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:239-372
               
               
               Cow position:chr22:3945483-3945355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:240-365
               
               
               Cow position:chr22:5616416-5616286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:241-372
               
               
               Cow position:chr22:24628544-24628679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:246-372
               
               
               Cow position:chr22:30269517-30269389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:248-372
               
               
               Cow position:chr22:11458922-11458799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:269-372
               
               
               Cow position:chr22:43291816-43291920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:149-372
               
               
               Cow position:chr23:20434854-20435082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:160-328
               
               
               Cow position:chr23:5386881-5387058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr23:4967012-4966804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):164, 29

               
               
               Conread position:160-372
               
               
               Cow position:chr23:19370874-19371092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:165-372
               
               
               Cow position:chr23:360497-360707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:176-348
               
               
               Cow position:chr23:19273836-19273663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:176-372
               
               
               Cow position:chr23:1742537-1742340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):166, 45

               
               
               Conread position:178-348
               
               
               Cow position:chr23:32546091-32546256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:178-367
               
               
               Cow position:chr23:5174728-5174535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 156

               
               
               Conread position:180-372
               
               
               Cow position:chr23:4528698-4528894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:181-328
               
               
               Cow position:chr23:14739628-14739481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:186-371
               
               
               Cow position:chr23:10876574-10876382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:189-372
               
               
               Cow position:chr23:25358884-25358712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):162, 65

               
               
               Conread position:192-325
               
               
               Cow position:chr23:41099608-41099740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:192-327
               
               
               Cow position:chr23:12602305-12602441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:192-371
               
               
               Cow position:chr23:4241473-4241654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr23:21438666-21438476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr23:39780921-39780737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):129, 41

               
               
               Conread position:193-348
               
               
               Cow position:chr23:38845769-38845607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:193-363
               
               
               Cow position:chr23:27144979-27145148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:195-388
               
               
               Cow position:chr23:5686458-5686655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):136, 5

               
               
               Conread position:198-318
               
               
               Cow position:chr23:33717380-33717499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:198-328
               
               
               Cow position:chr23:21502468-21502598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:199-389
               
               
               Cow position:chr23:4916844-4916650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):131, 43

               
               
               Conread position:201-364
               
               
               Cow position:chr23:35930108-35929941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):129, 8

               
               
               Conread position:204-372
               
               
               Cow position:chr23:4104552-4104381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:205-333
               
               
               Cow position:chr23:29972545-29972415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:206-372
               
               
               Cow position:chr23:30662487-30662642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:208-328
               
               
               Cow position:chr23:26591759-26591878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr23:4336219-4336052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:209-372
               
               
               Cow position:chr23:14164245-14164415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:209-372
               
               
               Cow position:chr23:30951108-30950937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:210-327
               
               
               Cow position:chr23:38845994-38845875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr23:17590954-17590834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:210-328
               
               
               Cow position:chr23:18354799-18354682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:210-331
               
               
               Cow position:chr23:1671184-1671061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:210-333
               
               
               Cow position:chr23:3471157-3471034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-348
               
               
               Cow position:chr23:5203782-5203923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 68

               
               
               Conread position:210-349
               
               
               Cow position:chr23:23114209-23114066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-366
               
               
               Cow position:chr23:13673881-13674043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:210-369
               
               
               Cow position:chr23:21439850-21440013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:210-371
               
               
               Cow position:chr23:10553858-10554025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:210-371
               
               
               Cow position:chr23:21336335-21336500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:210-372
               
               
               Cow position:chr23:3244315-3244486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr23:3835445-3835612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:211-328
               
               
               Cow position:chr23:33673022-33672905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-328
               
               
               Cow position:chr23:35199490-35199373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-369
               
               
               Cow position:chr23:20604556-20604733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:211-371
               
               
               Cow position:chr23:1397889-1398055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:211-371
               
               
               Cow position:chr23:27790165-27790001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 34

               
               
               Conread position:211-372
               
               
               Cow position:chr23:57012-57181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:212-368
               
               
               Cow position:chr23:18787137-18787297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):110, 141

               
               
               Conread position:212-369
               
               
               Cow position:chr23:35368898-35369060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):119, 61

               
               
               Conread position:212-370
               
               
               Cow position:chr23:3281974-3282137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):116, 39

               
               
               Conread position:212-370
               
               
               Cow position:chr23:9734554-9734395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:212-371
               
               
               Cow position:chr23:35247515-35247351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 33

               
               
               Conread position:212-372
               
               
               Cow position:chr23:22297890-22298051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):128, 112

               
               
               Conread position:212-372
               
               
               Cow position:chr23:38455029-38455196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:213-328
               
               
               Cow position:chr23:26986124-26986238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:213-371
               
               
               Cow position:chr23:1767978-1767812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr23:5162577-5162416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr23:38208874-38208709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:214-328
               
               
               Cow position:chr23:204425-204313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:214-373
               
               
               Cow position:chr23:4877507-4877342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:215-369
               
               
               Cow position:chr23:29069296-29069455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:215-370
               
               
               Cow position:chr23:3234635-3234797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:215-371
               
               
               Cow position:chr23:4327556-4327717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:215-372
               
               
               Cow position:chr23:7574480-7574638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):132, 11

               
               
               Conread position:215-372
               
               
               Cow position:chr23:11129378-11129216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):108, 51

               
               
               Conread position:215-372
               
               
               Cow position:chr23:19269188-19269039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr23:25938244-25938404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):117, 86

               
               
               Conread position:216-362
               
               
               Cow position:chr23:18874269-18874418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:216-372
               
               
               Cow position:chr23:24700941-24701097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:217-372
               
               
               Cow position:chr23:4726935-4726777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:217-372
               
               
               Cow position:chr23:39793820-39793659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:218-328
               
               
               Cow position:chr23:3967417-3967527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-345
               
               
               Cow position:chr23:16780419-16780547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:218-348
               
               
               Cow position:chr23:19179232-19179367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:218-367
               
               
               Cow position:chr23:22530296-22530448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 146

               
               
               Conread position:219-371
               
               
               Cow position:chr23:5799323-5799477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:219-372
               
               
               Cow position:chr23:306664-306505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr23:307597-307438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr23:35656548-35656395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:219-389
               
               
               Cow position:chr23:22804866-22804690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 173

               
               
               Conread position:220-328
               
               
               Cow position:chr23:22238681-22238789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-347
               
               
               Cow position:chr23:3204919-3204788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:220-365
               
               
               Cow position:chr23:13511866-13511712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr23:8698561-8698403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr23:21309272-21309429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:220-372
               
               
               Cow position:chr23:28529815-28529965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):116, 8

               
               
               Conread position:220-372
               
               
               Cow position:chr23:35503912-35503766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:220-390
               
               
               Cow position:chr23:37065988-37065813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:221-372
               
               
               Cow position:chr23:13946177-13946021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:222-325
               
               
               Cow position:chr23:35718449-35718347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr23:1480778-1480672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-329
               
               
               Cow position:chr23:38118096-38117989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-348
               
               
               Cow position:chr23:1798249-1798119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr23:5436504-5436658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:222-371
               
               
               Cow position:chr23:5723673-5723529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr23:1701310-1701154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr23:4003785-4003627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr23:4968391-4968541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:222-372
               
               
               Cow position:chr23:4972904-4972749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 92

               
               
               Conread position:222-372
               
               
               Cow position:chr23:16582771-16582927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr23:25864560-25864717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 28

               
               
               Conread position:222-376
               
               
               Cow position:chr23:18739325-18739486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr23:18402151-18402307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:224-352
               
               
               Cow position:chr23:32479881-32480010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 117

               
               
               Conread position:224-360
               
               
               Cow position:chr23:12405684-12405825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):103, 121

               
               
               Conread position:224-372
               
               
               Cow position:chr23:187315-187161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr23:1759383-1759230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):106, 142

               
               
               Conread position:224-372
               
               
               Cow position:chr23:26283859-26283707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):103, 63

               
               
               Conread position:224-372
               
               
               Cow position:chr23:39813636-39813486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):88, 99

               
               
               Conread position:225-389
               
               
               Cow position:chr23:13599476-13599310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):100, 123

               
               
               Conread position:226-351
               
               
               Cow position:chr23:21423902-21423773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:226-363
               
               
               Cow position:chr23:534362-534222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 129

               
               
               Conread position:226-372
               
               
               Cow position:chr23:39083585-39083433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:227-328
               
               
               Cow position:chr23:1503705-1503604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr23:1656028-1655860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:228-365
               
               
               Cow position:chr23:2501721-2501864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-365
               
               
               Cow position:chr23:5881385-5881528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr23:17597559-17597412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr23:18296940-18296791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr23:16447558-16447704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:233-368
               
               
               Cow position:chr23:29345640-29345777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 97

               
               
               Conread position:234-340
               
               
               Cow position:chr23:25933284-25933179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:234-355
               
               
               Cow position:chr23:18417219-18417094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):93, 114

               
               
               Conread position:234-364
               
               
               Cow position:chr23:4054343-4054208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:234-365
               
               
               Cow position:chr23:40995297-40995163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):39, 34

               
               
               Conread position:234-389
               
               
               Cow position:chr23:6994856-6995017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:235-368
               
               
               Cow position:chr23:14895548-14895687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:235-371
               
               
               Cow position:chr23:6592582-6592716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr23:14569375-14569518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr23:33601413-33601544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:235-433
               
               
               Cow position:chr23:21446242-21446041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:236-371
               
               
               Cow position:chr23:39753238-39753100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:236-372
               
               
               Cow position:chr23:23409858-23409716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:236-372
               
               
               Cow position:chr23:29480011-29479871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:236-383
               
               
               Cow position:chr23:41348500-41348653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:237-328
               
               
               Cow position:chr23:348824-348915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr23:37118590-37118727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:238-370
               
               
               Cow position:chr23:16699919-16700057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:239-372
               
               
               Cow position:chr23:23904207-23904345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 6

               
               
               Conread position:242-372
               
               
               Cow position:chr23:6035549-6035419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 37

               
               
               Conread position:245-350
               
               
               Cow position:chr23:22826325-22826434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:248-372
               
               
               Cow position:chr23:30655701-30655827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:253-372
               
               
               Cow position:chr23:38732352-38732232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:85-348
               
               
               Cow position:chr24:28024532-28024261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:93-348
               
               
               Cow position:chr24:22235712-22235449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:160-328
               
               
               Cow position:chr24:8006483-8006314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:160-372
               
               
               Cow position:chr24:43364528-43364317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):166, 31

               
               
               Conread position:163-325
               
               
               Cow position:chr24:12656877-12657040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:165-339
               
               
               Cow position:chr24:13058197-13058014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:169-328
               
               
               Cow position:chr24:28186349-28186508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 69

               
               
               Conread position:176-321
               
               
               Cow position:chr24:3626910-3627054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:176-340
               
               
               Cow position:chr24:1831405-1831572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:176-368
               
               
               Cow position:chr24:39806941-39806744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):68, 187

               
               
               Conread position:176-372
               
               
               Cow position:chr24:18970350-18970553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:181-328
               
               
               Cow position:chr24:14648208-14648353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:181-372
               
               
               Cow position:chr24:28326927-28327123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:184-372
               
               
               Cow position:chr24:11007608-11007416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:191-372
               
               
               Cow position:chr24:32739134-32739306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:192-359
               
               
               Cow position:chr24:14786521-14786348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:194-328
               
               
               Cow position:chr24:30202962-30202830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:194-372
               
               
               Cow position:chr24:18615139-18614957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 41

               
               
               Conread position:195-328
               
               
               Cow position:chr24:15373544-15373411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:195-372
               
               
               Cow position:chr24:16118501-16118316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:195-372
               
               
               Cow position:chr24:20969526-20969706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):133, 55

               
               
               Conread position:203-372
               
               
               Cow position:chr24:28470549-28470724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:204-333
               
               
               Cow position:chr24:18313803-18313932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:204-372
               
               
               Cow position:chr24:33465492-33465662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:206-370
               
               
               Cow position:chr24:24662003-24662173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:210-323
               
               
               Cow position:chr24:10840796-10840909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr24:39791664-39791547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:210-349
               
               
               Cow position:chr24:7113346-7113203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:210-366
               
               
               Cow position:chr24:11119401-11119239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr24:28289130-28289297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:210-372
               
               
               Cow position:chr24:31159739-31159575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:211-327
               
               
               Cow position:chr24:2353794-2353677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:211-371
               
               
               Cow position:chr24:19769618-19769446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr24:32204672-32204838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr24:34465380-34465550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:211-372
               
               
               Cow position:chr24:40404689-40404852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):111, 68

               
               
               Conread position:212-371
               
               
               Cow position:chr24:7390217-7390376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:213-370
               
               
               Cow position:chr24:29673641-29673480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:213-372
               
               
               Cow position:chr24:18390180-18390336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):52, 122

               
               
               Conread position:214-365
               
               
               Cow position:chr24:20225856-20225703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:214-366
               
               
               Cow position:chr24:32071081-32070925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr24:24457132-24457294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:215-370
               
               
               Cow position:chr24:34008454-34008615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr24:33098356-33098517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:216-328
               
               
               Cow position:chr24:39218434-39218546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-367
               
               
               Cow position:chr24:28690802-28690646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:216-369
               
               
               Cow position:chr24:27284933-27284780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:216-372
               
               
               Cow position:chr24:41406012-41405846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr24:17832704-17832859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 127

               
               
               Conread position:217-372
               
               
               Cow position:chr24:18741455-18741616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr24:38006604-38006752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr24:42726567-42726406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:218-347
               
               
               Cow position:chr24:27553210-27553078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:218-371
               
               
               Cow position:chr24:29605918-29606076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:218-372
               
               
               Cow position:chr24:35150633-35150478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:219-370
               
               
               Cow position:chr24:6151903-6151750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:219-373
               
               
               Cow position:chr24:18750822-18750659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:220-364
               
               
               Cow position:chr24:27349063-27349210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 141

               
               
               Conread position:220-371
               
               
               Cow position:chr24:16089341-16089184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:220-372
               
               
               Cow position:chr24:6102941-6102786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr24:22420072-22419966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-348
               
               
               Cow position:chr24:40055400-40055529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 83

               
               
               Conread position:222-365
               
               
               Cow position:chr24:13888814-13888667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:222-370
               
               
               Cow position:chr24:34742865-34742710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr24:27906550-27906394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr24:2992771-2992923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:222-372
               
               
               Cow position:chr24:11028578-11028728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 44

               
               
               Conread position:222-372
               
               
               Cow position:chr24:16645209-16645364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:222-372
               
               
               Cow position:chr24:18810943-18810801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr24:27149495-27149355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:222-375
               
               
               Cow position:chr24:39910922-39911081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):107, 51

               
               
               Conread position:222-375
               
               
               Cow position:chr24:44987263-44987422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-405
               
               
               Cow position:chr24:8676934-8676744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:223-345
               
               
               Cow position:chr24:32818193-32818315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:223-370
               
               
               Cow position:chr24:27290982-27290829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr24:21519538-21519385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:224-361
               
               
               Cow position:chr24:26848624-26848764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:224-371
               
               
               Cow position:chr24:28355586-28355729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):126, 10

               
               
               Conread position:224-372
               
               
               Cow position:chr24:880731-880587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr24:10300186-10300039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr24:11840295-11840143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:224-372
               
               
               Cow position:chr24:15347702-15347545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:224-372
               
               
               Cow position:chr24:17104460-17104614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr24:20943269-20943124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:225-317
               
               
               Cow position:chr24:27719418-27719510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:79
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-356
               
               
               Cow position:chr24:43024369-43024236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr24:29679204-29679354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:226-359
               
               
               Cow position:chr24:41565993-41566126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:226-365
               
               
               Cow position:chr24:5754943-5754799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:226-372
               
               
               Cow position:chr24:3493990-3493840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:226-372
               
               
               Cow position:chr24:39523341-39523493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:227-352
               
               
               Cow position:chr24:256133-256009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:227-373
               
               
               Cow position:chr24:34390383-34390237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:228-348
               
               
               Cow position:chr24:31383221-31383102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr24:22133277-22133130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr24:28600327-28600480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:229-352
               
               
               Cow position:chr24:21623327-21623201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:230-369
               
               
               Cow position:chr24:19187041-19186901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):120, 99

               
               
               Conread position:231-372
               
               
               Cow position:chr24:27202191-27202045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr24:16895037-16895175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:234-364
               
               
               Cow position:chr24:32890944-32891080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr24:17955345-17955488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:235-331
               
               
               Cow position:chr24:16510076-16509980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr24:35576441-35576579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:236-369
               
               
               Cow position:chr24:23000112-22999976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr24:28553470-28553598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:239-373
               
               
               Cow position:chr24:43200181-43200315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:240-372
               
               
               Cow position:chr24:16268035-16268171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):92, 108

               
               
               Conread position:240-372
               
               
               Cow position:chr24:34496218-34496075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr24:43832622-43832485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:245-372
               
               
               Cow position:chr24:27418015-27418142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:253-372
               
               
               Cow position:chr24:23667041-23667162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:253-372
               
               
               Cow position:chr24:34556115-34555992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:85-372
               
               
               Cow position:chr25:9938987-9939278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:156-372
               
               
               Cow position:chr25:36017726-36017520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:160-322
               
               
               Cow position:chr25:8223099-8222940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr25:21894686-21894906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 152

               
               
               Conread position:171-348
               
               
               Cow position:chr25:14224411-14224587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:176-323
               
               
               Cow position:chr25:14134432-14134284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:180-333
               
               
               Cow position:chr25:13550883-13551037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:181-372
               
               
               Cow position:chr25:12252634-12252830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:190-372
               
               
               Cow position:chr25:26052065-26051880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):139, 43

               
               
               Conread position:191-326
               
               
               Cow position:chr25:25828873-25828738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:191-327
               
               
               Cow position:chr25:12899896-12899756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:191-387
               
               
               Cow position:chr25:33256516-33256317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:192-316
               
               
               Cow position:chr25:17775160-17775037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:192-371
               
               
               Cow position:chr25:10359799-10359605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:192-372
               
               
               Cow position:chr25:26161134-26160943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr25:34241941-34242126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):132, 52

               
               
               Conread position:193-341
               
               
               Cow position:chr25:21926282-21926431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:194-367
               
               
               Cow position:chr25:36762267-36762088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:198-334
               
               
               Cow position:chr25:35624727-35624857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:198-369
               
               
               Cow position:chr25:22531440-22531264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 150

               
               
               Conread position:199-369
               
               
               Cow position:chr25:36019513-36019685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 55

               
               
               Conread position:199-372
               
               
               Cow position:chr25:14197019-14196839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:200-372
               
               
               Cow position:chr25:35109111-35109291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:203-325
               
               
               Cow position:chr25:31343942-31344064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:205-372
               
               
               Cow position:chr25:30619211-30619042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):121, 7

               
               
               Conread position:206-369
               
               
               Cow position:chr25:12064202-12064029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):5, 67

               
               
               Conread position:208-341
               
               
               Cow position:chr25:11272520-11272386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:209-348
               
               
               Cow position:chr25:5922561-5922699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr25:21285022-21284904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-347
               
               
               Cow position:chr25:23016166-23016025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-368
               
               
               Cow position:chr25:38421812-38421647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:210-369
               
               
               Cow position:chr25:20461247-20461088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:210-371
               
               
               Cow position:chr25:19478821-19478654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:211-329
               
               
               Cow position:chr25:15695408-15695290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-331
               
               
               Cow position:chr25:12509684-12509808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:211-333
               
               
               Cow position:chr25:32667126-32667248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-356
               
               
               Cow position:chr25:36135994-36136139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:211-370
               
               
               Cow position:chr25:22750863-22751027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:211-371
               
               
               Cow position:chr25:15218277-15218115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr25:23917986-23917824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:212-345
               
               
               Cow position:chr25:15254204-15254339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:212-347
               
               
               Cow position:chr25:13805158-13805023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:212-369
               
               
               Cow position:chr25:9843320-9843157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):118, 137

               
               
               Conread position:213-370
               
               
               Cow position:chr25:7581286-7581451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:213-372
               
               
               Cow position:chr25:24167552-24167717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:214-328
               
               
               Cow position:chr25:30624941-30625055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr25:61792-61628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr25:11585660-11585496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr25:18906027-18905863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr25:23779189-23779353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:216-372
               
               
               Cow position:chr25:3744606-3744768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:216-372
               
               
               Cow position:chr25:4009233-4009071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:217-328
               
               
               Cow position:chr25:15305814-15305706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr25:17658750-17658589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr25:31762470-31762630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:218-328
               
               
               Cow position:chr25:28597472-28597582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 49

               
               
               Conread position:218-347
               
               
               Cow position:chr25:23323628-23323495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:218-355
               
               
               Cow position:chr25:14241216-14241352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:218-372
               
               
               Cow position:chr25:10504203-10504359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:219-328
               
               
               Cow position:chr25:36872495-36872386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-332
               
               
               Cow position:chr25:7298763-7298879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr25:1823961-1824119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:220-328
               
               
               Cow position:chr25:7673437-7673329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:86
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-347
               
               
               Cow position:chr25:13735897-13736024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-369
               
               
               Cow position:chr25:23505188-23505033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 129

               
               
               Conread position:220-372
               
               
               Cow position:chr25:12807174-12807021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:221-328
               
               
               Cow position:chr25:40931408-40931301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-363
               
               
               Cow position:chr25:18201795-18201939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-367
               
               
               Cow position:chr25:7380706-7380856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:222-370
               
               
               Cow position:chr25:16921662-16921817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr25:432914-433070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr25:5846674-5846831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr25:13443276-13443432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 145

               
               
               Conread position:222-372
               
               
               Cow position:chr25:17474379-17474534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 126

               
               
               Conread position:222-372
               
               
               Cow position:chr25:33311192-33311349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:223-372
               
               
               Cow position:chr25:33776188-33776044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-329
               
               
               Cow position:chr25:26306072-26306177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:224-346
               
               
               Cow position:chr25:8596338-8596460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-363
               
               
               Cow position:chr25:36872924-36873069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 125

               
               
               Conread position:224-372
               
               
               Cow position:chr25:1838372-1838215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:224-372
               
               
               Cow position:chr25:9615969-9615815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr25:11956935-11956782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr25:20008265-20008110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr25:20069852-20069699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 106

               
               
               Conread position:225-316
               
               
               Cow position:chr25:23769758-23769847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:81
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:225-370
               
               
               Cow position:chr25:6473956-6474107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:226-346
               
               
               Cow position:chr25:14164325-14164205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-348
               
               
               Cow position:chr25:22519423-22519304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr25:13272700-13272547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr25:26072432-26072579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):117, 19

               
               
               Conread position:226-372
               
               
               Cow position:chr25:28187815-28187966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):101, 140

               
               
               Conread position:227-372
               
               
               Cow position:chr25:36120627-36120475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr25:33457860-33457713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 121

               
               
               Conread position:228-370
               
               
               Cow position:chr25:21893465-21893318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:228-370
               
               
               Cow position:chr25:27801396-27801262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):115, 34

               
               
               Conread position:228-372
               
               
               Cow position:chr25:9269471-9269326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):120, 96

               
               
               Conread position:228-372
               
               
               Cow position:chr25:26087649-26087497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:228-389
               
               
               Cow position:chr25:17403607-17403445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 139

               
               
               Conread position:229-372
               
               
               Cow position:chr25:7216951-7216810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 90

               
               
               Conread position:230-372
               
               
               Cow position:chr25:1763213-1763069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr25:30817015-30816867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:231-365
               
               
               Cow position:chr25:6928383-6928522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:233-371
               
               
               Cow position:chr25:14513238-14513093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr25:13503557-13503411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr25:26701150-26701008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:233-372
               
               
               Cow position:chr25:36081999-36081855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:234-328
               
               
               Cow position:chr25:6781984-6781890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:79
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr25:26655029-26654889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 99

               
               
               Conread position:234-372
               
               
               Cow position:chr25:30656527-30656668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:235-361
               
               
               Cow position:chr25:12840597-12840729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr25:17704865-17704722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr25:18564606-18564465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr25:23817721-23817862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:237-327
               
               
               Cow position:chr25:12205152-12205062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:77
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:237-371
               
               
               Cow position:chr25:24202894-24203021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:239-372
               
               
               Cow position:chr25:22242080-22241948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr25:22730943-22730807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:243-372
               
               
               Cow position:chr25:38982206-38982076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:246-389
               
               
               Cow position:chr25:8961880-8961733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:255-372
               
               
               Cow position:chr25:10364236-10364356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:90-345
               
               
               Cow position:chr26:23925359-23925615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:160-367
               
               
               Cow position:chr26:7183776-7183990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 175

               
               
               Conread position:160-369
               
               
               Cow position:chr26:32863456-32863666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:176-312
               
               
               Cow position:chr26:2344981-2345117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:176-372
               
               
               Cow position:chr26:22152424-22152224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:188-331
               
               
               Cow position:chr26:32672240-32672384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:191-372
               
               
               Cow position:chr26:22354596-22354410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:192-328
               
               
               Cow position:chr26:32565635-32565496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:192-348
               
               
               Cow position:chr26:15599344-15599503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):129, 72

               
               
               Conread position:192-365
               
               
               Cow position:chr26:34154317-34154138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr26:6865206-6865021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):137, 52

               
               
               Conread position:199-361
               
               
               Cow position:chr26:18137446-18137278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 151

               
               
               Conread position:202-328
               
               
               Cow position:chr26:26329081-26328956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 67

               
               
               Conread position:204-371
               
               
               Cow position:chr26:33526850-33527016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):146, 25

               
               
               Conread position:205-328
               
               
               Cow position:chr26:33691318-33691441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:206-372
               
               
               Cow position:chr26:30254467-30254636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:206-372
               
               
               Cow position:chr26:32553860-32553683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr26:829973-829802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr26:2739289-2739459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:207-372
               
               
               Cow position:chr26:9099362-9099534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 161

               
               
               Conread position:208-372
               
               
               Cow position:chr26:32571459-32571290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):122, 8

               
               
               Conread position:209-372
               
               
               Cow position:chr26:26294028-26294195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:210-328
               
               
               Cow position:chr26:107193-107072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:210-329
               
               
               Cow position:chr26:14175446-14175328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:210-347
               
               
               Cow position:chr26:32825836-32825976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:210-371
               
               
               Cow position:chr26:23599635-23599800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 69

               
               
               Conread position:210-372
               
               
               Cow position:chr26:7314942-7315110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr26:8699886-8700050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:210-372
               
               
               Cow position:chr26:9104114-9104284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr26:11263804-11263638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:210-372
               
               
               Cow position:chr26:13818588-13818419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 56

               
               
               Conread position:210-372
               
               
               Cow position:chr26:32776348-32776509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):140, 25

               
               
               Conread position:211-348
               
               
               Cow position:chr26:34040708-34040578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:211-365
               
               
               Cow position:chr26:19774136-19774295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):115, 39

               
               
               Conread position:213-372
               
               
               Cow position:chr26:17398736-17398573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:214-372
               
               
               Cow position:chr26:24453750-24453910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:215-329
               
               
               Cow position:chr26:31605566-31605452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr26:16435497-16435659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:215-372
               
               
               Cow position:chr26:32836396-32836236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:216-327
               
               
               Cow position:chr26:13705619-13705729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:216-363
               
               
               Cow position:chr26:33392553-33392400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr26:9839391-9839546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:216-372
               
               
               Cow position:chr26:16594343-16594502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:217-355
               
               
               Cow position:chr26:8187035-8186900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 34

               
               
               Conread position:218-372
               
               
               Cow position:chr26:3706948-3706789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:218-372
               
               
               Cow position:chr26:24240834-24240677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:219-369
               
               
               Cow position:chr26:27491345-27491498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr26:32834424-32834580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:220-379
               
               
               Cow position:chr26:22901110-22901271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:221-348
               
               
               Cow position:chr26:6823313-6823182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 91

               
               
               Conread position:221-369
               
               
               Cow position:chr26:32120778-32120634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr26:26245019-26245123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr26:27482413-27482519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-343
               
               
               Cow position:chr26:28245021-28245140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:222-366
               
               
               Cow position:chr26:9501861-9501712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr26:4807707-4807555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:222-372
               
               
               Cow position:chr26:11672450-11672294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr26:29664004-29664162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr26:31633881-31633725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr26:32601505-32601348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 146

               
               
               Conread position:222-372
               
               
               Cow position:chr26:34026884-34027038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-376
               
               
               Cow position:chr26:19671627-19671471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 46

               
               
               Conread position:224-372
               
               
               Cow position:chr26:4585062-4585213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr26:23097043-23097183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr26:34060485-34060330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:225-328
               
               
               Cow position:chr26:23106278-23106381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-365
               
               
               Cow position:chr26:20291543-20291688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr26:4854693-4854542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 67

               
               
               Conread position:226-372
               
               
               Cow position:chr26:5168542-5168395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):124, 95

               
               
               Conread position:226-372
               
               
               Cow position:chr26:6714153-6714303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr26:8353118-8352966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr26:13828213-13828072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):121, 51

               
               
               Conread position:226-372
               
               
               Cow position:chr26:29889365-29889514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr26:33253167-33253319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:227-363
               
               
               Cow position:chr26:16796062-16796200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr26:15200368-15200517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr26:12893280-12893430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:228-389
               
               
               Cow position:chr26:16922085-16921919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:228-393
               
               
               Cow position:chr26:25526396-25526226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):96, 151

               
               
               Conread position:230-348
               
               
               Cow position:chr26:32503197-32503312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:230-366
               
               
               Cow position:chr26:8478727-8478867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr26:21243234-21243099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:235-370
               
               
               Cow position:chr26:22348872-22349013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:236-361
               
               
               Cow position:chr26:5407118-5406987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr26:20551282-20551145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr26:28374305-28374446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr26:32058779-32058649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:243-372
               
               
               Cow position:chr26:25074849-25074714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr26:8643071-8642945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):91, 79

               
               
               Conread position:246-372
               
               
               Cow position:chr26:5985688-5985815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:250-372
               
               
               Cow position:chr26:26466607-26466731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:160-325
               
               
               Cow position:chr27:26503098-26502935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:160-334
               
               
               Cow position:chr27:17927346-17927178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):162, 74

               
               
               Conread position:160-345
               
               
               Cow position:chr27:27673249-27673074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:160-363
               
               
               Cow position:chr27:11466707-11466498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 102

               
               
               Conread position:160-367
               
               
               Cow position:chr27:22723940-22723722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr27:25372607-25372400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:176-372
               
               
               Cow position:chr27:30359183-30359383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):155, 57

               
               
               Conread position:192-323
               
               
               Cow position:chr27:23489071-23488939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:192-348
               
               
               Cow position:chr27:16237419-16237577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):138, 51

               
               
               Conread position:192-371
               
               
               Cow position:chr27:19755887-19756071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:193-372
               
               
               Cow position:chr27:15215018-15215205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:194-351
               
               
               Cow position:chr27:17918922-17918764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:198-346
               
               
               Cow position:chr27:29658918-29658767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:205-372
               
               
               Cow position:chr27:29319215-29319387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):124, 56

               
               
               Conread position:206-370
               
               
               Cow position:chr27:18923028-18922859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):124, 113

               
               
               Conread position:207-324
               
               
               Cow position:chr27:22348295-22348412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 60

               
               
               Conread position:207-388
               
               
               Cow position:chr27:2957218-2957398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:209-347
               
               
               Cow position:chr27:13903107-13902971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:210-347
               
               
               Cow position:chr27:20543530-20543667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 35

               
               
               Conread position:210-351
               
               
               Cow position:chr27:20795601-20795743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:210-357
               
               
               Cow position:chr27:27255796-27255949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:210-365
               
               
               Cow position:chr27:16589894-16589733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:210-369
               
               
               Cow position:chr27:30489602-30489437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr27:6302659-6302492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):106, 91

               
               
               Conread position:210-372
               
               
               Cow position:chr27:22454968-22454799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr27:28290673-28290831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr27:30908482-30908648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:210-372
               
               
               Cow position:chr27:30988606-30988773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:210-375
               
               
               Cow position:chr27:20336910-20337075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):120, 130

               
               
               Conread position:210-393
               
               
               Cow position:chr27:19717723-19717904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):129, 136

               
               
               Conread position:211-346
               
               
               Cow position:chr27:15378664-15378531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:211-372
               
               
               Cow position:chr27:7731446-7731281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):116, 43

               
               
               Conread position:211-372
               
               
               Cow position:chr27:16088613-16088783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:211-372
               
               
               Cow position:chr27:27064630-27064463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:213-348
               
               
               Cow position:chr27:22268040-22268175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr27:29593815-29593653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:214-355
               
               
               Cow position:chr27:28039030-28038891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):126, 37

               
               
               Conread position:214-368
               
               
               Cow position:chr27:4386249-4386089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 136

               
               
               Conread position:214-372
               
               
               Cow position:chr27:1353395-1353559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr27:14957912-14957753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:215-372
               
               
               Cow position:chr27:17918499-17918337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 10

               
               
               Conread position:216-330
               
               
               Cow position:chr27:590946-590834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:216-370
               
               
               Cow position:chr27:6550278-6550433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):115, 121

               
               
               Conread position:216-372
               
               
               Cow position:chr27:7649769-7649605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr27:22603000-22603155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 103

               
               
               Conread position:216-372
               
               
               Cow position:chr27:31018011-31017853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:217-367
               
               
               Cow position:chr27:6674096-6674250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:218-348
               
               
               Cow position:chr27:13801627-13801759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:218-363
               
               
               Cow position:chr27:26323265-26323415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr27:24303763-24303922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):104, 132

               
               
               Conread position:220-356
               
               
               Cow position:chr27:27551134-27550993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):108, 41

               
               
               Conread position:220-363
               
               
               Cow position:chr27:19452822-19452969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:220-365
               
               
               Cow position:chr27:19508831-19508982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr27:212774-212933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr27:22560005-22559851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr27:25809696-25809543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:222-348
               
               
               Cow position:chr27:232374-232504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:222-351
               
               
               Cow position:chr27:26980142-26980013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):122, 117

               
               
               Conread position:222-364
               
               
               Cow position:chr27:26481373-26481227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 80

               
               
               Conread position:222-365
               
               
               Cow position:chr27:10979683-10979832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:222-369
               
               
               Cow position:chr27:23554506-23554356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 80

               
               
               Conread position:222-370
               
               
               Cow position:chr27:6924905-6925059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr27:30914830-30914983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr27:7973998-7974148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:222-371
               
               
               Cow position:chr27:29831881-29831722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr27:2592360-2592519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr27:5553290-5553445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr27:16965397-16965548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:222-372
               
               
               Cow position:chr27:18558181-18558333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr27:22423337-22423492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:222-372
               
               
               Cow position:chr27:23147986-23148142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr27:23859986-23860137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):117, 56

               
               
               Conread position:222-372
               
               
               Cow position:chr27:25151912-25152061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:222-372
               
               
               Cow position:chr27:26112095-26111938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr27:28518116-28518274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr27:28896701-28896858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr27:29380675-29380829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-373
               
               
               Cow position:chr27:10323666-10323814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:222-373
               
               
               Cow position:chr27:20514643-20514796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:222-390
               
               
               Cow position:chr27:20045714-20045882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 153

               
               
               Conread position:223-372
               
               
               Cow position:chr27:15343456-15343303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr27:27641189-27641036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 41

               
               
               Conread position:224-327
               
               
               Cow position:chr27:11528753-11528856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-327
               
               
               Cow position:chr27:23495886-23495784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:224-331
               
               
               Cow position:chr27:21951157-21951049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:224-367
               
               
               Cow position:chr27:8062528-8062379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:224-372
               
               
               Cow position:chr27:7935335-7935180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr27:27039016-27038865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr27:1789315-1789163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr27:18491381-18491482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:226-329
               
               
               Cow position:chr27:9253289-9253186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-342
               
               
               Cow position:chr27:26087140-26087256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-365
               
               
               Cow position:chr27:23452286-23452430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr27:14303563-14303713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:227-372
               
               
               Cow position:chr27:26509328-26509182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):100, 65

               
               
               Conread position:228-348
               
               
               Cow position:chr27:26400895-26400771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr27:1291022-1290875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:228-372
               
               
               Cow position:chr27:15315345-15315493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr27:15865433-15865583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr27:18435307-18435157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr27:23895251-23895396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):110, 93

               
               
               Conread position:228-372
               
               
               Cow position:chr27:25276970-25277116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:228-372
               
               
               Cow position:chr27:31386807-31386654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:228-390
               
               
               Cow position:chr27:299553-299386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:229-375
               
               
               Cow position:chr27:17646341-17646189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:229-389
               
               
               Cow position:chr27:20812732-20812899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:230-362
               
               
               Cow position:chr27:6541460-6541598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:230-369
               
               
               Cow position:chr27:17397626-17397481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:230-371
               
               
               Cow position:chr27:16705079-16705226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr27:19546678-19546538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:234-373
               
               
               Cow position:chr27:20749179-20749037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:235-347
               
               
               Cow position:chr27:1804577-1804465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-368
               
               
               Cow position:chr27:29431302-29431436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 93

               
               
               Conread position:235-372
               
               
               Cow position:chr27:9977514-9977661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr27:29388505-29388648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:237-371
               
               
               Cow position:chr27:21393671-21393532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):90, 8

               
               
               Conread position:237-372
               
               
               Cow position:chr27:12246490-12246629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:238-370
               
               
               Cow position:chr27:12596613-12596745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 99

               
               
               Conread position:239-372
               
               
               Cow position:chr27:12191642-12191503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:240-371
               
               
               Cow position:chr27:28260697-28260561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr27:8790905-8790765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:248-372
               
               
               Cow position:chr27:10992203-10992329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:254-372
               
               
               Cow position:chr27:18593125-18593245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:160-328
               
               
               Cow position:chr28:6971145-6971313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:160-366
               
               
               Cow position:chr28:4841189-4841402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):160, 31

               
               
               Conread position:160-372
               
               
               Cow position:chr28:19079646-19079860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:162-359
               
               
               Cow position:chr28:17398032-17398236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:167-346
               
               
               Cow position:chr28:29041850-29042041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:167-371
               
               
               Cow position:chr28:32179893-32179683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:175-372
               
               
               Cow position:chr28:31109813-31110019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:176-359
               
               
               Cow position:chr28:17414287-17414477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:176-372
               
               
               Cow position:chr28:7267756-7267958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:176-372
               
               
               Cow position:chr28:19025818-19026020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:177-372
               
               
               Cow position:chr28:20313462-20313262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):143, 15

               
               
               Conread position:185-348
               
               
               Cow position:chr28:2743260-2743092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:185-372
               
               
               Cow position:chr28:16110115-16109924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 85

               
               
               Conread position:192-327
               
               
               Cow position:chr28:8258995-8258860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:192-349
               
               
               Cow position:chr28:18533736-18533896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):138, 62

               
               
               Conread position:192-369
               
               
               Cow position:chr28:7497976-7498159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):85, 76

               
               
               Conread position:193-372
               
               
               Cow position:chr28:7388600-7388782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):25, 153

               
               
               Conread position:193-372
               
               
               Cow position:chr28:10053154-10053344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:195-366
               
               
               Cow position:chr28:18797488-18797311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:195-372
               
               
               Cow position:chr28:5867884-5867712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):135, 50

               
               
               Conread position:197-348
               
               
               Cow position:chr28:31876657-31876809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 55

               
               
               Conread position:198-372
               
               
               Cow position:chr28:27161164-27161341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:198-372
               
               
               Cow position:chr28:33052199-33052020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:201-372
               
               
               Cow position:chr28:2752334-2752509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:206-372
               
               
               Cow position:chr28:25677183-25677357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:208-347
               
               
               Cow position:chr28:25195858-25195716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:208-372
               
               
               Cow position:chr28:29434273-29434443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-324
               
               
               Cow position:chr28:23641111-23641226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:210-349
               
               
               Cow position:chr28:12385141-12385283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):117, 40

               
               
               Conread position:210-352
               
               
               Cow position:chr28:19024586-19024440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:211-328
               
               
               Cow position:chr28:11365377-11365492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:211-347
               
               
               Cow position:chr28:9418813-9418954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 15

               
               
               Conread position:211-347
               
               
               Cow position:chr28:20013593-20013447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr28:2772862-2772698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):113, 73

               
               
               Conread position:211-372
               
               
               Cow position:chr28:4355698-4355530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 61

               
               
               Conread position:211-372
               
               
               Cow position:chr28:4873195-4873360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:211-372
               
               
               Cow position:chr28:18354175-18354343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):67, 114

               
               
               Conread position:212-371
               
               
               Cow position:chr28:1632506-1632666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):118, 141

               
               
               Conread position:212-372
               
               
               Cow position:chr28:18770228-18770069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 10

               
               
               Conread position:213-325
               
               
               Cow position:chr28:25518616-25518727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr28:8149482-8149647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr28:24707046-24706882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr28:32174778-32174614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):116, 153

               
               
               Conread position:215-372
               
               
               Cow position:chr28:10495153-10495313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:216-365
               
               
               Cow position:chr28:24064752-24064903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:216-372
               
               
               Cow position:chr28:2899136-2898974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr28:7437326-7437477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:217-370
               
               
               Cow position:chr28:19222004-19222163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:217-372
               
               
               Cow position:chr28:25400015-25399858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:217-372
               
               
               Cow position:chr28:34247885-34248044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:219-370
               
               
               Cow position:chr28:4823750-4823591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:220-322
               
               
               Cow position:chr28:3759133-3759031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-322
               
               
               Cow position:chr28:29500543-29500441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-331
               
               
               Cow position:chr28:9927758-9927868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:220-389
               
               
               Cow position:chr28:26743769-26743592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr28:6059328-6059485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-344
               
               
               Cow position:chr28:11827826-11827703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-348
               
               
               Cow position:chr28:4022814-4022684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:222-365
               
               
               Cow position:chr28:8827302-8827157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr28:11828821-11828968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:222-369
               
               
               Cow position:chr28:15601417-15601265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr28:17739963-17739812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr28:27218463-27218309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 80

               
               
               Conread position:222-372
               
               
               Cow position:chr28:3011129-3011284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 93

               
               
               Conread position:222-372
               
               
               Cow position:chr28:7697841-7697993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr28:11307376-11307533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr28:13048143-13048298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:222-372
               
               
               Cow position:chr28:17680763-17680607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr28:19015843-19015701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr28:19294995-19295144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:222-372
               
               
               Cow position:chr28:20397230-20397385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:222-372
               
               
               Cow position:chr28:21363881-21363732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):115, 106

               
               
               Conread position:222-372
               
               
               Cow position:chr28:26982597-26982753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr28:34230369-34230213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:223-348
               
               
               Cow position:chr28:19994809-19994935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:223-363
               
               
               Cow position:chr28:26826359-26826217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:223-367
               
               
               Cow position:chr28:19038879-19039029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr28:5144381-5144536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-328
               
               
               Cow position:chr28:26269525-26269421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-348
               
               
               Cow position:chr28:8167215-8167339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr28:11559493-11559646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr28:3726071-3726226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:225-365
               
               
               Cow position:chr28:2131786-2131932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):52, 44

               
               
               Conread position:225-372
               
               
               Cow position:chr28:25728331-25728184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:226-328
               
               
               Cow position:chr28:5204332-5204230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-370
               
               
               Cow position:chr28:5236012-5235868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:226-372
               
               
               Cow position:chr28:12951554-12951408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):124, 102

               
               
               Conread position:227-370
               
               
               Cow position:chr28:11866529-11866678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:228-322
               
               
               Cow position:chr28:24726302-24726396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-326
               
               
               Cow position:chr28:26960775-26960872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr28:15362716-15362567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr28:4881105-4881255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-389
               
               
               Cow position:chr28:5931484-5931324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:230-372
               
               
               Cow position:chr28:2819908-2819760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr28:23047751-23047605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:233-348
               
               
               Cow position:chr28:13269857-13269742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-369
               
               
               Cow position:chr28:17948983-17949125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:234-345
               
               
               Cow position:chr28:8681301-8681413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:234-366
               
               
               Cow position:chr28:10615817-10615955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:234-371
               
               
               Cow position:chr28:3143749-3143889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr28:4765804-4765659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:234-372
               
               
               Cow position:chr28:10297980-10297841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr28:17601425-17601569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr28:19216950-19216807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr28:21008538-21008680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:234-372
               
               
               Cow position:chr28:21355360-21355217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 139

               
               
               Conread position:234-372
               
               
               Cow position:chr28:23410194-23410340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr28:19564102-19564243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 25

               
               
               Conread position:235-372
               
               
               Cow position:chr28:25249482-25249339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:236-335
               
               
               Cow position:chr28:25423889-25423989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:238-370
               
               
               Cow position:chr28:26719468-26719330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:240-348
               
               
               Cow position:chr28:10247611-10247500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:241-352
               
               
               Cow position:chr28:16692045-16691928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:255-372
               
               
               Cow position:chr28:32365952-32365829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:89-334
               
               
               Cow position:chr29:935181-934943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):82, 63

               
               
               Conread position:160-345
               
               
               Cow position:chr29:11673357-11673171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 145

               
               
               Conread position:160-372
               
               
               Cow position:chr29:40298822-40299042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:176-328
               
               
               Cow position:chr29:32301931-32301779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-370
               
               
               Cow position:chr29:26319347-26319149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:178-372
               
               
               Cow position:chr29:6293303-6293500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:181-351
               
               
               Cow position:chr29:3590641-3590466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:184-360
               
               
               Cow position:chr29:18579666-18579846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:185-334
               
               
               Cow position:chr29:683319-683467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:191-347
               
               
               Cow position:chr29:17436914-17436756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:191-348
               
               
               Cow position:chr29:16672655-16672495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:192-369
               
               
               Cow position:chr29:10156142-10156320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 103

               
               
               Conread position:192-371
               
               
               Cow position:chr29:16365720-16365910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr29:38581143-38580958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:194-328
               
               
               Cow position:chr29:17022312-17022178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-372
               
               
               Cow position:chr29:11053699-11053881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:194-372
               
               
               Cow position:chr29:24252399-24252217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:198-340
               
               
               Cow position:chr29:26764521-26764378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:198-369
               
               
               Cow position:chr29:11527638-11527808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:198-372
               
               
               Cow position:chr29:11042586-11042410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:199-372
               
               
               Cow position:chr29:13372820-13372642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 70

               
               
               Conread position:204-437
               
               
               Cow position:chr29:32290764-32290524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 191

               
               
               Conread position:205-372
               
               
               Cow position:chr29:27858939-27858773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 132

               
               
               Conread position:207-370
               
               
               Cow position:chr29:3293097-3292928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:208-372
               
               
               Cow position:chr29:11647242-11647073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):119, 153

               
               
               Conread position:208-372
               
               
               Cow position:chr29:39329455-39329625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr29:19059937-19060054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr29:19061629-19061746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr29:35070938-35071056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-330
               
               
               Cow position:chr29:22175829-22175707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:210-333
               
               
               Cow position:chr29:2533426-2533307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:210-365
               
               
               Cow position:chr29:32210924-32211081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:210-371
               
               
               Cow position:chr29:1022441-1022275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:210-372
               
               
               Cow position:chr29:2262849-2263014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr29:6286015-6286183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:210-372
               
               
               Cow position:chr29:6844486-6844654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr29:8926315-8926483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr29:11397781-11397947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 43

               
               
               Conread position:210-372
               
               
               Cow position:chr29:13373447-13373275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr29:40097109-40096944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:211-328
               
               
               Cow position:chr29:23243733-23243850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:211-343
               
               
               Cow position:chr29:27042188-27042058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:211-348
               
               
               Cow position:chr29:2730148-2730282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:211-365
               
               
               Cow position:chr29:847497-847657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):97, 121

               
               
               Conread position:211-372
               
               
               Cow position:chr29:22518983-22519149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:212-329
               
               
               Cow position:chr29:28949117-28949001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:212-355
               
               
               Cow position:chr29:703070-703218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):115, 59

               
               
               Conread position:213-319
               
               
               Cow position:chr29:7040729-7040835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:213-371
               
               
               Cow position:chr29:42771778-42771626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr29:13867068-13867232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:214-328
               
               
               Cow position:chr29:33393820-33393706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-371
               
               
               Cow position:chr29:13028582-13028423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr29:27668522-27668682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:214-372
               
               
               Cow position:chr29:32799571-32799727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:215-327
               
               
               Cow position:chr29:2522896-2522785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:215-348
               
               
               Cow position:chr29:34760276-34760409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-371
               
               
               Cow position:chr29:13639227-13639388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:215-372
               
               
               Cow position:chr29:5994955-5995116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:216-328
               
               
               Cow position:chr29:26631181-26631069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-348
               
               
               Cow position:chr29:40615355-40615489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr29:12783823-12783982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:216-372
               
               
               Cow position:chr29:25088882-25088724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:217-372
               
               
               Cow position:chr29:8163688-8163849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr29:28775324-28775481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:218-365
               
               
               Cow position:chr29:30681573-30681725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:218-369
               
               
               Cow position:chr29:29324288-29324439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):104, 76

               
               
               Conread position:218-372
               
               
               Cow position:chr29:40583921-40583771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:220-334
               
               
               Cow position:chr29:27042408-27042294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-348
               
               
               Cow position:chr29:629674-629542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:220-352
               
               
               Cow position:chr29:18748256-18748387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:220-367
               
               
               Cow position:chr29:24051248-24051398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:221-328
               
               
               Cow position:chr29:8190065-8190172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:221-366
               
               
               Cow position:chr29:34359687-34359836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:221-372
               
               
               Cow position:chr29:11915955-11915805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 46

               
               
               Conread position:221-372
               
               
               Cow position:chr29:19428795-19428637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):79, 51

               
               
               Conread position:222-328
               
               
               Cow position:chr29:17663626-17663733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:222-365
               
               
               Cow position:chr29:16200344-16200493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr29:21443204-21443357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr29:32656568-32656414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr29:5520352-5520506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:222-372
               
               
               Cow position:chr29:501333-501177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr29:12025344-12025489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):114, 12

               
               
               Conread position:222-372
               
               
               Cow position:chr29:15947301-15947145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr29:16609882-16609726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr29:24187931-24188087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr29:30441071-30440912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:222-372
               
               
               Cow position:chr29:34745525-34745679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:222-372
               
               
               Cow position:chr29:36357260-36357107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:222-389
               
               
               Cow position:chr29:17297270-17297095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:223-347
               
               
               Cow position:chr29:18878348-18878476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:223-349
               
               
               Cow position:chr29:27487319-27487194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:223-371
               
               
               Cow position:chr29:1219998-1220152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr29:4520467-4520318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 37

               
               
               Conread position:223-372
               
               
               Cow position:chr29:42630252-42630099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 45

               
               
               Conread position:224-332
               
               
               Cow position:chr29:2219519-2219410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:224-341
               
               
               Cow position:chr29:43088438-43088322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:224-348
               
               
               Cow position:chr29:19187158-19187030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr29:44684229-44684082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr29:6636208-6636063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:224-372
               
               
               Cow position:chr29:7103690-7103536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr29:23874592-23874438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr29:29057308-29057157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr29:31929119-31928967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 78

               
               
               Conread position:224-372
               
               
               Cow position:chr29:41530983-41530828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:226-325
               
               
               Cow position:chr29:10191908-10192009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:226-365
               
               
               Cow position:chr29:17110087-17109945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:226-367
               
               
               Cow position:chr29:25092236-25092097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:226-369
               
               
               Cow position:chr29:19949437-19949290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:226-371
               
               
               Cow position:chr29:109812-109674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr29:24624379-24624228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:227-372
               
               
               Cow position:chr29:31934508-31934357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr29:32926232-32926082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 6

               
               
               Conread position:228-371
               
               
               Cow position:chr29:4070752-4070607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr29:21645437-21645297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 64

               
               
               Conread position:228-371
               
               
               Cow position:chr29:28166094-28166240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr29:1325566-1325421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):125, 14

               
               
               Conread position:228-372
               
               
               Cow position:chr29:2056189-2056039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr29:16279109-16278966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:231-371
               
               
               Cow position:chr29:28979378-28979519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:231-372
               
               
               Cow position:chr29:396531-396391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 93

               
               
               Conread position:231-372
               
               
               Cow position:chr29:40994766-40994912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:231-373
               
               
               Cow position:chr29:37599095-37599233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:233-369
               
               
               Cow position:chr29:39567803-39567667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:233-372
               
               
               Cow position:chr29:7310796-7310655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:233-372
               
               
               Cow position:chr29:31981955-31981809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:234-365
               
               
               Cow position:chr29:21592828-21592693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:234-369
               
               
               Cow position:chr29:34517369-34517502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:234-370
               
               
               Cow position:chr29:706835-706969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:234-388
               
               
               Cow position:chr29:4085431-4085275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:235-363
               
               
               Cow position:chr29:36781183-36781317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-369
               
               
               Cow position:chr29:36217233-36217096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:235-371
               
               
               Cow position:chr29:40791424-40791289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr29:4423318-4423461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr29:5789149-5789007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:236-372
               
               
               Cow position:chr29:43544483-43544624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr29:28195402-28195537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr29:8004809-8004944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:239-370
               
               
               Cow position:chr29:25333344-25333479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:239-389
               
               
               Cow position:chr29:10653449-10653303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr29:17154894-17154757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr29:22936387-22936250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr29:6015237-6015102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):85, 92

               
               
               Conread position:246-369
               
               
               Cow position:chr29:39508361-39508245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:254-372
               
               
               Cow position:chr29:8686432-8686308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:85-372
               
               
               Cow position:chr3:14599185-14598905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:85-372
               
               
               Cow position:chr3:76267714-76268019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 67

               
               
               Conread position:160-328
               
               
               Cow position:chr3:15173263-15173087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:160-328
               
               
               Cow position:chr3:28555998-28556156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:160-348
               
               
               Cow position:chr3:15682974-15683166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:160-356
               
               
               Cow position:chr3:35285216-35285015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):167, 32

               
               
               Conread position:160-372
               
               
               Cow position:chr3:31850212-31850417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:162-328
               
               
               Cow position:chr3:44330269-44330431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:162-372
               
               
               Cow position:chr3:12711746-12711959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:168-307
               
               
               Cow position:chr3:48578968-48578831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:168-335
               
               
               Cow position:chr3:83482476-83482311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):148, 14

               
               
               Conread position:169-372
               
               
               Cow position:chr3:59692060-59691847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:170-330
               
               
               Cow position:chr3:76360584-76360742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:173-369
               
               
               Cow position:chr3:70900049-70899852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):157, 60

               
               
               Conread position:176-328
               
               
               Cow position:chr3:20175208-20175054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:176-328
               
               
               Cow position:chr3:27670570-27670419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:176-328
               
               
               Cow position:chr3:81547257-81547109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:176-373
               
               
               Cow position:chr3:11705411-11705206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:177-319
               
               
               Cow position:chr3:44243673-44243535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:177-327
               
               
               Cow position:chr3:52634261-52634115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:177-372
               
               
               Cow position:chr3:57624621-57624420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:180-364
               
               
               Cow position:chr3:26874745-26874560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):71, 161

               
               
               Conread position:181-333
               
               
               Cow position:chr3:26230264-26230109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:181-372
               
               
               Cow position:chr3:60597693-60597500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:185-328
               
               
               Cow position:chr3:2179268-2179125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 130

               
               
               Conread position:185-328
               
               
               Cow position:chr3:53256674-53256534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:191-372
               
               
               Cow position:chr3:26921059-26920865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:192-328
               
               
               Cow position:chr3:82629459-82629322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:192-348
               
               
               Cow position:chr3:78201752-78201592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:192-352
               
               
               Cow position:chr3:66668157-66668316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:192-369
               
               
               Cow position:chr3:17447473-17447653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr3:10104179-10103997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:192-372
               
               
               Cow position:chr3:17934795-17934982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:192-374
               
               
               Cow position:chr3:15506593-15506403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 75

               
               
               Conread position:193-328
               
               
               Cow position:chr3:13507609-13507474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:193-329
               
               
               Cow position:chr3:20719169-20719305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-372
               
               
               Cow position:chr3:48241756-48241575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:193-372
               
               
               Cow position:chr3:81470959-81471140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):132, 41

               
               
               Conread position:194-361
               
               
               Cow position:chr3:59630375-59630542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):156, 51

               
               
               Conread position:194-369
               
               
               Cow position:chr3:53508751-53508570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):133, 155

               
               
               Conread position:195-372
               
               
               Cow position:chr3:21997647-21997832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:195-372
               
               
               Cow position:chr3:28258232-28258051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):132, 59

               
               
               Conread position:196-370
               
               
               Cow position:chr3:58968769-58968945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):134, 53

               
               
               Conread position:197-372
               
               
               Cow position:chr3:60389901-60389720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 5

               
               
               Conread position:198-346
               
               
               Cow position:chr3:14626014-14626164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:198-349
               
               
               Cow position:chr3:61133772-61133620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:198-351
               
               
               Cow position:chr3:16177105-16177265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:198-367
               
               
               Cow position:chr3:82360402-82360244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:199-348
               
               
               Cow position:chr3:48296834-48296683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:199-372
               
               
               Cow position:chr3:61467058-61467234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:201-371
               
               
               Cow position:chr3:32457324-32457151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:202-372
               
               
               Cow position:chr3:53739052-53739229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 148

               
               
               Conread position:203-372
               
               
               Cow position:chr3:35621433-35621261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr3:65019726-65019909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:208-323
               
               
               Cow position:chr3:26565599-26565714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:208-328
               
               
               Cow position:chr3:28691791-28691912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:208-370
               
               
               Cow position:chr3:61279034-61278869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:208-371
               
               
               Cow position:chr3:36914179-36914007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr3:78945715-78945875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:210-309
               
               
               Cow position:chr3:58486260-58486358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:210-327
               
               
               Cow position:chr3:75772922-75772802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr3:4086739-4086858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr3:22716172-22716292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:210-334
               
               
               Cow position:chr3:43428897-43428773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 95

               
               
               Conread position:210-335
               
               
               Cow position:chr3:57067733-57067607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:210-348
               
               
               Cow position:chr3:25692149-25692011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-353
               
               
               Cow position:chr3:42775920-42776064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:210-369
               
               
               Cow position:chr3:80072253-80072088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:210-372
               
               
               Cow position:chr3:33329943-33329773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr3:70402020-70401853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:211-328
               
               
               Cow position:chr3:29413184-29413066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:211-334
               
               
               Cow position:chr3:82656834-82656955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:211-356
               
               
               Cow position:chr3:13949435-13949582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 112

               
               
               Conread position:211-369
               
               
               Cow position:chr3:59920151-59919991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:211-371
               
               
               Cow position:chr3:64373033-64373199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr3:49790689-49790855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 162

               
               
               Conread position:212-362
               
               
               Cow position:chr3:57445305-57445453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):129, 117

               
               
               Conread position:212-370
               
               
               Cow position:chr3:55984220-55984057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):104, 95

               
               
               Conread position:212-372
               
               
               Cow position:chr3:46305576-46305422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 66

               
               
               Conread position:212-372
               
               
               Cow position:chr3:48810524-48810689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):112, 39

               
               
               Conread position:212-372
               
               
               Cow position:chr3:53240377-53240218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:212-372
               
               
               Cow position:chr3:54100604-54100770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr3:77589636-77589475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):118, 140

               
               
               Conread position:213-366
               
               
               Cow position:chr3:8813993-8814150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:214-327
               
               
               Cow position:chr3:25702222-25702335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-348
               
               
               Cow position:chr3:73589653-73589789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:214-369
               
               
               Cow position:chr3:5305917-5305757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:214-372
               
               
               Cow position:chr3:4319826-4319667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 20

               
               
               Conread position:214-372
               
               
               Cow position:chr3:53703844-53704007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):113, 49

               
               
               Conread position:214-372
               
               
               Cow position:chr3:56704201-56704365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:214-372
               
               
               Cow position:chr3:61169919-61169760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):110, 72

               
               
               Conread position:214-372
               
               
               Cow position:chr3:73820253-73820412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):111, 22

               
               
               Conread position:215-341
               
               
               Cow position:chr3:6853418-6853545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:215-345
               
               
               Cow position:chr3:15660176-15660305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:215-370
               
               
               Cow position:chr3:2675148-2674987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:215-372
               
               
               Cow position:chr3:84175705-84175867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:216-347
               
               
               Cow position:chr3:39812171-39812034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:216-348
               
               
               Cow position:chr3:45314461-45314326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:216-372
               
               
               Cow position:chr3:21642105-21641944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr3:53318519-53318357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:216-372
               
               
               Cow position:chr3:80581771-80581618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):134, 27

               
               
               Conread position:217-333
               
               
               Cow position:chr3:58540407-58540519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:217-342
               
               
               Cow position:chr3:4518068-4518191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr3:16254726-16254878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:217-372
               
               
               Cow position:chr3:20515701-20515862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 65

               
               
               Conread position:217-372
               
               
               Cow position:chr3:53046546-53046703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr3:57764333-57764178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:218-328
               
               
               Cow position:chr3:21959775-21959665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-328
               
               
               Cow position:chr3:62186267-62186157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-364
               
               
               Cow position:chr3:15237581-15237727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):104, 73

               
               
               Conread position:218-372
               
               
               Cow position:chr3:2638042-2637882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr3:66900617-66900777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr3:83215378-83215218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:219-371
               
               
               Cow position:chr3:57877683-57877523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr3:30222307-30222146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:219-389
               
               
               Cow position:chr3:59621533-59621707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 131

               
               
               Conread position:220-372
               
               
               Cow position:chr3:7661966-7661812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr3:59828279-59828437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr3:74900527-74900684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:220-372
               
               
               Cow position:chr3:75045761-75045916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:220-374
               
               
               Cow position:chr3:16752145-16752304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):110, 101

               
               
               Conread position:221-323
               
               
               Cow position:chr3:68624329-68624228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr3:11229252-11229409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr3:58317835-58317992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr3:64010702-64010853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:221-372
               
               
               Cow position:chr3:65969282-65969123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr3:71497025-71497182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr3:79645317-79645480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:222-331
               
               
               Cow position:chr3:25060440-25060330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:222-345
               
               
               Cow position:chr3:2506367-2506488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:222-347
               
               
               Cow position:chr3:61023911-61024040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-368
               
               
               Cow position:chr3:49482603-49482757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr3:27976413-27976566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:222-370
               
               
               Cow position:chr3:73467747-73467589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr3:15443617-15443771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr3:53270942-53270787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr3:210431-210275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr3:3656627-3656470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr3:9025974-9026128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:222-372
               
               
               Cow position:chr3:9663060-9663216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr3:15973679-15973522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr3:18067244-18067097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr3:31309242-31309398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr3:48900221-48900376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr3:56678238-56678395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):99, 49

               
               
               Conread position:222-372
               
               
               Cow position:chr3:65058807-65058656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:222-372
               
               
               Cow position:chr3:68303427-68303272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 129

               
               
               Conread position:222-372
               
               
               Cow position:chr3:70334583-70334739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr3:74787540-74787387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:222-387
               
               
               Cow position:chr3:75238569-75238398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:223-328
               
               
               Cow position:chr3:83199621-83199517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:223-367
               
               
               Cow position:chr3:74134815-74134665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr3:15751602-15751756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:223-372
               
               
               Cow position:chr3:32150475-32150323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr3:59474232-59474078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:223-372
               
               
               Cow position:chr3:65413166-65413322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr3:81087528-81087680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:224-338
               
               
               Cow position:chr3:35582950-35582836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-362
               
               
               Cow position:chr3:46559605-46559749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:224-370
               
               
               Cow position:chr3:35624436-35624586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:224-372
               
               
               Cow position:chr3:2392860-2393006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):75, 10

               
               
               Conread position:224-372
               
               
               Cow position:chr3:10668770-10668923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:224-372
               
               
               Cow position:chr3:13301741-13301894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:224-372
               
               
               Cow position:chr3:23804614-23804472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr3:52651971-52652125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr3:55318789-55318944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:224-372
               
               
               Cow position:chr3:71231507-71231352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 94

               
               
               Conread position:224-372
               
               
               Cow position:chr3:73709156-73709003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:224-372
               
               
               Cow position:chr3:82366238-82366085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:224-385
               
               
               Cow position:chr3:45882008-45881841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr3:17058438-17058540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-329
               
               
               Cow position:chr3:52845664-52845561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-348
               
               
               Cow position:chr3:75966673-75966799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:226-359
               
               
               Cow position:chr3:20021377-20021238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:226-361
               
               
               Cow position:chr3:24596315-24596456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr3:14547108-14546958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 49

               
               
               Conread position:226-372
               
               
               Cow position:chr3:20841767-20841917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):98, 7

               
               
               Conread position:226-372
               
               
               Cow position:chr3:22221433-22221284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 8

               
               
               Conread position:226-372
               
               
               Cow position:chr3:27940035-27940182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 118

               
               
               Conread position:226-372
               
               
               Cow position:chr3:37041528-37041375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:227-348
               
               
               Cow position:chr3:44534428-44534549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:227-372
               
               
               Cow position:chr3:8733250-8733398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:227-372
               
               
               Cow position:chr3:23471351-23471503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr3:28908095-28908247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr3:68130185-68130327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:227-400
               
               
               Cow position:chr3:19793012-19792834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:228-369
               
               
               Cow position:chr3:48363178-48363035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 39

               
               
               Conread position:228-372
               
               
               Cow position:chr3:30180192-30180041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:228-372
               
               
               Cow position:chr3:59883964-59884113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:228-372
               
               
               Cow position:chr3:68587127-68586979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:228-372
               
               
               Cow position:chr3:72503790-72503940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:229-372
               
               
               Cow position:chr3:71423450-71423595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:230-371
               
               
               Cow position:chr3:15153795-15153648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr3:48477932-48478073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 61

               
               
               Conread position:230-372
               
               
               Cow position:chr3:55712544-55712396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:232-372
               
               
               Cow position:chr3:11640835-11640685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:233-328
               
               
               Cow position:chr3:54557775-54557680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr3:15228723-15228867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:233-372
               
               
               Cow position:chr3:51233994-51234138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr3:56476783-56476638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-369
               
               
               Cow position:chr3:5097306-5097166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:234-369
               
               
               Cow position:chr3:68707913-68708049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 110

               
               
               Conread position:234-369
               
               
               Cow position:chr3:80053444-80053582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:234-372
               
               
               Cow position:chr3:8393445-8393306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:234-372
               
               
               Cow position:chr3:14552975-14552831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr3:23753591-23753456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:234-372
               
               
               Cow position:chr3:24935464-24935321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:234-372
               
               
               Cow position:chr3:59000656-59000796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 78

               
               
               Conread position:234-372
               
               
               Cow position:chr3:63269323-63269179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:234-372
               
               
               Cow position:chr3:64280831-64280975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:234-372
               
               
               Cow position:chr3:67959822-67959960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:234-372
               
               
               Cow position:chr3:73299179-73299037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr3:84250444-84250586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:234-375
               
               
               Cow position:chr3:3889470-3889614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:235-368
               
               
               Cow position:chr3:41863724-41863584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-371
               
               
               Cow position:chr3:27727733-27727873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:235-371
               
               
               Cow position:chr3:58527481-58527345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):83, 101

               
               
               Conread position:235-372
               
               
               Cow position:chr3:56948989-56949132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr3:59597277-59597148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr3:81234488-81234345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:235-389
               
               
               Cow position:chr3:3985422-3985267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:235-389
               
               
               Cow position:chr3:33693918-33693760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:236-328
               
               
               Cow position:chr3:3401643-3401553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:236-328
               
               
               Cow position:chr3:60264618-60264710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:79
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-366
               
               
               Cow position:chr3:39873597-39873731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:236-372
               
               
               Cow position:chr3:39247924-39248068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr3:58767361-58767219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr3:73764101-73764238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:236-372
               
               
               Cow position:chr3:82056021-82056157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):133, 107

               
               
               Conread position:237-372
               
               
               Cow position:chr3:4050290-4050152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 122

               
               
               Conread position:237-372
               
               
               Cow position:chr3:7428095-7427958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:237-372
               
               
               Cow position:chr3:29360054-29360190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:237-372
               
               
               Cow position:chr3:57760595-57760454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:238-375
               
               
               Cow position:chr3:6873154-6873289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:240-348
               
               
               Cow position:chr3:32610354-32610246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-400
               
               
               Cow position:chr3:15192674-15192514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:241-370
               
               
               Cow position:chr3:34271007-34270875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:242-368
               
               
               Cow position:chr3:48252977-48252845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr3:69650797-69650933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:243-372
               
               
               Cow position:chr3:73395207-73395073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:246-372
               
               
               Cow position:chr3:11292160-11292292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:248-370
               
               
               Cow position:chr3:59101913-59101789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:248-372
               
               
               Cow position:chr3:34669647-34669771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):99, 92

               
               
               Conread position:248-372
               
               
               Cow position:chr3:38347276-38347149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:251-388
               
               
               Cow position:chr3:74502242-74502384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 138

               
               
               Conread position:257-372
               
               
               Cow position:chr3:81277391-81277512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:85-364
               
               
               Cow position:chr4:53833420-53833140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):183, 26

               
               
               Conread position:151-347
               
               
               Cow position:chr4:32272773-32272973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:160-327
               
               
               Cow position:chr4:7729247-7729413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:160-328
               
               
               Cow position:chr4:49826454-49826275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):73, 16

               
               
               Conread position:160-329
               
               
               Cow position:chr4:12904003-12903843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 40

               
               
               Conread position:160-331
               
               
               Cow position:chr4:13520695-13520857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr4:10056393-10056183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:160-372
               
               
               Cow position:chr4:11380464-11380256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):170, 16

               
               
               Conread position:160-372
               
               
               Cow position:chr4:19324159-19323947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):170, 29

               
               
               Conread position:160-372
               
               
               Cow position:chr4:65649941-65650157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 189

               
               
               Conread position:162-372
               
               
               Cow position:chr4:30792150-30791943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):162, 27

               
               
               Conread position:164-374
               
               
               Cow position:chr4:54854616-54854834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):161, 65

               
               
               Conread position:169-365
               
               
               Cow position:chr4:2051-1851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):161, 64

               
               
               Conread position:176-370
               
               
               Cow position:chr4:65950827-65950630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):149, 24

               
               
               Conread position:176-372
               
               
               Cow position:chr4:19098645-19098442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):149, 57

               
               
               Conread position:176-372
               
               
               Cow position:chr4:44782549-44782348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:176-372
               
               
               Cow position:chr4:50675995-50676197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:179-331
               
               
               Cow position:chr4:62987081-62987231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:181-322
               
               
               Cow position:chr4:16644966-16645104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:181-328
               
               
               Cow position:chr4:11194359-11194209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 91

               
               
               Conread position:182-331
               
               
               Cow position:chr4:46449867-46449720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:185-372
               
               
               Cow position:chr4:47348994-47348802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:186-327
               
               
               Cow position:chr4:9815182-9815323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:191-348
               
               
               Cow position:chr4:21874962-21874801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:191-372
               
               
               Cow position:chr4:41300838-41301020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:192-328
               
               
               Cow position:chr4:21532937-21533073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:194-328
               
               
               Cow position:chr4:58880805-58880938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:194-334
               
               
               Cow position:chr4:69398703-69398849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:194-372
               
               
               Cow position:chr4:65815550-65815732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:195-328
               
               
               Cow position:chr4:51477446-51477575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:196-367
               
               
               Cow position:chr4:27699186-27699010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:196-372
               
               
               Cow position:chr4:43740690-43740507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:197-347
               
               
               Cow position:chr4:57421204-57421057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:199-371
               
               
               Cow position:chr4:45367891-45367713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:199-372
               
               
               Cow position:chr4:46597518-46597352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:201-329
               
               
               Cow position:chr4:501535-501660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:201-372
               
               
               Cow position:chr4:19321928-19322105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:202-328
               
               
               Cow position:chr4:8083647-8083775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:204-328
               
               
               Cow position:chr4:12909486-12909610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:205-329
               
               
               Cow position:chr4:46435469-46435346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:206-331
               
               
               Cow position:chr4:14058814-14058692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:206-372
               
               
               Cow position:chr4:11496506-11496673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:206-372
               
               
               Cow position:chr4:22725232-22725075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:206-372
               
               
               Cow position:chr4:51920689-51920517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:207-326
               
               
               Cow position:chr4:20276849-20276730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:207-365
               
               
               Cow position:chr4:23846907-23847069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 58

               
               
               Conread position:207-370
               
               
               Cow position:chr4:12901415-12901583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):117, 7

               
               
               Conread position:207-372
               
               
               Cow position:chr4:35638758-35638930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:208-372
               
               
               Cow position:chr4:45013036-45013193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:208-372
               
               
               Cow position:chr4:48902484-48902652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:209-322
               
               
               Cow position:chr4:20115874-20115987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:209-351
               
               
               Cow position:chr4:11512568-11512712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):121, 42

               
               
               Conread position:209-372
               
               
               Cow position:chr4:45636308-45636139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:210-322
               
               
               Cow position:chr4:28570238-28570126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-324
               
               
               Cow position:chr4:12269931-12270044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr4:46275566-46275450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:210-328
               
               
               Cow position:chr4:65806036-65805918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-330
               
               
               Cow position:chr4:58389103-58389221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:210-341
               
               
               Cow position:chr4:26469793-26469662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-346
               
               
               Cow position:chr4:10472332-10472195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:210-348
               
               
               Cow position:chr4:5904629-5904489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:210-360
               
               
               Cow position:chr4:65265165-65265321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:210-370
               
               
               Cow position:chr4:19304487-19304319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr4:3397121-3396945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr4:19542273-19542111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):125, 133

               
               
               Conread position:210-372
               
               
               Cow position:chr4:25879531-25879370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr4:44613142-44612977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):115, 49

               
               
               Conread position:210-372
               
               
               Cow position:chr4:51784321-51784153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr4:63349350-63349512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):120, 58

               
               
               Conread position:210-372
               
               
               Cow position:chr4:69406486-69406325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):115, 59

               
               
               Conread position:210-375
               
               
               Cow position:chr4:46702517-46702688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:211-370
               
               
               Cow position:chr4:15462111-15462278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr4:41185780-41185937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):132, 103

               
               
               Conread position:211-372
               
               
               Cow position:chr4:45909838-45910004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 53

               
               
               Conread position:211-372
               
               
               Cow position:chr4:46591808-46591640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:212-328
               
               
               Cow position:chr4:5132471-5132356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:212-341
               
               
               Cow position:chr4:30845510-30845377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:212-343
               
               
               Cow position:chr4:5047006-5047142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:212-346
               
               
               Cow position:chr4:23808088-23807950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr4:13973831-13973998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr4:61313074-61313240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:213-338
               
               
               Cow position:chr4:54543527-54543653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:213-369
               
               
               Cow position:chr4:19700233-19700074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:213-371
               
               
               Cow position:chr4:20142774-20142932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):137, 84

               
               
               Conread position:213-372
               
               
               Cow position:chr4:32259705-32259872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr4:61757799-61757641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):140, 82

               
               
               Conread position:214-328
               
               
               Cow position:chr4:46761744-46761630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr4:54937218-54937104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:214-369
               
               
               Cow position:chr4:48381515-48381357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr4:18095536-18095695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:214-372
               
               
               Cow position:chr4:45589466-45589626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:214-372
               
               
               Cow position:chr4:45738338-45738503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr4:59871606-59871452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):136, 38

               
               
               Conread position:214-373
               
               
               Cow position:chr4:47280264-47280102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):113, 54

               
               
               Conread position:215-328
               
               
               Cow position:chr4:25802826-25802713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr4:19407862-19408024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):112, 82

               
               
               Conread position:215-372
               
               
               Cow position:chr4:28753755-28753604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr4:32726361-32726197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:216-328
               
               
               Cow position:chr4:33870209-33870097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-364
               
               
               Cow position:chr4:16762590-16762745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:216-369
               
               
               Cow position:chr4:65919743-65919587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:216-371
               
               
               Cow position:chr4:13222052-13222211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr4:19584838-19584689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr4:45582988-45583146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr4:54191223-54191063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):116, 8

               
               
               Conread position:216-372
               
               
               Cow position:chr4:64657168-64657319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):134, 50

               
               
               Conread position:217-328
               
               
               Cow position:chr4:34503429-34503318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:217-361
               
               
               Cow position:chr4:53819552-53819702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:217-369
               
               
               Cow position:chr4:38944126-38944280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:217-372
               
               
               Cow position:chr4:49800822-49800667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:218-328
               
               
               Cow position:chr4:51630914-51630805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:218-342
               
               
               Cow position:chr4:39458785-39458661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:218-372
               
               
               Cow position:chr4:17217997-17218152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:218-372
               
               
               Cow position:chr4:23444913-23445073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:218-372
               
               
               Cow position:chr4:36893493-36893332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:219-364
               
               
               Cow position:chr4:51769238-51769087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:220-345
               
               
               Cow position:chr4:45483929-45483800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:220-346
               
               
               Cow position:chr4:51708196-51708066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr4:2602361-2602208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 55

               
               
               Conread position:220-372
               
               
               Cow position:chr4:19102751-19102908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr4:19500962-19501119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:220-372
               
               
               Cow position:chr4:37313296-37313143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):130, 142

               
               
               Conread position:220-372
               
               
               Cow position:chr4:45775207-45775365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr4:66547638-66547795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 25

               
               
               Conread position:220-372
               
               
               Cow position:chr4:68391358-68391507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:221-328
               
               
               Cow position:chr4:39010180-39010072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:221-335
               
               
               Cow position:chr4:19420627-19420741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:221-369
               
               
               Cow position:chr4:22546711-22546865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:221-372
               
               
               Cow position:chr4:508780-508936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 24

               
               
               Conread position:221-372
               
               
               Cow position:chr4:37675742-37675591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:221-372
               
               
               Cow position:chr4:59378039-59377882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:222-323
               
               
               Cow position:chr4:23271411-23271310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-340
               
               
               Cow position:chr4:43909890-43909772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-363
               
               
               Cow position:chr4:19199158-19199305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 128

               
               
               Conread position:222-370
               
               
               Cow position:chr4:13326825-13326976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr4:38358696-38358846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:222-370
               
               
               Cow position:chr4:40995859-40995705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr4:12004343-12004191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr4:14020624-14020473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:222-372
               
               
               Cow position:chr4:22101136-22101292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr4:24371731-24371888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr4:26959841-26959996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:222-372
               
               
               Cow position:chr4:27632568-27632420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:222-372
               
               
               Cow position:chr4:28836663-28836509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:222-372
               
               
               Cow position:chr4:33181673-33181517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr4:34383213-34383368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr4:38946344-38946184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr4:44772914-44773070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr4:45250099-45249943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr4:45685586-45685430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr4:45706171-45706016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr4:46455940-46456092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:222-376
               
               
               Cow position:chr4:45213059-45213221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:223-371
               
               
               Cow position:chr4:16594210-16594058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr4:13941584-13941433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr4:26401082-26400930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:223-372
               
               
               Cow position:chr4:37502941-37502790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 95

               
               
               Conread position:223-372
               
               
               Cow position:chr4:44838767-44838919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:223-378
               
               
               Cow position:chr4:19539109-19539271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-328
               
               
               Cow position:chr4:59002013-59002116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:224-365
               
               
               Cow position:chr4:56591164-56591022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):126, 93

               
               
               Conread position:224-365
               
               
               Cow position:chr4:60527307-60527160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-369
               
               
               Cow position:chr4:13919104-13918957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr4:47038894-47038741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr4:20147310-20147156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr4:58248528-58248378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:224-388
               
               
               Cow position:chr4:38999550-38999377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:225-372
               
               
               Cow position:chr4:12591088-12591241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:225-389
               
               
               Cow position:chr4:45074187-45074019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:226-356
               
               
               Cow position:chr4:479668-479801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 5

               
               
               Conread position:226-372
               
               
               Cow position:chr4:12127514-12127666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:226-372
               
               
               Cow position:chr4:19578512-19578363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr4:47510509-47510362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 83

               
               
               Conread position:227-361
               
               
               Cow position:chr4:55694298-55694165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr4:12135803-12135954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:227-372
               
               
               Cow position:chr4:42231900-42232050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:228-328
               
               
               Cow position:chr4:17790169-17790269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-341
               
               
               Cow position:chr4:39092009-39091896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-342
               
               
               Cow position:chr4:34562504-34562393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:228-348
               
               
               Cow position:chr4:30769157-30769034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 69

               
               
               Conread position:228-348
               
               
               Cow position:chr4:53347854-53347971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:228-364
               
               
               Cow position:chr4:67393214-67393072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-368
               
               
               Cow position:chr4:61608842-61608988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-370
               
               
               Cow position:chr4:40414503-40414653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr4:10732345-10732197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):99, 23

               
               
               Conread position:228-371
               
               
               Cow position:chr4:13344661-13344512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr4:32693913-32693760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr4:50687743-50687888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:228-372
               
               
               Cow position:chr4:54920967-54921114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr4:56239736-56239887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:229-334
               
               
               Cow position:chr4:4320869-4320974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-371
               
               
               Cow position:chr4:19456565-19456713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:230-348
               
               
               Cow position:chr4:61268311-61268192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:231-341
               
               
               Cow position:chr4:61286664-61286554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:231-372
               
               
               Cow position:chr4:37935166-37935312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:233-372
               
               
               Cow position:chr4:4084332-4084477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr4:49794776-49794639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:233-374
               
               
               Cow position:chr4:46560302-46560151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):8, 65

               
               
               Conread position:234-346
               
               
               Cow position:chr4:16070560-16070672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 63

               
               
               Conread position:234-371
               
               
               Cow position:chr4:45626511-45626653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:234-372
               
               
               Cow position:chr4:29384118-29384259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr4:39128654-39128515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):116, 90

               
               
               Conread position:234-375
               
               
               Cow position:chr4:21553969-21554111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:235-345
               
               
               Cow position:chr4:56805292-56805182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-364
               
               
               Cow position:chr4:34983383-34983515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:235-369
               
               
               Cow position:chr4:41370823-41370965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:235-369
               
               
               Cow position:chr4:60141406-60141541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr4:53126226-53126087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:236-372
               
               
               Cow position:chr4:65175030-65175172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr4:46136863-46136723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:238-370
               
               
               Cow position:chr4:64040227-64040092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:239-372
               
               
               Cow position:chr4:15236744-15236609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr4:29805263-29805397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:241-348
               
               
               Cow position:chr4:59015696-59015591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr4:24481563-24481698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:242-370
               
               
               Cow position:chr4:12676906-12676778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:245-347
               
               
               Cow position:chr4:13140991-13141094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:246-372
               
               
               Cow position:chr4:21017-20885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:246-372
               
               
               Cow position:chr4:5460757-5460888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:127-331
               
               
               Cow position:chr5:65201947-65201754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:160-322
               
               
               Cow position:chr5:1090594-1090760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:160-330
               
               
               Cow position:chr5:29860547-29860386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:160-338
               
               
               Cow position:chr5:50822005-50821829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 60

               
               
               Conread position:160-348
               
               
               Cow position:chr5:6130790-6130603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):163, 42

               
               
               Conread position:160-372
               
               
               Cow position:chr5:45419915-45420131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:160-372
               
               
               Cow position:chr5:59872862-59873076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):156, 12

               
               
               Conread position:160-372
               
               
               Cow position:chr5:63656703-63656483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:160-389
               
               
               Cow position:chr5:1165389-1165163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:160-389
               
               
               Cow position:chr5:55019506-55019281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):165, 16

               
               
               Conread position:161-311
               
               
               Cow position:chr5:19468253-19468398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):148, 15

               
               
               Conread position:176-371
               
               
               Cow position:chr5:2851800-2851602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:176-372
               
               
               Cow position:chr5:30949700-30949909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:176-372
               
               
               Cow position:chr5:54060486-54060284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:176-372
               
               
               Cow position:chr5:58856310-58856109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):148, 137

               
               
               Conread position:177-328
               
               
               Cow position:chr5:54067834-54067986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:177-329
               
               
               Cow position:chr5:61822971-61822820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:177-368
               
               
               Cow position:chr5:55129548-55129353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):148, 56

               
               
               Conread position:182-372
               
               
               Cow position:chr5:63426800-63426999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:184-326
               
               
               Cow position:chr5:54154004-54154144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:190-341
               
               
               Cow position:chr5:66238030-66237882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:191-348
               
               
               Cow position:chr5:42622987-42623147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):138, 126

               
               
               Conread position:191-372
               
               
               Cow position:chr5:4709957-4710145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:191-372
               
               
               Cow position:chr5:20779204-20779389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:191-372
               
               
               Cow position:chr5:43844467-43844657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:192-348
               
               
               Cow position:chr5:70353787-70353952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:192-360
               
               
               Cow position:chr5:40515084-40515267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr5:27293691-27293878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:193-301
               
               
               Cow position:chr5:5028919-5028812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:193-328
               
               
               Cow position:chr5:49207134-49207271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:194-372
               
               
               Cow position:chr5:28230356-28230168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:195-372
               
               
               Cow position:chr5:54767720-54767902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:196-371
               
               
               Cow position:chr5:26723630-26723455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:197-333
               
               
               Cow position:chr5:28324522-28324387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:198-372
               
               
               Cow position:chr5:23678521-23678693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:199-372
               
               
               Cow position:chr5:4031801-4031983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:200-370
               
               
               Cow position:chr5:47696264-47696433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:200-372
               
               
               Cow position:chr5:26476834-26477011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:202-365
               
               
               Cow position:chr5:44726151-44726321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:202-372
               
               
               Cow position:chr5:7713944-7713777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:204-371
               
               
               Cow position:chr5:57489773-57489938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):121, 29

               
               
               Conread position:207-328
               
               
               Cow position:chr5:61810946-61810827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:208-371
               
               
               Cow position:chr5:58446982-58446814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):119, 45

               
               
               Conread position:208-372
               
               
               Cow position:chr5:9089852-9090017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):112, 69

               
               
               Conread position:208-372
               
               
               Cow position:chr5:46322628-46322792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:208-372
               
               
               Cow position:chr5:54311510-54311342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:209-372
               
               
               Cow position:chr5:25020594-25020761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 57

               
               
               Conread position:209-372
               
               
               Cow position:chr5:54086712-54086547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 20

               
               
               Conread position:210-328
               
               
               Cow position:chr5:38647814-38647696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr5:43929562-43929680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr5:56338847-56338965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-347
               
               
               Cow position:chr5:34116149-34116013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 36

               
               
               Conread position:210-365
               
               
               Cow position:chr5:12738384-12738542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:210-370
               
               
               Cow position:chr5:56317463-56317302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 58

               
               
               Conread position:210-371
               
               
               Cow position:chr5:61875712-61875550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:210-372
               
               
               Cow position:chr5:34301094-34300925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:210-372
               
               
               Cow position:chr5:41981544-41981378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr5:43992498-43992330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr5:59115558-59115392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:210-372
               
               
               Cow position:chr5:60908838-60908672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:210-373
               
               
               Cow position:chr5:58555312-58555142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:211-333
               
               
               Cow position:chr5:45037424-45037301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:211-370
               
               
               Cow position:chr5:57150840-57150673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr5:13717400-13717562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):115, 7

               
               
               Conread position:211-372
               
               
               Cow position:chr5:37808489-37808657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr5:49501651-49501818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr5:56428143-56428305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:211-372
               
               
               Cow position:chr5:57230164-57230332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:212-328
               
               
               Cow position:chr5:53175086-53175202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):65, 56

               
               
               Conread position:212-328
               
               
               Cow position:chr5:57744751-57744867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-329
               
               
               Cow position:chr5:14354247-14354130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-370
               
               
               Cow position:chr5:49341877-49342041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:213-327
               
               
               Cow position:chr5:58452549-58452437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:213-348
               
               
               Cow position:chr5:20882454-20882592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:213-372
               
               
               Cow position:chr5:21039813-21039972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:213-372
               
               
               Cow position:chr5:51490078-51490239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:214-348
               
               
               Cow position:chr5:4336461-4336329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:214-370
               
               
               Cow position:chr5:18062150-18062311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 24

               
               
               Conread position:214-372
               
               
               Cow position:chr5:39447365-39447529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:214-372
               
               
               Cow position:chr5:44993879-44994034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr5:52108100-52108262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:216-328
               
               
               Cow position:chr5:48061950-48062061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr5:35969700-35969539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr5:59627268-59627106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:217-348
               
               
               Cow position:chr5:695027-694896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:217-348
               
               
               Cow position:chr5:3677884-3677755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):105, 5

               
               
               Conread position:217-368
               
               
               Cow position:chr5:3743487-3743332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):108, 43

               
               
               Conread position:217-371
               
               
               Cow position:chr5:56361960-56361803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr5:17566271-17566432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr5:29771695-29771534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr5:29828211-29828052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:217-372
               
               
               Cow position:chr5:67634347-67634511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:218-327
               
               
               Cow position:chr5:60126856-60126747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-348
               
               
               Cow position:chr5:64843805-64843939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:218-356
               
               
               Cow position:chr5:23866314-23866449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):130, 111

               
               
               Conread position:218-372
               
               
               Cow position:chr5:2827538-2827380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:219-328
               
               
               Cow position:chr5:64026856-64026963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:219-348
               
               
               Cow position:chr5:4347539-4347672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr5:33273858-33273701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:219-373
               
               
               Cow position:chr5:57101359-57101517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):110, 44

               
               
               Conread position:220-345
               
               
               Cow position:chr5:49821591-49821463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:220-371
               
               
               Cow position:chr5:67932308-67932459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):126, 119

               
               
               Conread position:221-370
               
               
               Cow position:chr5:63234667-63234816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:221-372
               
               
               Cow position:chr5:66972594-66972435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:222-331
               
               
               Cow position:chr5:38079531-38079423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:222-363
               
               
               Cow position:chr5:52001461-52001608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:222-365
               
               
               Cow position:chr5:36868897-36868750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 65

               
               
               Conread position:222-366
               
               
               Cow position:chr5:39937277-39937128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr5:2240829-2240980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 60

               
               
               Conread position:222-370
               
               
               Cow position:chr5:65679813-65679962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:222-371
               
               
               Cow position:chr5:5856020-5855865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr5:35208423-35208271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr5:458648-458495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:222-372
               
               
               Cow position:chr5:11769432-11769277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr5:12902079-12901929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 132

               
               
               Conread position:222-372
               
               
               Cow position:chr5:14903905-14904063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr5:16205993-16206147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 126

               
               
               Conread position:222-372
               
               
               Cow position:chr5:17999334-17999486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr5:20994924-20995086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr5:34528707-34528557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:222-372
               
               
               Cow position:chr5:35246948-35247104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):109, 149

               
               
               Conread position:222-372
               
               
               Cow position:chr5:43846217-43846368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:222-372
               
               
               Cow position:chr5:54750968-54750821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:222-389
               
               
               Cow position:chr5:60715206-60715374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 137

               
               
               Conread position:223-372
               
               
               Cow position:chr5:29352965-29353119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:223-372
               
               
               Cow position:chr5:67212519-67212367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:223-373
               
               
               Cow position:chr5:20212120-20211967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:224-369
               
               
               Cow position:chr5:30253901-30253750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr5:16939434-16939588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr5:19752462-19752313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):129, 95

               
               
               Conread position:224-372
               
               
               Cow position:chr5:44163208-44163363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 8

               
               
               Conread position:225-372
               
               
               Cow position:chr5:2309399-2309550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:225-372
               
               
               Cow position:chr5:43858263-43858413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:225-385
               
               
               Cow position:chr5:53710530-53710696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr5:65745608-65745709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:226-348
               
               
               Cow position:chr5:51490444-51490570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:226-349
               
               
               Cow position:chr5:30236030-30235911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:226-366
               
               
               Cow position:chr5:17383998-17384137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):124, 93

               
               
               Conread position:226-369
               
               
               Cow position:chr5:17602047-17602191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 125

               
               
               Conread position:226-372
               
               
               Cow position:chr5:9369113-9369265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr5:44796575-44796727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr5:52723733-52723583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr5:59626812-59626965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:226-383
               
               
               Cow position:chr5:30845266-30845108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:226-389
               
               
               Cow position:chr5:11668027-11668196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:227-327
               
               
               Cow position:chr5:29979801-29979901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-369
               
               
               Cow position:chr5:63059216-63059083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr5:42064362-42064211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-328
               
               
               Cow position:chr5:52029560-52029463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:228-347
               
               
               Cow position:chr5:38040408-38040529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-348
               
               
               Cow position:chr5:16668853-16668729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:228-348
               
               
               Cow position:chr5:44734567-44734693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr5:30276846-30276699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:228-370
               
               
               Cow position:chr5:37646388-37646535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 63

               
               
               Conread position:228-372
               
               
               Cow position:chr5:4280604-4280452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr5:41294238-41294088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 136

               
               
               Conread position:228-372
               
               
               Cow position:chr5:50101218-50101370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr5:57062370-57062523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:228-373
               
               
               Cow position:chr5:5016581-5016434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:228-389
               
               
               Cow position:chr5:18289278-18289119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):146, 113

               
               
               Conread position:229-372
               
               
               Cow position:chr5:33560579-33560728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:230-371
               
               
               Cow position:chr5:4267821-4267677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:230-372
               
               
               Cow position:chr5:3772002-3771856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:230-377
               
               
               Cow position:chr5:55177039-55176897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:233-370
               
               
               Cow position:chr5:36839110-36838968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:233-371
               
               
               Cow position:chr5:29515355-29515489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:233-371
               
               
               Cow position:chr5:39258657-39258515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr5:41713451-41713305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:233-372
               
               
               Cow position:chr5:54350210-54350355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:233-375
               
               
               Cow position:chr5:42753057-42752913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:234-328
               
               
               Cow position:chr5:60207857-60207764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:234-348
               
               
               Cow position:chr5:19079399-19079284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:234-348
               
               
               Cow position:chr5:36823033-36822919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-371
               
               
               Cow position:chr5:6683218-6683356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:234-372
               
               
               Cow position:chr5:15471079-15470940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 128

               
               
               Conread position:234-372
               
               
               Cow position:chr5:15479275-15479132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 46

               
               
               Conread position:234-372
               
               
               Cow position:chr5:55795816-55795961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:234-378
               
               
               Cow position:chr5:65722386-65722530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:235-348
               
               
               Cow position:chr5:51125859-51125977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:235-371
               
               
               Cow position:chr5:60948281-60948140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr5:41165237-41165094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:235-387
               
               
               Cow position:chr5:28224601-28224444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 62

               
               
               Conread position:236-372
               
               
               Cow position:chr5:1396747-1396606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:237-370
               
               
               Cow position:chr5:69731647-69731514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:237-372
               
               
               Cow position:chr5:56613416-56613558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr5:63987298-63987439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:238-371
               
               
               Cow position:chr5:30805310-30805172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:239-372
               
               
               Cow position:chr5:47323607-47323469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:241-328
               
               
               Cow position:chr5:17644485-17644572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr5:5257145-5257282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:245-371
               
               
               Cow position:chr5:23529144-23529271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:245-372
               
               
               Cow position:chr5:7723804-7723670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr5:60747142-60747270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:246-372
               
               
               Cow position:chr5:26262541-26262668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):104, 73

               
               
               Conread position:248-372
               
               
               Cow position:chr5:62142812-62142682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:90-365
               
               
               Cow position:chr6:41376077-41375799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:150-323
               
               
               Cow position:chr6:54364528-54364698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):162, 39

               
               
               Conread position:160-328
               
               
               Cow position:chr6:416367-416195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:160-347
               
               
               Cow position:chr6:23656536-23656726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:160-370
               
               
               Cow position:chr6:6343668-6343448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:160-372
               
               
               Cow position:chr6:14958111-14958322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):162, 31

               
               
               Conread position:160-372
               
               
               Cow position:chr6:35103099-35103308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):162, 16

               
               
               Conread position:161-330
               
               
               Cow position:chr6:35964296-35964467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:167-330
               
               
               Cow position:chr6:41937040-41937200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:172-403
               
               
               Cow position:chr6:10224417-10224190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:177-312
               
               
               Cow position:chr6:48885353-48885490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:177-369
               
               
               Cow position:chr6:1002038-1002240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:181-371
               
               
               Cow position:chr6:47799508-47799314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):148, 11

               
               
               Conread position:181-371
               
               
               Cow position:chr6:54990785-54990980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):150, 48

               
               
               Conread position:182-372
               
               
               Cow position:chr6:30974250-30974066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):168, 14

               
               
               Conread position:184-372
               
               
               Cow position:chr6:582056-582252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:191-348
               
               
               Cow position:chr6:107219-107379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 59

               
               
               Conread position:192-370
               
               
               Cow position:chr6:21066675-21066862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:192-371
               
               
               Cow position:chr6:7568327-7568144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:192-372
               
               
               Cow position:chr6:18048815-18049004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:192-372
               
               
               Cow position:chr6:18144402-18144211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:192-372
               
               
               Cow position:chr6:35896151-35896322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr6:55535546-55535729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 97

               
               
               Conread position:193-328
               
               
               Cow position:chr6:8209401-8209535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:193-328
               
               
               Cow position:chr6:32184842-32184978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:195-372
               
               
               Cow position:chr6:10613043-10612874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:196-323
               
               
               Cow position:chr6:61182652-61182779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:196-334
               
               
               Cow position:chr6:37603767-37603630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:197-372
               
               
               Cow position:chr6:51675109-51674930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):47, 72

               
               
               Conread position:198-328
               
               
               Cow position:chr6:139446-139574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:198-343
               
               
               Cow position:chr6:36516158-36516014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:198-347
               
               
               Cow position:chr6:19507990-19508141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):126, 35

               
               
               Conread position:198-371
               
               
               Cow position:chr6:60451626-60451448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):126, 52

               
               
               Conread position:199-328
               
               
               Cow position:chr6:50882780-50882650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:199-372
               
               
               Cow position:chr6:35993782-35993604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):126, 69

               
               
               Conread position:200-370
               
               
               Cow position:chr6:37783599-37783422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:200-372
               
               
               Cow position:chr6:38771480-38771305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:202-334
               
               
               Cow position:chr6:15172765-15172632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:205-313
               
               
               Cow position:chr6:358794-358686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:205-372
               
               
               Cow position:chr6:65903431-65903604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:206-369
               
               
               Cow position:chr6:9302529-9302694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):116, 5

               
               
               Conread position:206-372
               
               
               Cow position:chr6:2623965-2623801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:207-328
               
               
               Cow position:chr6:7130687-7130810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr6:21235233-21235062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:208-388
               
               
               Cow position:chr6:9750866-9751050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:209-333
               
               
               Cow position:chr6:29852878-29853001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:209-361
               
               
               Cow position:chr6:60516811-60516656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 36

               
               
               Conread position:210-328
               
               
               Cow position:chr6:28900516-28900396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr6:47676200-47676083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:210-331
               
               
               Cow position:chr6:34498932-34498805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:210-333
               
               
               Cow position:chr6:16764458-16764581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-341
               
               
               Cow position:chr6:17194399-17194268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-347
               
               
               Cow position:chr6:66131492-66131356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):120, 50

               
               
               Conread position:210-364
               
               
               Cow position:chr6:23465845-23466005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:210-372
               
               
               Cow position:chr6:49096266-49096431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:211-329
               
               
               Cow position:chr6:35702156-35702276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr6:19131619-19131450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr6:59069433-59069604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:211-372
               
               
               Cow position:chr6:67214936-67214769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:212-322
               
               
               Cow position:chr6:38020859-38020749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-355
               
               
               Cow position:chr6:49607575-49607432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):115, 12

               
               
               Conread position:212-371
               
               
               Cow position:chr6:48469184-48469021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):112, 42

               
               
               Conread position:212-372
               
               
               Cow position:chr6:47339170-47339336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:212-389
               
               
               Cow position:chr6:65259307-65259484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:213-372
               
               
               Cow position:chr6:3592582-3592422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):123, 131

               
               
               Conread position:213-372
               
               
               Cow position:chr6:46331103-46330945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:213-372
               
               
               Cow position:chr6:51969262-51969097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:214-347
               
               
               Cow position:chr6:34569589-34569454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 21

               
               
               Conread position:214-365
               
               
               Cow position:chr6:36643311-36643465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:214-372
               
               
               Cow position:chr6:4691792-4691955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:214-372
               
               
               Cow position:chr6:8787856-8788017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 5

               
               
               Conread position:215-364
               
               
               Cow position:chr6:54864476-54864628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 111

               
               
               Conread position:215-372
               
               
               Cow position:chr6:5095359-5095525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):42, 51

               
               
               Conread position:216-328
               
               
               Cow position:chr6:53513840-53513952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-328
               
               
               Cow position:chr6:60186481-60186593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-370
               
               
               Cow position:chr6:5113874-5114027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):127, 34

               
               
               Conread position:216-371
               
               
               Cow position:chr6:67951131-67950976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):137, 102

               
               
               Conread position:216-372
               
               
               Cow position:chr6:17997141-17997299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:216-372
               
               
               Cow position:chr6:24781378-24781535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:218-372
               
               
               Cow position:chr6:10225477-10225627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr6:19045801-19045642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):103, 9

               
               
               Conread position:218-372
               
               
               Cow position:chr6:47356002-47355843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 37

               
               
               Conread position:218-372
               
               
               Cow position:chr6:56986471-56986628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):115, 129

               
               
               Conread position:219-333
               
               
               Cow position:chr6:20008631-20008519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 59

               
               
               Conread position:219-372
               
               
               Cow position:chr6:10399736-10399885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):115, 58

               
               
               Conread position:219-372
               
               
               Cow position:chr6:19446429-19446273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr6:55665709-55665557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:220-372
               
               
               Cow position:chr6:12669271-12669120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:220-372
               
               
               Cow position:chr6:15447020-15447178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr6:17794586-17794744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr6:38207314-38207469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:221-369
               
               
               Cow position:chr6:44194373-44194526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:221-372
               
               
               Cow position:chr6:13367462-13367305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr6:40032367-40032211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:222-345
               
               
               Cow position:chr6:58076569-58076442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-364
               
               
               Cow position:chr6:51835572-51835428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:222-371
               
               
               Cow position:chr6:18447342-18447496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):105, 115

               
               
               Conread position:222-372
               
               
               Cow position:chr6:6060397-6060552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:222-372
               
               
               Cow position:chr6:10176126-10176282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr6:14914060-14914215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr6:15243012-15242854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr6:21467092-21467244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr6:24110457-24110302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr6:35181081-35181236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):107, 144

               
               
               Conread position:222-372
               
               
               Cow position:chr6:51530012-51530170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr6:57079599-57079443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr6:57546053-57546201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr6:69153585-69153433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-373
               
               
               Cow position:chr6:5330587-5330431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:222-378
               
               
               Cow position:chr6:50771187-50771345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:222-389
               
               
               Cow position:chr6:19695982-19695813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 159

               
               
               Conread position:222-393
               
               
               Cow position:chr6:32453560-32453385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:222-437
               
               
               Cow position:chr6:62437590-62437371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 206

               
               
               Conread position:223-370
               
               
               Cow position:chr6:48436004-48435856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):127, 43

               
               
               Conread position:223-372
               
               
               Cow position:chr6:1103564-1103719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:223-372
               
               
               Cow position:chr6:7801223-7801372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:224-370
               
               
               Cow position:chr6:54867691-54867539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr6:44867370-44867522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:224-372
               
               
               Cow position:chr6:21535213-21535057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr6:31865266-31865118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr6:37692921-37692771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:225-328
               
               
               Cow position:chr6:35654377-35654480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-367
               
               
               Cow position:chr6:52044771-52044914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):125, 86

               
               
               Conread position:225-372
               
               
               Cow position:chr6:37199365-37199507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):125, 50

               
               
               Conread position:226-365
               
               
               Cow position:chr6:10105807-10105952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr6:33450804-33450950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:227-372
               
               
               Cow position:chr6:40774161-40774312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-348
               
               
               Cow position:chr6:15058546-15058422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-353
               
               
               Cow position:chr6:31510497-31510373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr6:120415-120270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-369
               
               
               Cow position:chr6:15937685-15937832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr6:61142391-61142542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr6:143205-143354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:228-372
               
               
               Cow position:chr6:16287890-16288038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr6:19225216-19225354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:228-372
               
               
               Cow position:chr6:37149359-37149209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr6:37395230-37395381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr6:64432108-64431957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:228-372
               
               
               Cow position:chr6:67282064-67281915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):96, 138

               
               
               Conread position:229-370
               
               
               Cow position:chr6:60740185-60740036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr6:65264378-65264522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:231-334
               
               
               Cow position:chr6:22094597-22094493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:233-348
               
               
               Cow position:chr6:16352189-16352308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:233-371
               
               
               Cow position:chr6:1429804-1429661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:234-335
               
               
               Cow position:chr6:48278725-48278825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-369
               
               
               Cow position:chr6:47575070-47574929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:234-371
               
               
               Cow position:chr6:54127652-54127792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):90, 44

               
               
               Conread position:234-371
               
               
               Cow position:chr6:60057495-60057634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:234-372
               
               
               Cow position:chr6:1475510-1475365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr6:2585106-2584962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr6:35990070-35990216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr6:61575983-61575845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):98, 83

               
               
               Conread position:234-372
               
               
               Cow position:chr6:63298868-63299011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:234-389
               
               
               Cow position:chr6:38441336-38441179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 152

               
               
               Conread position:234-390
               
               
               Cow position:chr6:21061723-21061879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):116, 27

               
               
               Conread position:235-372
               
               
               Cow position:chr6:57287500-57287641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:235-372
               
               
               Cow position:chr6:59301627-59301763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:235-372
               
               
               Cow position:chr6:67805852-67805995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:235-376
               
               
               Cow position:chr6:17412403-17412541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 87

               
               
               Conread position:236-372
               
               
               Cow position:chr6:15300673-15300809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:237-372
               
               
               Cow position:chr6:6098105-6098240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 110

               
               
               Conread position:238-372
               
               
               Cow position:chr6:26450473-26450334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:239-372
               
               
               Cow position:chr6:54573419-54573279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr6:20196146-20196279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:242-370
               
               
               Cow position:chr6:42565843-42565710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:242-372
               
               
               Cow position:chr6:19681369-19681505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr6:63047748-63047612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:243-372
               
               
               Cow position:chr6:38218821-38218688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr6:16707165-16707035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:248-372
               
               
               Cow position:chr6:32268738-32268864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:248-372
               
               
               Cow position:chr6:37463172-37463042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:259-375
               
               
               Cow position:chr6:28156024-28156142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:160-328
               
               
               Cow position:chr7:45331768-45331610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:160-348
               
               
               Cow position:chr7:11759854-11759667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:160-372
               
               
               Cow position:chr7:15566988-15566774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:160-372
               
               
               Cow position:chr7:26485804-26485596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):167, 7

               
               
               Conread position:161-347
               
               
               Cow position:chr7:5201437-5201628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:167-355
               
               
               Cow position:chr7:3729488-3729301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:173-328
               
               
               Cow position:chr7:51020004-51019850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:176-328
               
               
               Cow position:chr7:6025806-6025952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:176-328
               
               
               Cow position:chr7:34005184-34005033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:177-328
               
               
               Cow position:chr7:8088674-8088825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 92

               
               
               Conread position:180-370
               
               
               Cow position:chr7:24461170-24460975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):142, 30

               
               
               Conread position:181-328
               
               
               Cow position:chr7:3256126-3256273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-372
               
               
               Cow position:chr7:147630-147437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:185-372
               
               
               Cow position:chr7:36774585-36774390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:189-332
               
               
               Cow position:chr7:2404422-2404282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:191-326
               
               
               Cow position:chr7:26982891-26983027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:191-334
               
               
               Cow position:chr7:24717347-24717488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:192-314
               
               
               Cow position:chr7:64256795-64256917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:192-330
               
               
               Cow position:chr7:51320013-51319877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:192-365
               
               
               Cow position:chr7:40744982-40744804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr7:50858160-50857974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 47

               
               
               Conread position:192-372
               
               
               Cow position:chr7:58923604-58923420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 41

               
               
               Conread position:193-328
               
               
               Cow position:chr7:32915322-32915187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-372
               
               
               Cow position:chr7:1792246-1792426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):133, 23

               
               
               Conread position:195-307
               
               
               Cow position:chr7:45656718-45656830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:195-326
               
               
               Cow position:chr7:21774050-21773919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:195-348
               
               
               Cow position:chr7:9800561-9800408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 127

               
               
               Conread position:198-372
               
               
               Cow position:chr7:17816949-17816771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:198-372
               
               
               Cow position:chr7:20176507-20176682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:198-372
               
               
               Cow position:chr7:38603920-38604092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:198-372
               
               
               Cow position:chr7:41464668-41464493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):152, 63

               
               
               Conread position:198-372
               
               
               Cow position:chr7:57518279-57518099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:199-339
               
               
               Cow position:chr7:42472277-42472139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:202-372
               
               
               Cow position:chr7:18947548-18947724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 61

               
               
               Conread position:204-328
               
               
               Cow position:chr7:1783021-1783145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 19

               
               
               Conread position:204-371
               
               
               Cow position:chr7:40952670-40952835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:205-373
               
               
               Cow position:chr7:53653180-53653004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:207-371
               
               
               Cow position:chr7:58862691-58862858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr7:30931786-30931951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):143, 27

               
               
               Conread position:208-318
               
               
               Cow position:chr7:11978432-11978321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:209-372
               
               
               Cow position:chr7:27283865-27283700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):127, 136

               
               
               Conread position:210-326
               
               
               Cow position:chr7:21008745-21008860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr7:43307365-43307247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr7:64236072-64236189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:210-348
               
               
               Cow position:chr7:51007191-51007054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:210-364
               
               
               Cow position:chr7:25511933-25512094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:210-365
               
               
               Cow position:chr7:10943369-10943528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:210-372
               
               
               Cow position:chr7:2172940-2172770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr7:15739395-15739563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:210-372
               
               
               Cow position:chr7:25867311-25867474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 7

               
               
               Conread position:210-372
               
               
               Cow position:chr7:26911248-26911417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):6, 48

               
               
               Conread position:210-372
               
               
               Cow position:chr7:28096060-28095896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr7:37952369-37952201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:210-372
               
               
               Cow position:chr7:39838688-39838856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:210-372
               
               
               Cow position:chr7:44986843-44986676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):118, 92

               
               
               Conread position:210-372
               
               
               Cow position:chr7:57258833-57259001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:211-324
               
               
               Cow position:chr7:7768031-7768142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:211-328
               
               
               Cow position:chr7:38082345-38082228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-365
               
               
               Cow position:chr7:34422083-34422237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:211-388
               
               
               Cow position:chr7:40067847-40067667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 23

               
               
               Conread position:212-369
               
               
               Cow position:chr7:47698193-47698038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:212-371
               
               
               Cow position:chr7:23089959-23090121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr7:45158305-45158144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 55

               
               
               Conread position:213-330
               
               
               Cow position:chr7:55060451-55060334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:213-370
               
               
               Cow position:chr7:64364341-64364504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:213-372
               
               
               Cow position:chr7:42894636-42894466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr7:53606146-53606303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr7:17713286-17713399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:214-334
               
               
               Cow position:chr7:63968008-63968129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:214-372
               
               
               Cow position:chr7:13593952-13593791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:216-328
               
               
               Cow position:chr7:23936296-23936183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:216-371
               
               
               Cow position:chr7:168483-168643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):108, 35

               
               
               Conread position:216-371
               
               
               Cow position:chr7:23636886-23636729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):106, 34

               
               
               Conread position:216-372
               
               
               Cow position:chr7:4812192-4812038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:216-372
               
               
               Cow position:chr7:8289725-8289882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:216-372
               
               
               Cow position:chr7:44454092-44454258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:217-369
               
               
               Cow position:chr7:63121232-63121387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:218-328
               
               
               Cow position:chr7:4060447-4060337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:218-335
               
               
               Cow position:chr7:24563915-24564031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:218-371
               
               
               Cow position:chr7:39129427-39129583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:219-323
               
               
               Cow position:chr7:48900742-48900638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-328
               
               
               Cow position:chr7:34974490-34974381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr7:9146823-9146670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):131, 48

               
               
               Conread position:219-372
               
               
               Cow position:chr7:61790170-61790330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:220-341
               
               
               Cow position:chr7:7475931-7476058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:220-360
               
               
               Cow position:chr7:6077303-6077445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 129

               
               
               Conread position:220-367
               
               
               Cow position:chr7:68240644-68240491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:220-371
               
               
               Cow position:chr7:37023109-37022951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:220-371
               
               
               Cow position:chr7:68857410-68857563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:220-372
               
               
               Cow position:chr7:9161495-9161654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr7:33720215-33720057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:221-325
               
               
               Cow position:chr7:30536391-30536494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:221-347
               
               
               Cow position:chr7:34216387-34216261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):123, 43

               
               
               Conread position:221-372
               
               
               Cow position:chr7:9861588-9861741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:221-372
               
               
               Cow position:chr7:48721727-48721877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:222-327
               
               
               Cow position:chr7:53996478-53996373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-328
               
               
               Cow position:chr7:40310885-40310990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:222-342
               
               
               Cow position:chr7:58329724-58329843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:222-346
               
               
               Cow position:chr7:35754850-35754724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-360
               
               
               Cow position:chr7:25263546-25263405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-364
               
               
               Cow position:chr7:65615946-65615798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):103, 128

               
               
               Conread position:222-370
               
               
               Cow position:chr7:58800345-58800193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:222-371
               
               
               Cow position:chr7:23678103-23677949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:222-371
               
               
               Cow position:chr7:51685192-51685037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr7:64135290-64135444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:222-372
               
               
               Cow position:chr7:18388221-18388377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr7:19797751-19797907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr7:38361060-38361215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):102, 127

               
               
               Conread position:222-372
               
               
               Cow position:chr7:40308342-40308497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:222-372
               
               
               Cow position:chr7:46823848-46823692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr7:63300374-63300222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:223-368
               
               
               Cow position:chr7:2579060-2579211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr7:29279846-29279997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:223-372
               
               
               Cow position:chr7:33386101-33385944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr7:38060249-38060404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr7:68540423-68540578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:224-328
               
               
               Cow position:chr7:17750666-17750770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-341
               
               
               Cow position:chr7:63023317-63023205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:224-348
               
               
               Cow position:chr7:5906810-5906682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:224-351
               
               
               Cow position:chr7:23671928-23671797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-370
               
               
               Cow position:chr7:25860027-25860171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:224-370
               
               
               Cow position:chr7:50166205-50166053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr7:19414273-19414429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr7:24927846-24928001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr7:36570039-36569884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr7:39947075-39947227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:224-372
               
               
               Cow position:chr7:40009006-40008851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr7:52718463-52718613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):98, 87

               
               
               Conread position:224-372
               
               
               Cow position:chr7:59688714-59688568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:224-382
               
               
               Cow position:chr7:40710302-40710139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:225-372
               
               
               Cow position:chr7:23568560-23568713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr7:11884108-11884209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:226-329
               
               
               Cow position:chr7:6821222-6821116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:226-369
               
               
               Cow position:chr7:26263475-26263628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:226-371
               
               
               Cow position:chr7:1761905-1761754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr7:9200248-9200399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr7:11015856-11015704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr7:11549836-11549688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 15

               
               
               Conread position:226-372
               
               
               Cow position:chr7:34464529-34464381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 8

               
               
               Conread position:226-372
               
               
               Cow position:chr7:48406320-48406473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:226-372
               
               
               Cow position:chr7:65325581-65325732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:227-366
               
               
               Cow position:chr7:14536108-14536249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:227-369
               
               
               Cow position:chr7:1720795-1720941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:227-372
               
               
               Cow position:chr7:14486246-14486098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:227-372
               
               
               Cow position:chr7:29505288-29505137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr7:38697015-38696865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:227-372
               
               
               Cow position:chr7:63085922-63085771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:227-372
               
               
               Cow position:chr7:63946413-63946564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:227-404
               
               
               Cow position:chr7:49648529-49648351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:228-328
               
               
               Cow position:chr7:14317114-14317014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-363
               
               
               Cow position:chr7:32324372-32324232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:228-365
               
               
               Cow position:chr7:10796006-10795868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:228-366
               
               
               Cow position:chr7:14029481-14029339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr7:8089337-8089188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr7:25722494-25722642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr7:25786011-25785861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr7:34554425-34554288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:228-372
               
               
               Cow position:chr7:38429542-38429690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:228-372
               
               
               Cow position:chr7:55316030-55316177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr7:57506609-57506762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:229-328
               
               
               Cow position:chr7:11511895-11511796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr7:57066635-57066786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:230-346
               
               
               Cow position:chr7:30012002-30011886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr7:3336386-3336528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:230-372
               
               
               Cow position:chr7:16022465-16022317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 36

               
               
               Conread position:230-372
               
               
               Cow position:chr7:52784634-52784778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:232-348
               
               
               Cow position:chr7:17381623-17381503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:233-365
               
               
               Cow position:chr7:28544343-28544206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:233-372
               
               
               Cow position:chr7:24220836-24220690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:234-332
               
               
               Cow position:chr7:10403694-10403792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-345
               
               
               Cow position:chr7:13096145-13096035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:234-368
               
               
               Cow position:chr7:39472944-39473077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:234-370
               
               
               Cow position:chr7:44596536-44596674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr7:9137004-9136860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr7:9926567-9926710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:234-372
               
               
               Cow position:chr7:11066645-11066505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr7:25393465-25393327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:234-372
               
               
               Cow position:chr7:31315474-31315331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 38

               
               
               Conread position:234-372
               
               
               Cow position:chr7:48563312-48563452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr7:53989216-53989079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):114, 76

               
               
               Conread position:234-373
               
               
               Cow position:chr7:32710819-32710956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 63

               
               
               Conread position:235-367
               
               
               Cow position:chr7:30017353-30017488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 89

               
               
               Conread position:235-372
               
               
               Cow position:chr7:9175642-9175499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr7:32910702-32910561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:236-372
               
               
               Cow position:chr7:39823436-39823576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:237-371
               
               
               Cow position:chr7:2894889-2894750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:237-371
               
               
               Cow position:chr7:14497744-14497613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:237-372
               
               
               Cow position:chr7:4129617-4129758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr7:5853511-5853377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:237-372
               
               
               Cow position:chr7:18247666-18247807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:239-336
               
               
               Cow position:chr7:26631652-26631748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:239-372
               
               
               Cow position:chr7:40894703-40894563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:242-389
               
               
               Cow position:chr7:34412120-34412268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 87

               
               
               Conread position:243-372
               
               
               Cow position:chr7:255662-255790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 74

               
               
               Conread position:245-372
               
               
               Cow position:chr7:11176574-11176707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr7:52517481-52517348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr7:52758624-52758495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:246-372
               
               
               Cow position:chr7:19981692-19981824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:248-372
               
               
               Cow position:chr7:32079603-32079474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:252-372
               
               
               Cow position:chr7:49630325-49630199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:260-372
               
               
               Cow position:chr7:23251426-23251540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:151-372
               
               
               Cow position:chr8:18647146-18647367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:160-344
               
               
               Cow position:chr8:51480401-51480591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:160-372
               
               
               Cow position:chr8:45127491-45127712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr8:47501010-47500796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):170, 57

               
               
               Conread position:160-372
               
               
               Cow position:chr8:48956153-48955933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:168-345
               
               
               Cow position:chr8:11148439-11148620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 84

               
               
               Conread position:170-331
               
               
               Cow position:chr8:18340254-18340414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:173-373
               
               
               Cow position:chr8:24471851-24471642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:176-295
               
               
               Cow position:chr8:45689733-45689852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:177-370
               
               
               Cow position:chr8:50335335-50335528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):166, 57

               
               
               Conread position:178-345
               
               
               Cow position:chr8:14109582-14109415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 162

               
               
               Conread position:179-341
               
               
               Cow position:chr8:43985728-43985897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:180-372
               
               
               Cow position:chr8:47462048-47461849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:181-372
               
               
               Cow position:chr8:57208287-57208483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:189-372
               
               
               Cow position:chr8:20837299-20837115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):161, 64

               
               
               Conread position:190-369
               
               
               Cow position:chr8:26386043-26386218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:191-331
               
               
               Cow position:chr8:25649502-25649643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:191-372
               
               
               Cow position:chr8:36829677-36829863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 60

               
               
               Conread position:192-328
               
               
               Cow position:chr8:60585039-60585176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr8:16507618-16507795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:192-372
               
               
               Cow position:chr8:31762714-31762531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:192-373
               
               
               Cow position:chr8:26600944-26600759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:193-328
               
               
               Cow position:chr8:20879241-20879375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:194-326
               
               
               Cow position:chr8:19997849-19997982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:196-365
               
               
               Cow position:chr8:45126065-45126237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):134, 36

               
               
               Conread position:196-372
               
               
               Cow position:chr8:9468513-9468337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):129, 72

               
               
               Conread position:198-312
               
               
               Cow position:chr8:30920634-30920747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:198-314
               
               
               Cow position:chr8:46190889-46191003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:198-328
               
               
               Cow position:chr8:54147838-54147707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:198-405
               
               
               Cow position:chr8:26304225-26304431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:200-372
               
               
               Cow position:chr8:15390988-15391164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:202-372
               
               
               Cow position:chr8:38596057-38596230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:205-332
               
               
               Cow position:chr8:11135080-11135206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:205-372
               
               
               Cow position:chr8:23179382-23179550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):138, 40

               
               
               Conread position:206-372
               
               
               Cow position:chr8:25388298-25388131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:207-328
               
               
               Cow position:chr8:35991215-35991091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr8:5894102-5893936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:207-372
               
               
               Cow position:chr8:16505654-16505486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:208-328
               
               
               Cow position:chr8:50709213-50709095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:208-370
               
               
               Cow position:chr8:3922555-3922723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr8:60485369-60485197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:209-372
               
               
               Cow position:chr8:3673529-3673362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr8:19010679-19010796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr8:28987858-28987740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):63, 58

               
               
               Conread position:210-337
               
               
               Cow position:chr8:21611540-21611412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:210-347
               
               
               Cow position:chr8:47969121-47969262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:210-368
               
               
               Cow position:chr8:3312518-3312673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:210-369
               
               
               Cow position:chr8:17167729-17167564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr8:12795983-12795815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr8:20157601-20157769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr8:24328703-24328862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):110, 58

               
               
               Conread position:210-372
               
               
               Cow position:chr8:36729828-36729660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 71

               
               
               Conread position:210-372
               
               
               Cow position:chr8:47664747-47664913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr8:51208942-51208772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr8:56181362-56181522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):140, 42

               
               
               Conread position:210-372
               
               
               Cow position:chr8:60478479-60478638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):127, 39

               
               
               Conread position:211-328
               
               
               Cow position:chr8:53486064-53485947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:211-347
               
               
               Cow position:chr8:26694987-26694850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:211-365
               
               
               Cow position:chr8:36490025-36489867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:211-367
               
               
               Cow position:chr8:43153532-43153694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:211-367
               
               
               Cow position:chr8:58377424-58377578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):132, 50

               
               
               Conread position:211-369
               
               
               Cow position:chr8:39174084-39174249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:211-370
               
               
               Cow position:chr8:5884533-5884698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr8:21382531-21382700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:212-327
               
               
               Cow position:chr8:35555167-35555283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:212-328
               
               
               Cow position:chr8:37672191-37672076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:212-368
               
               
               Cow position:chr8:15569326-15569488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:212-369
               
               
               Cow position:chr8:42112669-42112831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):60, 49

               
               
               Conread position:212-372
               
               
               Cow position:chr8:17232204-17232369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 137

               
               
               Conread position:212-372
               
               
               Cow position:chr8:35504077-35504238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:212-388
               
               
               Cow position:chr8:53965322-53965503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:213-328
               
               
               Cow position:chr8:11927284-11927169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:213-348
               
               
               Cow position:chr8:20926475-20926614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr8:7149545-7149703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):131, 87

               
               
               Conread position:213-372
               
               
               Cow position:chr8:19698796-19698635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr8:21069819-21069983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr8:21600600-21600437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:213-372
               
               
               Cow position:chr8:37882501-37882336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:214-341
               
               
               Cow position:chr8:45232704-45232577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-369
               
               
               Cow position:chr8:46235850-46235692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 54

               
               
               Conread position:214-372
               
               
               Cow position:chr8:6616636-6616800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):49, 54

               
               
               Conread position:214-372
               
               
               Cow position:chr8:41905476-41905628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:214-372
               
               
               Cow position:chr8:41914384-41914536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:214-372
               
               
               Cow position:chr8:43104139-43104303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:215-327
               
               
               Cow position:chr8:3762302-3762190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-363
               
               
               Cow position:chr8:38811456-38811303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr8:1114659-1114818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:215-372
               
               
               Cow position:chr8:37347301-37347464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:215-372
               
               
               Cow position:chr8:54328606-54328439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr8:21858566-21858721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):124, 29

               
               
               Conread position:216-372
               
               
               Cow position:chr8:29958551-29958397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:216-373
               
               
               Cow position:chr8:37275910-37275750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 86

               
               
               Conread position:217-348
               
               
               Cow position:chr8:42378745-42378880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:217-365
               
               
               Cow position:chr8:61738486-61738333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:217-371
               
               
               Cow position:chr8:21077736-21077578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr8:11277950-11278114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:217-372
               
               
               Cow position:chr8:13374697-13374537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):112, 97

               
               
               Conread position:217-372
               
               
               Cow position:chr8:36672069-36671906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:218-367
               
               
               Cow position:chr8:38852239-38852085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:218-372
               
               
               Cow position:chr8:21911787-21911627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr8:60595006-60594853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 123

               
               
               Conread position:219-372
               
               
               Cow position:chr8:31265760-31265915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr8:40579263-40579423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:219-372
               
               
               Cow position:chr8:53251552-53251712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:220-348
               
               
               Cow position:chr8:54546741-54546608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr8:16061217-16061065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:220-372
               
               
               Cow position:chr8:40697023-40696869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr8:58417831-58417680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):130, 99

               
               
               Conread position:221-366
               
               
               Cow position:chr8:20910929-20911080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:221-372
               
               
               Cow position:chr8:49659275-49659120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:221-375
               
               
               Cow position:chr8:26608418-26608260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:222-329
               
               
               Cow position:chr8:49305604-49305710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:222-348
               
               
               Cow position:chr8:11003653-11003783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:222-369
               
               
               Cow position:chr8:15394716-15394866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):97, 10

               
               
               Conread position:222-370
               
               
               Cow position:chr8:26626015-26625861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr8:8323723-8323878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr8:31166961-31167113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:222-372
               
               
               Cow position:chr8:4992694-4992546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:222-372
               
               
               Cow position:chr8:11612697-11612540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr8:17199286-17199441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr8:20105727-20105882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr8:20327708-20327859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:222-372
               
               
               Cow position:chr8:20582541-20582697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr8:41722047-41722196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:222-372
               
               
               Cow position:chr8:50310704-50310862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr8:55974670-55974823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:222-389
               
               
               Cow position:chr8:16413666-16413836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 45

               
               
               Conread position:223-372
               
               
               Cow position:chr8:18206996-18207145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 97

               
               
               Conread position:223-372
               
               
               Cow position:chr8:46743170-46743321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr8:52968164-52968319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:224-334
               
               
               Cow position:chr8:57067609-57067501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr8:1024104-1023955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 120

               
               
               Conread position:224-372
               
               
               Cow position:chr8:8097122-8097276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr8:28210126-28209973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:224-372
               
               
               Cow position:chr8:43439756-43439603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr8:55900881-55901031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:224-372
               
               
               Cow position:chr8:61067430-61067281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:224-372
               
               
               Cow position:chr8:61845406-61845561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:225-372
               
               
               Cow position:chr8:1394378-1394222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:225-372
               
               
               Cow position:chr8:47135873-47136020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):125, 28

               
               
               Conread position:225-388
               
               
               Cow position:chr8:33926300-33926126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 8

               
               
               Conread position:226-369
               
               
               Cow position:chr8:42762288-42762437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr8:19785002-19784853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:226-386
               
               
               Cow position:chr8:6224295-6224458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:227-345
               
               
               Cow position:chr8:18757163-18757046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:228-368
               
               
               Cow position:chr8:19616451-19616311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:228-370
               
               
               Cow position:chr8:9652811-9652667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr8:1188057-1187912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:228-372
               
               
               Cow position:chr8:3445953-3446108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr8:25455546-25455397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr8:30324463-30324314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):97, 36

               
               
               Conread position:228-372
               
               
               Cow position:chr8:54032020-54031872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:229-369
               
               
               Cow position:chr8:20783124-20783268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:229-372
               
               
               Cow position:chr8:20339415-20339270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr8:38711731-38711592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr8:45879173-45879028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr8:45925755-45925610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr8:32192828-32192681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:231-372
               
               
               Cow position:chr8:60575921-60576066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 78

               
               
               Conread position:233-328
               
               
               Cow position:chr8:21776057-21775962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-334
               
               
               Cow position:chr8:4821043-4821144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-371
               
               
               Cow position:chr8:61128560-61128706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr8:19860533-19860669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr8:29026505-29026646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:233-372
               
               
               Cow position:chr8:43163566-43163712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr8:48512877-48513022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:233-372
               
               
               Cow position:chr8:57218937-57218796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:234-347
               
               
               Cow position:chr8:24767276-24767389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-348
               
               
               Cow position:chr8:5546273-5546155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:234-351
               
               
               Cow position:chr8:36860604-36860489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:234-363
               
               
               Cow position:chr8:37443664-37443532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 67

               
               
               Conread position:234-372
               
               
               Cow position:chr8:4525216-4525072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr8:18730584-18730438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr8:33805658-33805516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 131

               
               
               Conread position:234-372
               
               
               Cow position:chr8:36375380-36375525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr8:49656296-49656437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:235-328
               
               
               Cow position:chr8:19775142-19775050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:235-351
               
               
               Cow position:chr8:28884971-28884851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr8:17247357-17247217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 10

               
               
               Conread position:235-372
               
               
               Cow position:chr8:37334299-37334163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:235-372
               
               
               Cow position:chr8:53552809-53552666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:236-362
               
               
               Cow position:chr8:48524824-48524953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr8:4940186-4940320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:236-372
               
               
               Cow position:chr8:35497550-35497689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:236-372
               
               
               Cow position:chr8:39845746-39845608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:236-372
               
               
               Cow position:chr8:58520427-58520284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:236-389
               
               
               Cow position:chr8:18081666-18081510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:237-372
               
               
               Cow position:chr8:642445-642583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 74

               
               
               Conread position:237-372
               
               
               Cow position:chr8:43167896-43168038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:238-358
               
               
               Cow position:chr8:54197748-54197874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr8:10846370-10846230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr8:20657231-20657371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr8:37709281-37709141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:239-370
               
               
               Cow position:chr8:48086476-48086612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 122

               
               
               Conread position:241-372
               
               
               Cow position:chr8:53429905-53429766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:243-372
               
               
               Cow position:chr8:55853459-55853327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 66

               
               
               Conread position:244-372
               
               
               Cow position:chr8:37571579-37571713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:245-372
               
               
               Cow position:chr8:40143728-40143861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:247-371
               
               
               Cow position:chr8:53558487-53558613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:160-325
               
               
               Cow position:chr9:44130075-44130247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:160-328
               
               
               Cow position:chr9:50540861-50540703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:160-328
               
               
               Cow position:chr9:58404599-58404428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:160-328
               
               
               Cow position:chr9:64154835-64154673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:160-372
               
               
               Cow position:chr9:1972776-1972991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:160-372
               
               
               Cow position:chr9:3773993-3774210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:160-372
               
               
               Cow position:chr9:11313677-11313461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:160-372
               
               
               Cow position:chr9:59386930-59386720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):165, 11

               
               
               Conread position:161-323
               
               
               Cow position:chr9:1733179-1733338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:161-365
               
               
               Cow position:chr9:28378796-28379008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:161-372
               
               
               Cow position:chr9:34888452-34888249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):161, 30

               
               
               Conread position:161-372
               
               
               Cow position:chr9:36445452-36445669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:161-372
               
               
               Cow position:chr9:42446152-42445934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 54

               
               
               Conread position:166-372
               
               
               Cow position:chr9:41716282-41716474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:172-372
               
               
               Cow position:chr9:25627925-25628133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 197

               
               
               Conread position:173-334
               
               
               Cow position:chr9:59849627-59849468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:173-377
               
               
               Cow position:chr9:54051620-54051828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:176-372
               
               
               Cow position:chr9:8534851-8534641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:179-368
               
               
               Cow position:chr9:3738375-3738179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:181-328
               
               
               Cow position:chr9:31638805-31638658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 137

               
               
               Conread position:181-372
               
               
               Cow position:chr9:11319780-11319585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):144, 52

               
               
               Conread position:181-372
               
               
               Cow position:chr9:17310715-17310516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:182-372
               
               
               Cow position:chr9:39315704-39315896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:185-403
               
               
               Cow position:chr9:55084445-55084225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):145, 117

               
               
               Conread position:191-328
               
               
               Cow position:chr9:23840529-23840395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:191-372
               
               
               Cow position:chr9:8288485-8288664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):133, 14

               
               
               Conread position:191-372
               
               
               Cow position:chr9:46664686-46664876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:192-328
               
               
               Cow position:chr9:34065689-34065551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:192-328
               
               
               Cow position:chr9:54999034-54998898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:192-366
               
               
               Cow position:chr9:64050698-64050518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr9:17411330-17411144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:192-372
               
               
               Cow position:chr9:39681201-39681388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:193-328
               
               
               Cow position:chr9:46190006-46190141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-372
               
               
               Cow position:chr9:16300705-16300520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:193-372
               
               
               Cow position:chr9:54528379-54528561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:194-364
               
               
               Cow position:chr9:9654443-9654271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:194-369
               
               
               Cow position:chr9:5763765-5763587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):144, 75

               
               
               Conread position:194-369
               
               
               Cow position:chr9:24243858-24243675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:195-348
               
               
               Cow position:chr9:61981387-61981542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:195-372
               
               
               Cow position:chr9:32676548-32676726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:195-372
               
               
               Cow position:chr9:33940472-33940654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):132, 60

               
               
               Conread position:198-342
               
               
               Cow position:chr9:23403688-23403835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:198-348
               
               
               Cow position:chr9:34135586-34135739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:198-365
               
               
               Cow position:chr9:6293463-6293637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:198-372
               
               
               Cow position:chr9:37069687-37069508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:199-370
               
               
               Cow position:chr9:31814516-31814338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:199-372
               
               
               Cow position:chr9:50081170-50080991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:199-436
               
               
               Cow position:chr9:10878016-10877782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:205-326
               
               
               Cow position:chr9:13141414-13141534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:206-333
               
               
               Cow position:chr9:33681536-33681662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:206-356
               
               
               Cow position:chr9:9088484-9088636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:206-372
               
               
               Cow position:chr9:40507721-40507550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:207-372
               
               
               Cow position:chr9:22443749-22443578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:207-372
               
               
               Cow position:chr9:36843671-36843846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:207-373
               
               
               Cow position:chr9:32348936-32348764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:207-378
               
               
               Cow position:chr9:11030064-11030239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:208-355
               
               
               Cow position:chr9:31345379-31345528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:208-372
               
               
               Cow position:chr9:44822447-44822275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:209-348
               
               
               Cow position:chr9:44467461-44467316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:210-311
               
               
               Cow position:chr9:43281541-43281642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-311
               
               
               Cow position:chr9:50667137-50667237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:210-328
               
               
               Cow position:chr9:45454955-45455074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:210-330
               
               
               Cow position:chr9:1878804-1878923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-333
               
               
               Cow position:chr9:22375058-22375177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:210-348
               
               
               Cow position:chr9:63134276-63134414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-365
               
               
               Cow position:chr9:19067665-19067824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 40

               
               
               Conread position:210-369
               
               
               Cow position:chr9:8562703-8562866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:210-370
               
               
               Cow position:chr9:4268103-4267935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:210-370
               
               
               Cow position:chr9:34014368-34014202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr9:1520858-1520688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:210-372
               
               
               Cow position:chr9:5162181-5162001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:210-372
               
               
               Cow position:chr9:5509606-5509773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):117, 58

               
               
               Conread position:210-372
               
               
               Cow position:chr9:9461773-9461609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:210-372
               
               
               Cow position:chr9:38645463-38645297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:210-372
               
               
               Cow position:chr9:54716721-54716557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):142, 109

               
               
               Conread position:210-372
               
               
               Cow position:chr9:62668131-62668297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):120, 58

               
               
               Conread position:210-376
               
               
               Cow position:chr9:36849880-36850050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:211-347
               
               
               Cow position:chr9:3847284-3847424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:211-347
               
               
               Cow position:chr9:5407636-5407500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:211-365
               
               
               Cow position:chr9:55354493-55354653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 57

               
               
               Conread position:211-369
               
               
               Cow position:chr9:39758400-39758564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr9:18217217-18217050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:211-372
               
               
               Cow position:chr9:52513565-52513399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:211-372
               
               
               Cow position:chr9:55532694-55532863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:212-327
               
               
               Cow position:chr9:8535750-8535865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-328
               
               
               Cow position:chr9:34264978-34265094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-372
               
               
               Cow position:chr9:9753507-9753342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:212-372
               
               
               Cow position:chr9:11304193-11304030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:213-316
               
               
               Cow position:chr9:3369880-3369981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:213-372
               
               
               Cow position:chr9:26859240-26859397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr9:9406168-9406054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-328
               
               
               Cow position:chr9:9686527-9686413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-348
               
               
               Cow position:chr9:32812065-32812200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:214-372
               
               
               Cow position:chr9:9443715-9443555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):116, 27

               
               
               Conread position:214-390
               
               
               Cow position:chr9:32858748-32858565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 55

               
               
               Conread position:215-372
               
               
               Cow position:chr9:20416619-20416461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:215-372
               
               
               Cow position:chr9:40005363-40005523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 35

               
               
               Conread position:216-348
               
               
               Cow position:chr9:54611430-54611302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:216-370
               
               
               Cow position:chr9:44527005-44527153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:216-372
               
               
               Cow position:chr9:10309107-10308952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:216-372
               
               
               Cow position:chr9:12226089-12225929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:217-369
               
               
               Cow position:chr9:39011581-39011423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:217-370
               
               
               Cow position:chr9:21888057-21888215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):5, 132

               
               
               Conread position:217-372
               
               
               Cow position:chr9:1751225-1751387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr9:8337915-8338076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr9:17518601-17518440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr9:33114234-33114394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:217-372
               
               
               Cow position:chr9:38846446-38846288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:218-349
               
               
               Cow position:chr9:35306457-35306322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:218-366
               
               
               Cow position:chr9:32089279-32089432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):108, 9

               
               
               Conread position:218-372
               
               
               Cow position:chr9:7859742-7859588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):100, 56

               
               
               Conread position:218-372
               
               
               Cow position:chr9:9243440-9243588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr9:26085947-26086105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:218-372
               
               
               Cow position:chr9:54677153-54677306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:219-371
               
               
               Cow position:chr9:50977363-50977196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:219-372
               
               
               Cow position:chr9:32307341-32307184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:220-371
               
               
               Cow position:chr9:27345693-27345536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:220-371
               
               
               Cow position:chr9:33597877-33598034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr9:24652295-24652453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr9:35167066-35167225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr9:38941541-38941383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:220-372
               
               
               Cow position:chr9:41282908-41283064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:220-372
               
               
               Cow position:chr9:47214653-47214496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:220-372
               
               
               Cow position:chr9:50310867-50310717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:220-372
               
               
               Cow position:chr9:52258170-52258018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):125, 5

               
               
               Conread position:221-372
               
               
               Cow position:chr9:6934179-6934025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:221-372
               
               
               Cow position:chr9:26102627-26102772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):127, 44

               
               
               Conread position:221-372
               
               
               Cow position:chr9:34902211-34902060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:222-348
               
               
               Cow position:chr9:28718605-28718735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-352
               
               
               Cow position:chr9:20828799-20828929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-365
               
               
               Cow position:chr9:26279276-26279127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-365
               
               
               Cow position:chr9:33119995-33119846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:222-366
               
               
               Cow position:chr9:34375031-34374881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:222-368
               
               
               Cow position:chr9:15806030-15805878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:222-370
               
               
               Cow position:chr9:9815306-9815458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-371
               
               
               Cow position:chr9:30402533-30402377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr9:1729781-1729625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr9:5110752-5110907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:222-372
               
               
               Cow position:chr9:5164092-5163937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr9:8901333-8901178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:222-372
               
               
               Cow position:chr9:9723983-9723832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 147

               
               
               Conread position:222-372
               
               
               Cow position:chr9:15215794-15215638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr9:19034250-19034395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr9:25375841-25375687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):108, 45

               
               
               Conread position:222-372
               
               
               Cow position:chr9:26477108-26477265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr9:29185244-29185088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr9:34484486-34484644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr9:42061991-42062150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:222-372
               
               
               Cow position:chr9:56827369-56827530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-383
               
               
               Cow position:chr9:12786580-12786412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr9:5594396-5594552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr9:13744037-13743881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr9:35105896-35105741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:223-372
               
               
               Cow position:chr9:37677788-37677939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:224-327
               
               
               Cow position:chr9:34024595-34024697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:224-365
               
               
               Cow position:chr9:34286694-34286841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-371
               
               
               Cow position:chr9:34283849-34284001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:224-371
               
               
               Cow position:chr9:35832721-35832571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:224-371
               
               
               Cow position:chr9:50139182-50139335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 10

               
               
               Conread position:224-372
               
               
               Cow position:chr9:8992283-8992130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:224-372
               
               
               Cow position:chr9:9551986-9552139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):105, 37

               
               
               Conread position:225-372
               
               
               Cow position:chr9:64064467-64064314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:226-328
               
               
               Cow position:chr9:26394452-26394350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-365
               
               
               Cow position:chr9:24887101-24887248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:226-372
               
               
               Cow position:chr9:37016795-37016940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:226-372
               
               
               Cow position:chr9:41964837-41964686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 71

               
               
               Conread position:227-371
               
               
               Cow position:chr9:3353260-3353403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:227-372
               
               
               Cow position:chr9:43342229-43342378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:227-389
               
               
               Cow position:chr9:58662144-58662304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:228-328
               
               
               Cow position:chr9:12910504-12910402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:228-371
               
               
               Cow position:chr9:64559983-64559835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr9:5342350-5342199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:228-372
               
               
               Cow position:chr9:6839893-6840042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:228-372
               
               
               Cow position:chr9:8998248-8998398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr9:9311755-9311907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 124

               
               
               Conread position:228-372
               
               
               Cow position:chr9:13670532-13670683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr9:22434029-22433880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:228-372
               
               
               Cow position:chr9:52763860-52763711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:228-372
               
               
               Cow position:chr9:55529699-55529844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:228-372
               
               
               Cow position:chr9:58369097-58368948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr9:63785014-63784865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:228-373
               
               
               Cow position:chr9:5650073-5649925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:229-329
               
               
               Cow position:chr9:32710552-32710652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-348
               
               
               Cow position:chr9:35793578-35793700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr9:1878101-1877958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):112, 137

               
               
               Conread position:230-372
               
               
               Cow position:chr9:23970996-23970847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr9:28354418-28354567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:230-372
               
               
               Cow position:chr9:41781555-41781703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:231-368
               
               
               Cow position:chr9:9502991-9503128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 46

               
               
               Conread position:231-368
               
               
               Cow position:chr9:60355311-60355167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:231-372
               
               
               Cow position:chr9:42478580-42478433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:233-352
               
               
               Cow position:chr9:61847220-61847104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:233-369
               
               
               Cow position:chr9:32773117-32773249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 35

               
               
               Conread position:233-370
               
               
               Cow position:chr9:51720992-51720853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 5

               
               
               Conread position:233-371
               
               
               Cow position:chr9:22318256-22318398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 35

               
               
               Conread position:233-372
               
               
               Cow position:chr9:25400293-25400152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:234-371
               
               
               Cow position:chr9:32955779-32955637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:234-372
               
               
               Cow position:chr9:1867359-1867499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:234-372
               
               
               Cow position:chr9:5327163-5327307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr9:7806056-7805912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr9:23797140-23797285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 116

               
               
               Conread position:234-372
               
               
               Cow position:chr9:29819624-29819767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:234-372
               
               
               Cow position:chr9:40215151-40215292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr9:52598816-52598672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:234-372
               
               
               Cow position:chr9:56032411-56032266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:234-389
               
               
               Cow position:chr9:55287985-55287826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr9:4630010-4630152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:235-372
               
               
               Cow position:chr9:11168637-11168779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:236-372
               
               
               Cow position:chr9:13742430-13742572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:236-372
               
               
               Cow position:chr9:64629455-64629316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:237-372
               
               
               Cow position:chr9:44584502-44584642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:238-328
               
               
               Cow position:chr9:11427568-11427658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:238-371
               
               
               Cow position:chr9:4580495-4580356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr9:5433541-5433681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:238-372
               
               
               Cow position:chr9:29684054-29684192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:239-372
               
               
               Cow position:chr9:43443714-43443850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:240-372
               
               
               Cow position:chr9:6852156-6852022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr9:8834215-8834084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-372
               
               
               Cow position:chr9:43870887-43871024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr9:19902995-19903131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:242-372
               
               
               Cow position:chr9:55075215-55075083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:248-372
               
               
               Cow position:chr9:38289404-38289277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:253-372
               
               
               Cow position:chr9:6879703-6879819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:85-372
               
               
               Cow position:chrX:34544082-34543791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:90-372
               
               
               Cow position:chrX:20152139-20151867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:150-370
               
               
               Cow position:chrX:27516757-27516539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:156-372
               
               
               Cow position:chrX:6222907-6223121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:159-309
               
               
               Cow position:chrX:10078950-10079100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 26

               
               
               Conread position:160-304
               
               
               Cow position:chrX:42482613-42482754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:160-328
               
               
               Cow position:chrX:2742124-2742284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:160-348
               
               
               Cow position:chrX:11180979-11181163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):161, 22

               
               
               Conread position:160-372
               
               
               Cow position:chrX:18046613-18046408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):190, 29

               
               
               Conread position:160-372
               
               
               Cow position:chrX:20743830-20743611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:160-372
               
               
               Cow position:chrX:43729993-43730216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:163-343
               
               
               Cow position:chrX:23187375-23187548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:168-328
               
               
               Cow position:chrX:28098541-28098383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:173-372
               
               
               Cow position:chrX:7722202-7721999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:174-372
               
               
               Cow position:chrX:11717572-11717776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:176-322
               
               
               Cow position:chrX:19407526-19407672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:176-340
               
               
               Cow position:chrX:11582431-11582264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:176-361
               
               
               Cow position:chrX:33151781-33151963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):151, 57

               
               
               Conread position:176-372
               
               
               Cow position:chrX:42171088-42171287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:176-372
               
               
               Cow position:chrX:42235316-42235517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):144, 74

               
               
               Conread position:177-372
               
               
               Cow position:chrX:8797459-8797263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):65, 162

               
               
               Conread position:177-372
               
               
               Cow position:chrX:14973533-14973734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:179-383
               
               
               Cow position:chrX:22914837-22915044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):145, 29

               
               
               Conread position:181-328
               
               
               Cow position:chrX:17726178-17726032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 53

               
               
               Conread position:184-372
               
               
               Cow position:chrX:18694735-18694920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:185-372
               
               
               Cow position:chrX:32977886-32978074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):24, 38

               
               
               Conread position:191-369
               
               
               Cow position:chrX:41526335-41526512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):139, 103

               
               
               Conread position:192-326
               
               
               Cow position:chrX:27189362-27189230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 68

               
               
               Conread position:192-347
               
               
               Cow position:chrX:23574847-23574689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:193-327
               
               
               Cow position:chrX:19097029-19097160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:193-372
               
               
               Cow position:chrX:9365484-9365669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:193-372
               
               
               Cow position:chrX:23562827-23562639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:194-369
               
               
               Cow position:chrX:38208356-38208534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:195-319
               
               
               Cow position:chrX:25424118-25423996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:195-372
               
               
               Cow position:chrX:38964299-38964115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:196-370
               
               
               Cow position:chrX:11084876-11085054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):134, 57

               
               
               Conread position:197-365
               
               
               Cow position:chrX:23266600-23266429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:199-383
               
               
               Cow position:chrX:37129455-37129265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:200-334
               
               
               Cow position:chrX:14002802-14002933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:202-365
               
               
               Cow position:chrX:23089036-23088870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:203-372
               
               
               Cow position:chrX:17956873-17956700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:204-342
               
               
               Cow position:chrX:25238544-25238407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:206-328
               
               
               Cow position:chrX:25282860-25282981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:206-372
               
               
               Cow position:chrX:23498503-23498670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):116, 27

               
               
               Conread position:207-348
               
               
               Cow position:chrX:23860813-23860961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:207-372
               
               
               Cow position:chrX:21593464-21593294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:208-328
               
               
               Cow position:chrX:41940001-41939880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:208-365
               
               
               Cow position:chrX:32795931-32796087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):153, 131

               
               
               Conread position:209-372
               
               
               Cow position:chrX:6278322-6278491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:209-372
               
               
               Cow position:chrX:7278082-7277918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):118, 10

               
               
               Conread position:210-322
               
               
               Cow position:chrX:36848404-36848515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:210-325
               
               
               Cow position:chrX:23182807-23182923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:210-328
               
               
               Cow position:chrX:616083-616202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:210-328
               
               
               Cow position:chrX:7107678-7107559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:210-328
               
               
               Cow position:chrX:12255144-12255261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:210-328
               
               
               Cow position:chrX:36039577-36039456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:210-328
               
               
               Cow position:chrX:43014498-43014616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-329
               
               
               Cow position:chrX:16481395-16481515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:210-340
               
               
               Cow position:chrX:9855842-9855711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:210-348
               
               
               Cow position:chrX:4612709-4612849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:210-348
               
               
               Cow position:chrX:31373711-31373569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:210-348
               
               
               Cow position:chrX:37062409-37062552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:210-360
               
               
               Cow position:chrX:43011981-43012129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:210-365
               
               
               Cow position:chrX:40269669-40269505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:210-366
               
               
               Cow position:chrX:753331-753165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:210-371
               
               
               Cow position:chrX:29680087-29680253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:210-372
               
               
               Cow position:chrX:5872492-5872324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):115, 140

               
               
               Conread position:210-372
               
               
               Cow position:chrX:16348396-16348557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:210-372
               
               
               Cow position:chrX:23513845-23514008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:210-372
               
               
               Cow position:chrX:25412080-25411914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):115, 58

               
               
               Conread position:210-372
               
               
               Cow position:chrX:27393851-27394019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:210-372
               
               
               Cow position:chrX:31626802-31626966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:210-372
               
               
               Cow position:chrX:31829286-31829454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:211-369
               
               
               Cow position:chrX:29501711-29501871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:211-369
               
               
               Cow position:chrX:40531869-40532033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:211-371
               
               
               Cow position:chrX:25459556-25459726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:211-372
               
               
               Cow position:chrX:13382499-13382338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 127

               
               
               Conread position:211-372
               
               
               Cow position:chrX:23562030-23561864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:211-393
               
               
               Cow position:chrX:31312203-31312015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:212-330
               
               
               Cow position:chrX:41990961-41991079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-370
               
               
               Cow position:chrX:4043694-4043854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:212-372
               
               
               Cow position:chrX:6463771-6463618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:212-372
               
               
               Cow position:chrX:32821202-32821036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:212-372
               
               
               Cow position:chrX:37489891-37489726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):115, 56

               
               
               Conread position:213-328
               
               
               Cow position:chrX:41363687-41363802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:213-372
               
               
               Cow position:chrX:6690088-6690253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:214-331
               
               
               Cow position:chrX:26692382-26692265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-372
               
               
               Cow position:chrX:5679402-5679562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:214-372
               
               
               Cow position:chrX:29733420-29733585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:215-343
               
               
               Cow position:chrX:35019420-35019294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:215-352
               
               
               Cow position:chrX:1960256-1960396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:215-365
               
               
               Cow position:chrX:38226940-38227093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:215-371
               
               
               Cow position:chrX:5017255-5017403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:215-371
               
               
               Cow position:chrX:35285343-35285181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:215-372
               
               
               Cow position:chrX:6407713-6407553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 96

               
               
               Conread position:215-372
               
               
               Cow position:chrX:14985992-14986144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:215-372
               
               
               Cow position:chrX:21328083-21327918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:215-372
               
               
               Cow position:chrX:25037157-25036994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:215-372
               
               
               Cow position:chrX:33640145-33639985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):115, 152

               
               
               Conread position:215-372
               
               
               Cow position:chrX:38587673-38587836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 53

               
               
               Conread position:216-370
               
               
               Cow position:chrX:28878006-28878165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):113, 13

               
               
               Conread position:216-370
               
               
               Cow position:chrX:34503090-34502929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:216-372
               
               
               Cow position:chrX:7351466-7351307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:216-372
               
               
               Cow position:chrX:39220248-39220086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:216-372
               
               
               Cow position:chrX:46532328-46532488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:217-328
               
               
               Cow position:chrX:31983417-31983528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-348
               
               
               Cow position:chrX:40649063-40648929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:217-369
               
               
               Cow position:chrX:27667594-27667443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:217-372
               
               
               Cow position:chrX:19018663-19018824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:217-372
               
               
               Cow position:chrX:28134506-28134348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):104, 80

               
               
               Conread position:217-372
               
               
               Cow position:chrX:42855626-42855465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:218-332
               
               
               Cow position:chrX:4592335-4592449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-370
               
               
               Cow position:chrX:169379-169536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:218-372
               
               
               Cow position:chrX:152067-151912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 53

               
               
               Conread position:218-372
               
               
               Cow position:chrX:18964663-18964816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:218-372
               
               
               Cow position:chrX:31294407-31294565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:218-372
               
               
               Cow position:chrX:44339158-44339314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:219-369
               
               
               Cow position:chrX:38006606-38006756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:219-372
               
               
               Cow position:chrX:48558912-48558753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:220-328
               
               
               Cow position:chrX:42380948-42381055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:220-329
               
               
               Cow position:chrX:35985982-35985874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:220-371
               
               
               Cow position:chrX:16323855-16324006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:220-372
               
               
               Cow position:chrX:24170565-24170722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):49, 55

               
               
               Conread position:220-372
               
               
               Cow position:chrX:25815737-25815894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:220-372
               
               
               Cow position:chrX:28865842-28865996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:220-372
               
               
               Cow position:chrX:34420898-34420741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 6

               
               
               Conread position:220-372
               
               
               Cow position:chrX:35658959-35658807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:221-372
               
               
               Cow position:chrX:7710375-7710532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:221-372
               
               
               Cow position:chrX:35269025-35268873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):129, 138

               
               
               Conread position:221-372
               
               
               Cow position:chrX:44397174-44397022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 77

               
               
               Conread position:222-323
               
               
               Cow position:chrX:6480433-6480534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-325
               
               
               Cow position:chrX:11589204-11589307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-325
               
               
               Cow position:chrX:42086990-42086887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-328
               
               
               Cow position:chrX:6599621-6599725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:222-333
               
               
               Cow position:chrX:34270724-34270611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-333
               
               
               Cow position:chrX:37867595-37867484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-348
               
               
               Cow position:chrX:2314456-2314586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:222-348
               
               
               Cow position:chrX:4109347-4109217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:222-348
               
               
               Cow position:chrX:32877214-32877342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:222-351
               
               
               Cow position:chrX:35681729-35681596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:222-353
               
               
               Cow position:chrX:14925435-14925304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:222-357
               
               
               Cow position:chrX:17498485-17498346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:222-365
               
               
               Cow position:chrX:8731256-8731108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:222-368
               
               
               Cow position:chrX:24331939-24331787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-368
               
               
               Cow position:chrX:35276148-35275997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-370
               
               
               Cow position:chrX:42492361-42492514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:222-371
               
               
               Cow position:chrX:4559896-4559747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):126, 100

               
               
               Conread position:222-371
               
               
               Cow position:chrX:14599695-14599545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:222-371
               
               
               Cow position:chrX:41878771-41878922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:1122384-1122536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:5679768-5679913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:13122106-13121945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:16575275-16575119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:17524221-17524377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:20339731-20339884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 67

               
               
               Conread position:222-372
               
               
               Cow position:chrX:23335813-23335965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:222-372
               
               
               Cow position:chrX:27175161-27175010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:27705749-27705594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 144

               
               
               Conread position:222-372
               
               
               Cow position:chrX:31250551-31250395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:38549610-38549452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:40680777-40680621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:41027322-41027166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:222-372
               
               
               Cow position:chrX:42247019-42247175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:222-375
               
               
               Cow position:chrX:20345613-20345455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 120

               
               
               Conread position:223-329
               
               
               Cow position:chrX:32747894-32747788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:223-366
               
               
               Cow position:chrX:40108356-40108506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:223-372
               
               
               Cow position:chrX:15147034-15147186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:223-372
               
               
               Cow position:chrX:29549392-29549538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 11

               
               
               Conread position:223-372
               
               
               Cow position:chrX:29601666-29601821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:224-328
               
               
               Cow position:chrX:40685167-40685271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-348
               
               
               Cow position:chrX:40355192-40355068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-369
               
               
               Cow position:chrX:12979673-12979824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:224-372
               
               
               Cow position:chrX:10516414-10516260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:224-372
               
               
               Cow position:chrX:27074889-27075044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:224-372
               
               
               Cow position:chrX:27261353-27261198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:224-372
               
               
               Cow position:chrX:29478882-29478731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:224-372
               
               
               Cow position:chrX:31252568-31252424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:224-372
               
               
               Cow position:chrX:31489681-31489527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:224-372
               
               
               Cow position:chrX:32910259-32910111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:224-389
               
               
               Cow position:chrX:6259987-6260158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:225-372
               
               
               Cow position:chrX:38218876-38218721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:225-372
               
               
               Cow position:chrX:42506073-42506220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 92

               
               
               Conread position:225-389
               
               
               Cow position:chrX:17888265-17888429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:226-328
               
               
               Cow position:chrX:8869242-8869345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:226-328
               
               
               Cow position:chrX:20583825-20583723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:83
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-328
               
               
               Cow position:chrX:34412005-34411903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:226-369
               
               
               Cow position:chrX:11656240-11656091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:226-369
               
               
               Cow position:chrX:27668799-27668948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 41

               
               
               Conread position:226-372
               
               
               Cow position:chrX:126926-126779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 118

               
               
               Conread position:226-372
               
               
               Cow position:chrX:4515850-4515692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:227-328
               
               
               Cow position:chrX:13177318-13177419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:227-372
               
               
               Cow position:chrX:42449856-42450007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:227-372
               
               
               Cow position:chrX:44054960-44054809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-328
               
               
               Cow position:chrX:31436631-31436531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-328
               
               
               Cow position:chrX:35885570-35885670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-328
               
               
               Cow position:chrX:40543366-40543464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:228-334
               
               
               Cow position:chrX:23497535-23497640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:228-369
               
               
               Cow position:chrX:29050405-29050260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:228-370
               
               
               Cow position:chrX:16984797-16984651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:228-371
               
               
               Cow position:chrX:4768890-4768749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:228-371
               
               
               Cow position:chrX:39180077-39180225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 58

               
               
               Conread position:228-372
               
               
               Cow position:chrX:20887483-20887632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:228-372
               
               
               Cow position:chrX:41068882-41068732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:228-373
               
               
               Cow position:chrX:19717676-19717528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:228-374
               
               
               Cow position:chrX:46068601-46068747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:228-378
               
               
               Cow position:chrX:38094364-38094516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:229-348
               
               
               Cow position:chrX:11653926-11653807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-348
               
               
               Cow position:chrX:46909971-46909848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:229-372
               
               
               Cow position:chrX:1337136-1337272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:229-372
               
               
               Cow position:chrX:38301965-38301816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:230-370
               
               
               Cow position:chrX:4645758-4645904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:231-370
               
               
               Cow position:chrX:22387096-22387237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:231-372
               
               
               Cow position:chrX:32318460-32318312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:231-372
               
               
               Cow position:chrX:42894081-42893931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:233-360
               
               
               Cow position:chrX:10076123-10075992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:233-372
               
               
               Cow position:chrX:31442678-31442822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:233-372
               
               
               Cow position:chrX:41238203-41238347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:234-328
               
               
               Cow position:chrX:21986141-21986234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:234-328
               
               
               Cow position:chrX:42875363-42875269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-348
               
               
               Cow position:chrX:29562935-29563049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:234-348
               
               
               Cow position:chrX:48822192-48822309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:234-354
               
               
               Cow position:chrX:40035289-40035407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:234-370
               
               
               Cow position:chrX:42873536-42873396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:234-371
               
               
               Cow position:chrX:23092024-23091878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:234-372
               
               
               Cow position:chrX:34565433-34565293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:235-371
               
               
               Cow position:chrX:9416534-9416675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:235-372
               
               
               Cow position:chrX:3806831-3806689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:235-372
               
               
               Cow position:chrX:11614842-11614705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 5

               
               
               Conread position:235-372
               
               
               Cow position:chrX:15007000-15007142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:235-372
               
               
               Cow position:chrX:23188634-23188773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:236-372
               
               
               Cow position:chrX:36356254-36356119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 53

               
               
               Conread position:237-372
               
               
               Cow position:chrX:5900610-5900473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:237-372
               
               
               Cow position:chrX:11762854-11762994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:237-372
               
               
               Cow position:chrX:23113434-23113292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:238-348
               
               
               Cow position:chrX:2551239-2551124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:238-348
               
               
               Cow position:chrX:40567767-40567658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:238-372
               
               
               Cow position:chrX:17966487-17966348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):92, 6

               
               
               Conread position:239-372
               
               
               Cow position:chrX:10305205-10305340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:240-372
               
               
               Cow position:chrX:27511573-27511435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:241-366
               
               
               Cow position:chrX:47342259-47342129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:245-365
               
               
               Cow position:chrX:46429679-46429805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:245-371
               
               
               Cow position:chrX:17662458-17662587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:246-371
               
               
               Cow position:chrX:20678003-20678130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:257-377
               
               
               Cow position:chrX:37665819-37665693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0